mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 119,500 | A→C | intergenic (+157/‑4) | pdhR → / → aceE | pyruvate dehydrogenase complex transcriptional repressor PdhR/pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| MC JC | 1,290,924 | 2651 bp→80 bp | coding (4‑2654/2676 nt) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| MC JC | 1,749,959 | 1388 bp→80 bp | coding (5‑1392/1413 nt) | pykF → | pyruvate kinase PykF |
| MC JC | 1,931,909 | 1419 bp→81 bp | coding (4‑1422/1443 nt) | pyk → | pyruvate kinase |
| RA | 3,081,838 | G→A | A66T (GCA→ACA) | galP → | galactose/proton symporter |
| RA | 3,986,413 | +C | coding (1901/2547 nt) | cyaA → | class I adenylate cyclase |
| RA | 4,106,389 | C→A | Q254H (CAG→CAT) | glpK ← | glycerol kinase GlpK |
| RA | 4,140,541 | A→C | I829S (ATT→AGT) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,442,780 | C→T | I130I (ATC→ATT) | ytfT → | ABC transporter permease |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 946651 | 949087 | 2437 | 45 [44] | [44] 45 | pflB–[focA] | pflB,[focA] |
| * | * | ÷ | NZ_CP009273 | 1459321 | 1459592 | 272 | 45 [44] | [42] 45 | BW25113_RS25580 | BW25113_RS25580 |
| * | * | ÷ | NZ_CP009273 | 1524292 | 1524687 | 396 | 45 [43] | [44] 45 | BW25113_RS26145–[BW25113_RS25600] | BW25113_RS26145,[BW25113_RS25600] |
| * | * | ÷ | NZ_CP009273 | 1972971 | 1973181 | 211 | 107 [0] | [44] 46 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| * | * | ÷ | NZ_CP009273 | 2027027 | 2027518 | 492 | 45 [42] | [43] 45 | drpB/ompC | cell division protein DrpB/porin OmpC |
| * | * | ÷ | NZ_CP009273 | 2337697 | 2337958 | 262 | 46 [44] | [43] 50 | yfaL/nrdA | AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha |
| * | * | ÷ | NZ_CP009273 | 2462588 | 2463374 | 787 | 47 [44] | [43] 45 | [yfdH]–[BW25113_RS12270] | [yfdH],[BW25113_RS12270] |
| * | * | ÷ | NZ_CP009273 | 3280349 | 3280787 | 439 | 47 [44] | [31] 45 | [agaI]–[yraH] | [agaI],[yraH] |
| * | * | ÷ | NZ_CP009273 | 3786973 | 3787118 | 146 | 45 [39] | [42] 47 | [yibB] | [yibB] |
| * | * | ÷ | NZ_CP009273 | 3792313 | 3792922 | 610 | 45 [43] | [42] 50 | [waaU]–[waaZ] | [waaU],[waaZ] |
| * | * | ÷ | NZ_CP009273 | 3797548 | 3797934 | 387 | 46 [44] | [44] 46 | rfaS | LPS core biosynthesis protein RfaS |
| * | * | ÷ | NZ_CP009273 | 4127787 | 4129012 | 1226 | 45 [43] | [42] 48 | gldA–[fsa] | gldA,[fsa] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 73 (0.690) | 64 (0.610) | 45/450 | 1.5 | 51.6% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 47 (0.450) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1972970 | 0 (0.000) | 107 (1.020) | 65/450 | 0.4 | 100% | intergenic (‑516/‑264) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||