breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_012967375,7290TC32.6% 200.5 / 51.9 136L219P (CTG→CCG) aroMAroM family protein
*NC_0129672,016,0910TA29.7% 66.5 / 16.6 37intergenic (‑123/+56)yeeE/plaPthiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP
*NC_0129672,105,0840TC23.3% 68.0 / 11.8 30intergenic (+45/+167)ECB_RS10540/ECB_RS10545glycosyltransferase family 2 protein/phage tail protein
*NC_0129674,169,2211.G22.2% 112.8 / 28.3 36intergenic (+37/‑176)rpoC/yjaZDNA‑directed RNA polymerase subunit beta'/heat‑shock protein C
*NC_0129673,174,2560TG20.9% 318.3 / 16.2 129T175P (ACC→CCC) ygjVYgjV family protein
*NC_0129673,268,9910TG20.7% 492.9 / 15.8 193G16G (GGT→GGGispBoctaprenyl diphosphate synthase

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 3482676 =119 (0.470)76 (0.330) 53/130 3.6 47.7% coding (992/2706 nt) malT HTH‑type transcriptional regulator MalT
?NC_012967 = 3482700 58 (0.250)coding (1016/2706 nt) malT HTH‑type transcriptional regulator MalT
* ? NC_012967 880528 =188 (0.740)17 (0.080) 17/114 9.1 12.5% intergenic (+17/+163) rcdA/ECB_RS04335 DNA‑binding transcriptional regulator RcdA/hypothetical protein
?NC_012967 = 904682 87 (0.430)intergenic (+77/+159) ECB_RS04500/ybjL ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter
* ? NC_012967 469901 =176 (0.700)11 (0.060) 7/104 12.2 9.0% intergenic (+15/‑221) adk/hemH adenylate kinase/ferrochelatase
?NC_012967 = 4210195 93 (0.500)intergenic (+38/+95) rluF/yjbD 23S rRNA pseudouridine(2604) synthase RluF/DUF3811 domain‑containing protein
* ? NC_012967 3482701 =86 (0.340)10 (0.050)
+CCCGCCGCCAGTTCCCACT
6/104 12.8 14.6% coding (1017/2706 nt) malT HTH‑type transcriptional regulator MalT
?NC_012967 = 3482706 75 (0.300)coding (1022/2706 nt) malT HTH‑type transcriptional regulator MalT
* ? NC_012967 248715 =251 (0.990)8 (0.050) 3/100 14.4 7.1% intergenic (+23/‑183) lpcA/yafJ D‑sedoheptulose 7‑phosphate isomerase/class II glutamine amidotransferase
?NC_012967 = 480764 33 (0.190)intergenic (+138/+279) ybaQ/copA HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA
* ? NC_012967 = 2515918252 (1.000)6 (0.030) 5/126 14.5 2.8% coding (770/2016 nt) tmcA tRNA cytosine(34) acetyltransferase TmcA
?NC_012967 2778952 = 199 (0.890)coding (1447/1800 nt) cysJ NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit
* ? NC_012967 = 922312250 (0.990)3 (0.010) 3/126 15.8 1.3% coding (693/831 nt) amiD N‑acetylmuramoyl‑L‑alanine amidase AmiD
?NC_012967 1491704 = 250 (1.110)coding (1472/2103 nt) yncD TonB‑dependent receptor
* ? NC_012967 509243 =243 (0.960)3 (0.010) 3/134 16.1 1.3% coding (492/879 nt) glxR 2‑hydroxy‑3‑oxopropionate reductase
?NC_012967 = 4204196 237 (0.990)coding (1438/3684 nt) metH methionine synthase
* ? NC_012967 = 1686324240 (0.950)3 (0.010) 3/136 16.2 1.2% coding (2212/2223 nt) rsxC electron transport complex subunit RsxC
?NC_012967 = 1686489 270 (1.110)coding (154/1059 nt) rsxD electron transport complex subunit RsxD