breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_012967 | 375,729 | 0 | T | C | 32.6% | 200.5 / 51.9 | 136 | L219P (CTG→CCG) | aroM | AroM family protein |
* | NC_012967 | 2,016,091 | 0 | T | A | 29.7% | 66.5 / 16.6 | 37 | intergenic (‑123/+56) | yeeE/plaP | thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP |
* | NC_012967 | 2,105,084 | 0 | T | C | 23.3% | 68.0 / 11.8 | 30 | intergenic (+45/+167) | ECB_RS10540/ECB_RS10545 | glycosyltransferase family 2 protein/phage tail protein |
* | NC_012967 | 4,169,221 | 1 | . | G | 22.2% | 112.8 / 28.3 | 36 | intergenic (+37/‑176) | rpoC/yjaZ | DNA‑directed RNA polymerase subunit beta'/heat‑shock protein C |
* | NC_012967 | 3,174,256 | 0 | T | G | 20.9% | 318.3 / 16.2 | 129 | T175P (ACC→CCC) | ygjV | YgjV family protein |
* | NC_012967 | 3,268,991 | 0 | T | G | 20.7% | 492.9 / 15.8 | 193 | G16G (GGT→GGG) | ispB | octaprenyl diphosphate synthase |
Marginal new junction evidence (sorted from low to high skew) | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 3482676 = | 119 (0.470) | 76 (0.330) | 53/130 | 3.6 | 47.7% | coding (992/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
? | NC_012967 | = 3482700 | 58 (0.250) | coding (1016/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
* | ? | NC_012967 | 880528 = | 188 (0.740) | 17 (0.080) | 17/114 | 9.1 | 12.5% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
? | NC_012967 | = 904682 | 87 (0.430) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
* | ? | NC_012967 | 469901 = | 176 (0.700) | 11 (0.060) | 7/104 | 12.2 | 9.0% | intergenic (+15/‑221) | adk/hemH | adenylate kinase/ferrochelatase |
? | NC_012967 | = 4210195 | 93 (0.500) | intergenic (+38/+95) | rluF/yjbD | 23S rRNA pseudouridine(2604) synthase RluF/DUF3811 domain‑containing protein | |||||
* | ? | NC_012967 | 3482701 = | 86 (0.340) | 10 (0.050) +CCCGCCGCCAGTTCCCACT |
6/104 | 12.8 | 14.6% | coding (1017/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
? | NC_012967 | = 3482706 | 75 (0.300) | coding (1022/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
* | ? | NC_012967 | 248715 = | 251 (0.990) | 8 (0.050) | 3/100 | 14.4 | 7.1% | intergenic (+23/‑183) | lpcA/yafJ | D‑sedoheptulose 7‑phosphate isomerase/class II glutamine amidotransferase |
? | NC_012967 | = 480764 | 33 (0.190) | intergenic (+138/+279) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA | |||||
* | ? | NC_012967 | = 2515918 | 252 (1.000) | 6 (0.030) | 5/126 | 14.5 | 2.8% | coding (770/2016 nt) | tmcA | tRNA cytosine(34) acetyltransferase TmcA |
? | NC_012967 | 2778952 = | 199 (0.890) | coding (1447/1800 nt) | cysJ | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit | |||||
* | ? | NC_012967 | = 922312 | 250 (0.990) | 3 (0.010) | 3/126 | 15.8 | 1.3% | coding (693/831 nt) | amiD | N‑acetylmuramoyl‑L‑alanine amidase AmiD |
? | NC_012967 | 1491704 = | 250 (1.110) | coding (1472/2103 nt) | yncD | TonB‑dependent receptor | |||||
* | ? | NC_012967 | 509243 = | 243 (0.960) | 3 (0.010) | 3/134 | 16.1 | 1.3% | coding (492/879 nt) | glxR | 2‑hydroxy‑3‑oxopropionate reductase |
? | NC_012967 | = 4204196 | 237 (0.990) | coding (1438/3684 nt) | metH | methionine synthase | |||||
* | ? | NC_012967 | = 1686324 | 240 (0.950) | 3 (0.010) | 3/136 | 16.2 | 1.2% | coding (2212/2223 nt) | rsxC | electron transport complex subunit RsxC |
? | NC_012967 | = 1686489 | 270 (1.110) | coding (154/1059 nt) | rsxD | electron transport complex subunit RsxD |