mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 119,500 | A→C | intergenic (+157/‑4) | pdhR → / → aceE | pyruvate dehydrogenase complex transcriptional repressor PdhR/pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| MC JC | 1,290,924 | 2651 bp→80 bp | coding (4‑2654/2676 nt) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| MC JC | 1,749,959 | 1388 bp→80 bp | coding (5‑1392/1413 nt) | pykF → | pyruvate kinase PykF |
| MC JC | 1,931,909 | 1419 bp→81 bp | coding (4‑1422/1443 nt) | pyk → | pyruvate kinase |
| RA | 3,081,838 | G→A | A66T (GCA→ACA) | galP → | galactose/proton symporter |
| RA | 4,140,482 | G→T | R849S (CGC→AGC) | ppc ← | phosphoenolpyruvate carboxylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 946671 | 949073 | 2403 | 49 [44] | [43] 47 | pflB–[focA] | pflB,[focA] |
| * | * | ÷ | NZ_CP009273 | 2462590 | 2463329 | 740 | 52 [44] | [43] 50 | [yfdH]–[BW25113_RS12270] | [yfdH],[BW25113_RS12270] |
| * | * | ÷ | NZ_CP009273 | 2984390 | 2984625 | 236 | 46 [42] | [44] 46 | [BW25113_RS14825] | [BW25113_RS14825] |
| * | * | ÷ | NZ_CP009273 | 2988463 | 2988756 | 294 | 46 [43] | [43] 45 | [BW25113_RS26010] | [BW25113_RS26010] |
| * | * | ÷ | NZ_CP009273 | 3762903 | 3763314 | 412 | 48 [41] | [43] 45 | [BW25113_RS26240] | [BW25113_RS26240] |
| * | * | ÷ | NZ_CP009273 | 4127825 | 4128992 | 1168 | 46 [43] | [43] 52 | gldA–[fsa] | gldA,[fsa] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 70 (0.650) | 102 (0.950) | 66/438 | 0.4 | 60.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 66 (0.610) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1972967 = | 0 (0.000) | 82 (0.760) | 37/438 | 2.4 | 100% | intergenic (‑513/‑267) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | 2095230 = | NA (NA) | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | = 1972970 | 0 (0.000) | 89 (0.830) | 63/438 | 0.5 | 100% | intergenic (‑516/‑264) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||