mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 119,500 | A→C | intergenic (+157/‑4) | pdhR → / → aceE | pyruvate dehydrogenase complex transcriptional repressor PdhR/pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| MC JC | 1,290,924 | 2651 bp→80 bp | coding (4‑2654/2676 nt) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| MC JC | 1,749,959 | 1388 bp→80 bp | coding (5‑1392/1413 nt) | pykF → | pyruvate kinase PykF |
| MC JC | 1,931,909 | 1419 bp→81 bp | coding (4‑1422/1443 nt) | pyk → | pyruvate kinase |
| RA | 3,081,838 | G→A | A66T (GCA→ACA) | galP → | galactose/proton symporter |
| RA | 4,140,482 | G→T | R849S (CGC→AGC) | ppc ← | phosphoenolpyruvate carboxylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 946675 | 949072 | 2398 | 47 [45] | [40] 51 | pflB–[focA] | pflB,[focA] |
| * | * | ÷ | NZ_CP009273 | 1459316 | 1459628 | 313 | 47 [46] | [46] 47 | [paaY]–BW25113_RS25580 | [paaY],BW25113_RS25580 |
| * | * | ÷ | NZ_CP009273 | 1972971 | 1973196 | 226 | 107 [0] | [46] 48 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| * | * | ÷ | NZ_CP009273 | 2050062 | 2050339 | 278 | 47 [44] | [40] 48 | [yeeN] | [yeeN] |
| * | * | ÷ | NZ_CP009273 | 2061876 | 2062151 | 276 | 47 [46] | [46] 50 | [BW25113_RS24005] | [BW25113_RS24005] |
| * | * | ÷ | NZ_CP009273 | 2449057 | 2449671 | 615 | 47 [44] | [43] 51 | [yfcV] | [yfcV] |
| * | * | ÷ | NZ_CP009273 | 2462537 | 2463319 | 783 | 47 [44] | [37] 48 | [yfdH]–[BW25113_RS12270] | [yfdH],[BW25113_RS12270] |
| * | * | ÷ | NZ_CP009273 | 2897015 | 2897311 | 297 | 47 [38] | [46] 47 | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | * | ÷ | NZ_CP009273 | 2988447 | 2988757 | 311 | 48 [46] | [46] 47 | [BW25113_RS14850]–[BW25113_RS26010] | [BW25113_RS14850],[BW25113_RS26010] |
| * | * | ÷ | NZ_CP009273 | 3575041 | 3575598 | 558 | 52 [43] | [46] 48 | [hcp] | [hcp] |
| * | * | ÷ | NZ_CP009273 | 3786929 | 3787156 | 228 | 47 [45] | [45] 52 | [yibB] | [yibB] |
| * | * | ÷ | NZ_CP009273 | 3792308 | 3792941 | 634 | 50 [40] | [43] 48 | [waaU]–[waaZ] | [waaU],[waaZ] |
| * | * | ÷ | NZ_CP009273 | 3797527 | 3798549 | 1023 | 48 [44] | [43] 51 | rfaS–[rfaP] | rfaS,[rfaP] |
| * | * | ÷ | NZ_CP009273 | 4127797 | 4128997 | 1201 | 49 [44] | [46] 48 | gldA–[fsa] | gldA,[fsa] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 70 (0.630) | 71 (0.640) | 50/454 | 1.3 | 48.3% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 82 (0.740) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 22 (0.200) | 85 (0.820) | 52/422 | 0.9 | 76.8% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 31 (0.300) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 21 (0.190) | 93 (0.900) | 65/422 | 0.3 | 78.6% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 31 (0.300) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1972970 | 0 (0.000) | 107 (0.960) | 76/454 | 0.2 | 100% | intergenic (‑516/‑264) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||