| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 1 | 72,000 bp x 12 | 100% | amplification | PF3D7_0300100–PF3D7_0301000 | 16 genes PF3D7_0300100, PF3D7_0300100, PF3D7_0300200, PF3D7_0300200, PF3D7_0300400, PF3D7_0300400, PF3D7_0300500, PF3D7_0300500, PF3D7_0300600, PF3D7_0300700, PF3D7_0300700, PF3D7_0300800, PF3D7_0300800, PF3D7_0300900, PF3D7_0300900, PF3D7_0301000 |
|
| NC_000521 | 1,478 | A→C | 100% | intergenic (–/‑35487) | – / → PF3D7_0300100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_000521 | 71,962 | Δ2 bp | ? | 100% | intergenic (‑43/‑4531) | PF3D7_0301000 ← / → PF3D7_0301100 | acyl‑CoA synthetase/Plasmodium exported protein (hyp13), unknown function |
| NC_000521 | 72,032 | T→A | 100% | 100% | intergenic (‑113/‑4462) | PF3D7_0301000 ← / → PF3D7_0301100 | acyl‑CoA synthetase/Plasmodium exported protein (hyp13), unknown function |
| NC_000521 | 78,401 | 77,900 bp x 3 | 100% | amplification | PF3D7_0301200–PF3D7_0302900 | 45 genes PF3D7_0301200, PF3D7_0301200, PF3D7_0301300, PF3D7_0301300, PF3D7_0301400, PF3D7_0301400, PF3D7_0301500, PF3D7_0301500, PF3D7_0301600, PF3D7_0301600, PF3D7_0301700, PF3D7_0301700, PF3D7_0301800, PF3D7_0301800, PF3D7_0301900, PF3D7_0302000, PF3D7_0302000, PF3D7_0302100, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302200, PF3D7_0302400, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302500, PF3D7_0302600, PF3D7_0302700, PF3D7_0302700, PF3D7_0302700, PF3D7_0302800, PF3D7_0302900, PF3D7_0302900, PF3D7_0302900 |
|
| NC_000521 | 90,519 | +T | 100% | intergenic (‑1288/+596) | PF3D7_0301500 ← / ← PF3D7_0301600 | Plasmodium exported protein, unknown function/Plasmodium exported protein (hyp1), unknown function | |
| NC_000521 | 101,932 | Δ1 bp | 100% | intergenic (‑4025/‑2393) | PF3D7_0301700 ← / → PF3D7_0301800 | Plasmodium exported protein, unknown function/Plasmodium exported protein, unknown function | |
| NC_000521 | 101,933 | Δ1 bp | 100% | intergenic (‑4026/‑2392) | PF3D7_0301700 ← / → PF3D7_0301800 | Plasmodium exported protein, unknown function/Plasmodium exported protein, unknown function | |
| NC_000521 | 151,467 | +AT | 100% | intergenic (‑2162/+701) | PF3D7_0302800 ← / ← PF3D7_0302900 | RNA‑binding protein, putative/exportin‑1, putative | |
| NC_000521 | 159,301 | 99,300 bp x 3 | 100% | amplification | PF3D7_0303000–PF3D7_0305300 | 50 genes PF3D7_0303000, PF3D7_0303100, PF3D7_0303200, PF3D7_0303200, PF3D7_0303200, PF3D7_0303200, PF3D7_0303200, PF3D7_0303300, PF3D7_0303300, PF3D7_0303400, PF3D7_0303400, PF3D7_0303400, PF3D7_0303400, PF3D7_0303400, PF3D7_0303400, PF3D7_0303400, PF3D7_0303400, PF3D7_0303500, PF3D7_0303600, PF3D7_0303700, PF3D7_0303800, PF3D7_0303900, PF3D7_0303900, PF3D7_0303900, PF3D7_0304000, PF3D7_0304000, PF3D7_0304000, PF3D7_0304000, PF3D7_0304000, PF3D7_0304100, PF3D7_0304200, PF3D7_0304300, PF3D7_0304400.1, PF3D7_0304400.1, PF3D7_0304500, PF3D7_0304500, PF3D7_0304500, PF3D7_0304600, PF3D7_0304700, PF3D7_0304700, PF3D7_0304700, PF3D7_0304800, PF3D7_0304900, PF3D7_0305000, PF3D7_0305000, PF3D7_0305100, PF3D7_0305200, PF3D7_0305300, PF3D7_0305300, PF3D7_0305300 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 169,652 | +AT | 100% | intergenic (+80/‑137) | PF3D7_0303200 → / → PF3D7_0303200 | HAD superfamily protein, putative/HAD superfamily protein, putative | |
| NC_000521 | 198,327 | A→G | ? | 100% | intergenic (‑889/+215) | PF3D7_0303900 ← / ← PF3D7_0304000 | phosphatidylethanolamine‑binding protein, putative/inner membrane complex protein 1a, putative |
| NC_000521 | 249,808 | C→T | ? | 100% | intergenic (‑1538/‑1434) | PF3D7_0305100 ← / → PF3D7_0305200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 249,814 | C→T | ? | 100% | intergenic (‑1544/‑1428) | PF3D7_0305100 ← / → PF3D7_0305200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 260,501 | 332,000 bp x 3 | 100% | amplification | PF3D7_0305400–[PF3D7_0314700] | 259 genes PF3D7_0305400, PF3D7_0305400, PF3D7_0305500, PF3D7_0305600, PF3D7_0305700, PF3D7_0305700, PF3D7_0305700, PF3D7_0305800, PF3D7_0305900, PF3D7_0306000, PF3D7_0306100, PF3D7_0306100, PF3D7_0306200, PF3D7_0306200, PF3D7_0306200, PF3D7_0306200, PF3D7_0306200, PF3D7_0306300, PF3D7_0306300, PF3D7_0306300, PF3D7_0306300, PF3D7_0306300, PF3D7_0306400, PF3D7_0306500, PF3D7_0306600, PF3D7_0306700, PF3D7_0306700, PF3D7_0306700, PF3D7_0306700, PF3D7_0306800, PF3D7_0306800, PF3D7_0306900, PF3D7_0306900, PF3D7_0307000, PF3D7_0306900, PF3D7_0307100, PF3D7_0307100, PF3D7_0307200, PF3D7_0307200, PF3D7_0307200, PF3D7_0307300, PF3D7_0307400, PF3D7_0307500, PF3D7_0307500, PF3D7_0307500, PF3D7_0307500, PF3D7_0307500, PF3D7_0307600, PF3D7_0307600, PF3D7_0307600, PF3D7_0307700, PF3D7_0307700, PF3D7_0307700, PF3D7_0307700, PF3D7_0307700, PF3D7_0307700, PF3D7_0307700, PF3D7_0307800, PF3D7_0307900, PF3D7_0307900, PF3D7_0307900, PF3D7_0308000, PF3D7_0308100, PF3D7_0308200, PF3D7_0308200, PF3D7_0308300, PF3D7_0308400, PF3D7_0308500, PF3D7_0308500, PF3D7_0308500, PF3D7_0308600, PF3D7_0308700, PF3D7_0308700, PF3D7_0308800, PF3D7_0308800, PF3D7_0308900, PF3D7_0309000, PF3D7_0309000, PF3D7_0309000, PF3D7_0309000, PF3D7_0309000, PF3D7_0309000, PF3D7_0309100, PF3D7_0309100, PF3D7_0309100, PF3D7_0309100, PF3D7_0309100, PF3D7_0309200, PF3D7_0309200, PF3D7_0309200, PF3D7_0309300, PF3D7_0309400, PF3D7_0309500, PF3D7_0309500, PF3D7_0309600, PF3D7_0309700, PF3D7_0309800, PF3D7_0309800, PF3D7_0309800, PF3D7_0309800, PF3D7_0309800, PF3D7_0309800, PF3D7_0309800, PF3D7_0309900, PF3D7_0309900, PF3D7_0309900, PF3D7_0310000, PF3D7_0310000, PF3D7_0310000, PF3D7_0310100, PF3D7_0310100, PF3D7_0310100, PF3D7_0310100, PF3D7_0310100, PF3D7_0310200, PF3D7_0310300, PF3D7_0310300, PF3D7_0310400, PF3D7_0310500, PF3D7_0310600.1, PF3D7_0310600.1, PF3D7_0310700, PF3D7_0310700, PF3D7_0310800, PF3D7_0310900, PF3D7_0311000, PF3D7_0311000, PF3D7_0311100, PF3D7_0311100, PF3D7_0311100, PF3D7_0311100, PF3D7_0311200, PF3D7_0311200, PF3D7_0311300, PF3D7_0311300, PF3D7_0311300, PF3D7_0311300, PF3D7_0311400, PF3D7_0311400, PF3D7_0311500, PF3D7_0311600, PF3D7_0311600, PF3D7_0311600, PF3D7_0311600, PF3D7_0311600, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311700, PF3D7_0311800, PF3D7_0311800, PF3D7_0311800, PF3D7_0311900, PF3D7_0312000, PF3D7_0312000, PF3D7_0312000, PF3D7_0312000, PF3D7_0312100, PF3D7_0312200, PF3D7_0312300, PF3D7_0312400, PF3D7_0312400, PF3D7_0312400, PF3D7_0312400, PF3D7_0312400, PF3D7_0312400, PF3D7_0312400, PF3D7_0312500, PF3D7_0312600, PF3D7_0312700, PF3D7_0312800, PF3D7_0312800, PF3D7_0312800, PF3D7_0312900, PF3D7_0312900, PF3D7_0312900, PF3D7_0312900, PF3D7_0313000, PF3D7_0313000, PF3D7_0313100, PF3D7_0313100, PF3D7_0313100, PF3D7_0313100, PF3D7_0313200, PF3D7_0313300, PF3D7_0313300, PF3D7_0313300, PF3D7_0313300, PF3D7_0313300, PF3D7_0313400, PF3D7_0313500, PF3D7_0313600, PF3D7_0313600, PF3D7_0313600, PF3D7_0313600, PF3D7_0313600, PF3D7_0313600, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313700.1, PF3D7_0313800, PF3D7_0313800, PF3D7_0313800, PF3D7_0313800, PF3D7_0313800, PF3D7_0313800, PF3D7_0313800, PF3D7_0313900, PF3D7_0314000, PF3D7_0314000, PF3D7_0314000, PF3D7_0314000, PF3D7_0314000, PF3D7_0314000, PF3D7_0314000, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314100.1, PF3D7_0314200, PF3D7_0314300, PF3D7_0314400, PF3D7_0314500, PF3D7_0314500, PF3D7_0314600, [PF3D7_0314700] |
|
| NC_000521 | 269,598 | Δ6 bp | ? | 100% | coding (3684‑3689/11802 nt) | PF3D7_0305500 ← | conserved Plasmodium protein, unknown function |
| NC_000521 | 296,840 | Δ2 bp | ? | 100% | intergenic (‑746/‑1676) | PF3D7_0306300 ← / → PF3D7_0306400 | glutaredoxin 1/FAD‑dependent glycerol‑3‑phosphate dehydrogenase, putative |
| NC_000521 | 298,000 | Δ2 bp | ? | 100% | intergenic (‑1906/‑516) | PF3D7_0306300 ← / → PF3D7_0306400 | glutaredoxin 1/FAD‑dependent glycerol‑3‑phosphate dehydrogenase, putative |
| NC_000521 | 346,250 | +TCTTGTTCA | 100% | coding (319/6541 nt) | PF3D7_0307900 ← | conserved Plasmodium protein, unknown function | |
| NC_000521 | 352,751 | C→T | ? | 100% | intergenic (‑1099/‑798) | PF3D7_0307900 ← / → PF3D7_0308000 | conserved Plasmodium protein, unknown function/DNA polymerase delta small subunit, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 352,757 | C→T | ? | 100% | intergenic (‑1105/‑792) | PF3D7_0307900 ← / → PF3D7_0308000 | conserved Plasmodium protein, unknown function/DNA polymerase delta small subunit, putative |
| NC_000521 | 395,420 | T→A | ? | 100% | intergenic (‑816/‑2229) | PF3D7_0309200 ← / → PF3D7_0309300 | aurora‑related kinase 2, putative/N2227‑like protein, putative |
| NC_000521 | 406,325 | Δ1 bp | ? | 100% | intergenic (+885/‑1655) | PF3D7_0309500 → / → PF3D7_0309600 | asparagine synthetase [glutamine‑hydrolyzing], putative/60S acidic ribosomal protein P2 |
| NC_000521 | 419,078 | A→T | ? | 100% | intergenic (‑154/+115) | PF3D7_0309900 ← / ← PF3D7_0309900 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 426,049 | +T | ? | 100% | intergenic (+1369/‑1241) | PF3D7_0310100 → / → PF3D7_0310200 | calcium‑dependent protein kinase 3/phd finger protein, putative |
| NC_000521 | 486,436 | Δ2 bp | 100% | intergenic (‑2983/‑2367) | PF3D7_0311300 ← / → PF3D7_0311400 | phosphatidylinositol 3‑ and 4‑kinase, putative/kinase‑related protein PKRP, putative | |
| NC_000521 | 486,464 | (AT)15→14 | 100% | intergenic (‑3011/‑2339) | PF3D7_0311300 ← / → PF3D7_0311400 | phosphatidylinositol 3‑ and 4‑kinase, putative/kinase‑related protein PKRP, putative | |
| NC_000521 | 535,920 | C→T | ? | 100% | intergenic (+682/‑123) | PF3D7_0312800 → / → PF3D7_0312900 | 60S ribosomal protein L26, putative/uncharacterized protein |
| NC_000521 | 542,069 | +AT | 100% | intergenic (+39/‑78) | PF3D7_0313100 → / → PF3D7_0313100 | ubiquitin‑protein ligase, putative/ubiquitin‑protein ligase, putative | |
| NC_000521 | 555,547 | +AT | ? | 100% | intergenic (‑49/+137) | PF3D7_0313700.1 ← / ← PF3D7_0313700.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 556,162 | G→T | ? | 100% | intergenic (‑122/+17) | PF3D7_0313700.1 ← / ← PF3D7_0313700.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 556,165 | C→T | ? | 100% | intergenic (‑125/+14) | PF3D7_0313700.1 ← / ← PF3D7_0313700.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 556,168 | A→T | ? | 100% | intergenic (‑128/+11) | PF3D7_0313700.1 ← / ← PF3D7_0313700.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 558,066 | C→A | ? | 100% | intergenic (‑29/+92) | PF3D7_0313700.1 ← / ← PF3D7_0313700.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 562,293 | +AT | 100% | intergenic (+40/+73) | PF3D7_0313800 → / ← PF3D7_0313900 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_000521 | 572,024 | +AT | ? | 100% | intergenic (‑973/+642) | PF3D7_0314100.1 ← / ← PF3D7_0314200 | vesicle transport v‑SNARE protein, putative/conserved Plasmodium protein, unknown function |
| NC_000521 | 576,846 | C→A | ? | 100% | intergenic (‑23/+162) | PF3D7_0314200 ← / ← PF3D7_0314300 | conserved Plasmodium protein, unknown function/DER1‑like protein |
| NC_000521 | 597,901 | Δ2,600 bp | 100% | intergenic (‑5354/‑4095) | PF3D7_0314700 ← / → PF3D7_0314800 | RING finger protein RNF1/conserved Plasmodium protein, unknown function | |
| NC_000521 | 600,501 | 320,500 bp x 3 | 100% | amplification | PF3D7_0314800–[PF3D7_0321800] | 190 genes PF3D7_0314800, PF3D7_0314800, PF3D7_0314900, PF3D7_0315000, PF3D7_0315000, PF3D7_0315100, PF3D7_0315200, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315300, PF3D7_0315400, PF3D7_0315500, PF3D7_0315600, PF3D7_0315600, PF3D7_0315600, PF3D7_0315700, PF3D7_0315700, PF3D7_0315800, PF3D7_0315900, PF3D7_0315900, PF3D7_0316000, PF3D7_0316100, PF3D7_0316200, PF3D7_0316200, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316300.1, PF3D7_0316400, PF3D7_0316500, PF3D7_0316600, PF3D7_0316600, PF3D7_0316600, PF3D7_0316600, PF3D7_0316700, PF3D7_0316700, PF3D7_0316800, PF3D7_0316800, PF3D7_0316900, PF3D7_0316900, PF3D7_0317000, PF3D7_0317000, PF3D7_0317100, PF3D7_0317100, PF3D7_0317200, PF3D7_0317300, PF3D7_0317400, PF3D7_0317400, PF3D7_0317500, PF3D7_0317500, PF3D7_0317600, PF3D7_0317600, PF3D7_0317600, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317700, PF3D7_0317800, PF3D7_0317900, PF3D7_0317900, PF3D7_0318000, PF3D7_0318100, PF3D7_0318200, PF3D7_0318300, PF3D7_0318300, PF3D7_0318300, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318400, PF3D7_0318500, PF3D7_0318600, PF3D7_0318700, PF3D7_0318800, PF3D7_0318800, PF3D7_0318800, PF3D7_0318800, PF3D7_0318900, PF3D7_0318900, PF3D7_0318900, PF3D7_0319000, PF3D7_0319100, PF3D7_0319200, PF3D7_0319300, PF3D7_0319300, PF3D7_0319400, PF3D7_0319500, PF3D7_0319500, PF3D7_0319500, PF3D7_0319500, PF3D7_0319600, PF3D7_0319600, PF3D7_0319600, PF3D7_0319700, PF3D7_0319700, PF3D7_0319700, PF3D7_0319700, PF3D7_0319800, PF3D7_0319900, PF3D7_0320000, PF3D7_0320000, PF3D7_0320000, PF3D7_0320000, PF3D7_0320000, PF3D7_0320100, PF3D7_0320100, PF3D7_0320100, PF3D7_0320100, PF3D7_0320100, PF3D7_0320100, PF3D7_0320200, PF3D7_0320300, PF3D7_0320400, PF3D7_0320500, PF3D7_0320600, PF3D7_0320600, PF3D7_0320600, PF3D7_0320600, PF3D7_0320600, PF3D7_0320700, PF3D7_0320700, PF3D7_0320700, PF3D7_0320700, PF3D7_0320700, PF3D7_0320700, PF3D7_0320700, PF3D7_0320700, PF3D7_0320800, PF3D7_0320800, PF3D7_0320900, PF3D7_0320900, PF3D7_0320900, PF3D7_0321000, PF3D7_0321000, PF3D7_0321100, PF3D7_0321200, PF3D7_0321200, PF3D7_0321200, PF3D7_0321200, PF3D7_0321200, PF3D7_0321200, PF3D7_0321200, PF3D7_0321300, PF3D7_0321400, PF3D7_0321400, PF3D7_0321400, PF3D7_0321400, PF3D7_0321500, PF3D7_0321600, PF3D7_0321600, PF3D7_0321700, PF3D7_0321700, PF3D7_0321700, PF3D7_0321700, PF3D7_0321700, [PF3D7_0321800] |
|
| NC_000521 | 603,275 | Δ2 bp | ? | 100% | intergenic (‑10728/‑1319) | PF3D7_0314700 ← / → PF3D7_0314800 | RING finger protein RNF1/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 614,153 | Δ1 bp | ? | 100% | intergenic (‑731/‑2319) | PF3D7_0315100 ← / → PF3D7_0315200 | eukaryotic translation initiation factor 4E/circumsporozoite‑ and TRAP‑related protein |
| NC_000521 | 614,336 | C→A | ? | 100% | intergenic (‑914/‑2136) | PF3D7_0315100 ← / → PF3D7_0315200 | eukaryotic translation initiation factor 4E/circumsporozoite‑ and TRAP‑related protein |
| NC_000521 | 630,530 | Δ4 bp | ? | 100% | intergenic (+170/+78) | PF3D7_0315300 → / ← PF3D7_0315400 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 632,240 | Δ1 bp | ? | 100% | intergenic (‑859/+606) | PF3D7_0315400 ← / ← PF3D7_0315500 | conserved Plasmodium protein, unknown function/mitochondrial ribosomal protein L29/L47 precursor, putative |
| NC_000521 | 658,128 | C→T | 100% | intergenic (‑881/‑144) | PF3D7_0316200 ← / → PF3D7_0316300.1 | conserved Plasmodium protein, unknown function/inorganic pyrophosphatase, putative | |
| NC_000521 | 658,133 | C→T | 100% | intergenic (‑886/‑139) | PF3D7_0316200 ← / → PF3D7_0316300.1 | conserved Plasmodium protein, unknown function/inorganic pyrophosphatase, putative | |
| NC_000521 | 658,138 | C→T | ? | 100% | intergenic (‑891/‑134) | PF3D7_0316200 ← / → PF3D7_0316300.1 | conserved Plasmodium protein, unknown function/inorganic pyrophosphatase, putative |
| NC_000521 | 661,206 | C→T | ? | 100% | intergenic (+222/‑21) | PF3D7_0316300.1 → / → PF3D7_0316300.1 | inorganic pyrophosphatase, putative/inorganic pyrophosphatase, putative |
| NC_000521 | 684,219 | A→T | 100% | intergenic (‑534/‑2063) | PF3D7_0317000 ← / → PF3D7_0317100 | proteasome subunit alpha type‑3, putative/6‑cysteine protein | |
| NC_000521 | 686,194 | A→T | ? | 100% | intergenic (‑2509/‑88) | PF3D7_0317000 ← / → PF3D7_0317100 | proteasome subunit alpha type‑3, putative/6‑cysteine protein |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 696,043 | T→C | ? | 100% | intergenic (‑1228/+3501) | PF3D7_0317200 ← / ← PF3D7_0317300 | cdc2‑related protein kinase 4/conserved Plasmodium protein, unknown function |
| NC_000521 | 696,767 | +TTT | ? | 100% | intergenic (‑1952/+2777) | PF3D7_0317200 ← / ← PF3D7_0317300 | cdc2‑related protein kinase 4/conserved Plasmodium protein, unknown function |
| NC_000521 | 710,604 | +A | ? | 100% | intergenic (‑876/+1649) | PF3D7_0317300 ← / ← PF3D7_0317400 | conserved Plasmodium protein, unknown function/DNA replication complex GINS protein, putative |
| NC_000521 | 710,970 | +TA | ? | 100% | intergenic (‑1242/+1283) | PF3D7_0317300 ← / ← PF3D7_0317400 | conserved Plasmodium protein, unknown function/DNA replication complex GINS protein, putative |
| NC_000521 | 715,559 | (T)14→15 | 100% | intergenic (‑1477/+964) | PF3D7_0317400 ← / ← PF3D7_0317500 | DNA replication complex GINS protein, putative/kinesin‑5 | |
| NC_000521 | 715,854 | A→T | ? | 100% | intergenic (‑1772/+669) | PF3D7_0317400 ← / ← PF3D7_0317500 | DNA replication complex GINS protein, putative/kinesin‑5 |
| NC_000521 | 715,857 | A→T | ? | 100% | intergenic (‑1775/+666) | PF3D7_0317400 ← / ← PF3D7_0317500 | DNA replication complex GINS protein, putative/kinesin‑5 |
| NC_000521 | 727,036 | C→T | ? | 100% | intergenic (+906/‑1223) | PF3D7_0317600 → / → PF3D7_0317700 | 40S ribosomal protein S11, putative/CPSF (cleavage and polyadenylation specific factor), subunit A, putative |
| NC_000521 | 761,241 | +AT | ? | 100% | intergenic (‑949/+452) | PF3D7_0318300 ← / ← PF3D7_0318400 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 763,102 | +AT | 100% | intergenic (‑59/+48) | PF3D7_0318400 ← / ← PF3D7_0318400 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 766,439 | G→A | ? | 100% | intergenic (‑1000/‑1376) | PF3D7_0318400 ← / → PF3D7_0318500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_000521 | 789,472 | +T | 100% | intergenic (+660/‑386) | PF3D7_0318700 → / → PF3D7_0318800 | conserved Plasmodium protein, unknown function/triosephosphate isomerase, putative | |
| NC_000521 | 802,602 | C→T | ? | 100% | intergenic (‑19/+990) | PF3D7_0319100 ← / ← PF3D7_0319200 | E3 ubiquitin‑protein ligase RBX1, putative/CCR4 domain‑containing protein 4, putative |
| NC_000521 | 802,618 | C→T | ? | 100% | intergenic (‑35/+974) | PF3D7_0319100 ← / ← PF3D7_0319200 | E3 ubiquitin‑protein ligase RBX1, putative/CCR4 domain‑containing protein 4, putative |
| NC_000521 | 807,023 | Δ6 bp | ? | 100% | intergenic (‑711/‑249) | PF3D7_0319200 ← / → PF3D7_0319300 | CCR4 domain‑containing protein 4, putative/ubiquitin‑conjugating enzyme E2, putative |
| NC_000521 | 814,970 | Δ18 bp | ? | 100% | intergenic (+798/‑582) | PF3D7_0319400 → / → PF3D7_0319500 | kinesin‑8, putative/RNA‑binding protein, putative |
| NC_000521 | 837,583 | C→G | 100% | 100% | S30* (TCA→TGA) | PF3D7_0320000 → | protein phosphatase inhibitor 2 |
| NC_000521 | 896,036 | A→T | ? | 100% | intergenic (+199/‑10) | PF3D7_0321400 → / → PF3D7_0321400 | protein kinase, putative/protein kinase, putative |
| NC_000521 | 922,801 | 145,200 bp x 6 | 100% | amplification | PF3D7_0321900–PF3D7_0324900 | 73 genes PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0321900, PF3D7_0322000, PF3D7_0322100, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322200, PF3D7_0322300, PF3D7_0322400, PF3D7_0322400, PF3D7_0322500, PF3D7_0322600, PF3D7_0322600, PF3D7_0322700, PF3D7_0322700, PF3D7_0322800, PF3D7_0322800, PF3D7_0322800, PF3D7_0322800, PF3D7_0322800, PF3D7_0322900, PF3D7_0322900, PF3D7_0323000, PF3D7_0323000, PF3D7_0323000, PF3D7_0323100, PF3D7_0323200, PF3D7_0323300, PF3D7_0323400, PF3D7_0323500, PF3D7_0323500, PF3D7_0323500, PF3D7_0323500, PF3D7_0323600, PF3D7_0323600, PF3D7_0323600, PF3D7_0323700, PF3D7_0323800, PF3D7_0324000, PF3D7_0324100, PF3D7_0324100, PF3D7_0324200, PF3D7_0324200, PF3D7_0324300, PF3D7_0324300, PF3D7_0324400, PF3D7_0324400, PF3D7_0324500, PF3D7_0324500, PF3D7_0324600, PF3D7_0324600, PF3D7_0324800, PF3D7_0324800, PF3D7_0324900, PF3D7_0324900 |
|
| NC_000521 | 969,394 | Δ1 bp | ? | 100% | intergenic (‑192/‑1772) | PF3D7_0323000 ← / → PF3D7_0323100 | translation machinery‑associated protein 7, putative/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_000521 | 984,053 | Δ2 bp | ? | 100% | intergenic (‑87/‑2211) | PF3D7_0323400 ← / → PF3D7_0323500 | Rh5 interacting protein/survival motor neuron‑like protein |
| NC_000521 | 1,063,580 | T→G | ? | 100% | intergenic (‑25326/–) | PF3D7_0324900 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| NC_000521 | 1,063,582 | C→T | ? | 100% | intergenic (‑25328/–) | PF3D7_0324900 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| NC_000521 | 1,065,881 | +T | 100% | intergenic (‑27627/–) | PF3D7_0324900 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_000521 | 1,067,413 | Δ5 bp | 100% | intergenic (‑29159/–) | PF3D7_0324900 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_000521 | 1,067,420 | T→C | 100% | intergenic (‑29166/–) | PF3D7_0324900 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004318 | 1 | 70,900 bp x 17 | 100% | amplification | PF3D7_0400100–PF3D7_0400900 | PF3D7_0400100, PF3D7_0400100, PF3D7_0400300, PF3D7_0400300, PF3D7_0400400, PF3D7_0400400, PF3D7_0400500, PF3D7_0400500, PF3D7_0400700, PF3D7_0400700, PF3D7_0400800, PF3D7_0400800, PF3D7_0400900 | |
| NC_004318 | 36,138 | Δ2 bp | ? | 100% | intergenic (+860/‑171) | PF3D7_0400100 → / → PF3D7_0400100 | erythrocyte membrane protein 1, PfEMP1/erythrocyte membrane protein 1, PfEMP1 |
| NC_004318 | 73,401 | 13,300 bp x 3 | 100% | amplification | [PF3D7_0401000]–PF3D7_0401400 | [PF3D7_0401000], PF3D7_0401000, PF3D7_0401100, PF3D7_0401200, PF3D7_0401200, PF3D7_0401300, PF3D7_0401300, PF3D7_0401400, PF3D7_0401400 | |
| NC_004318 | 89,201 | 22,100 bp x 3 | 100% | amplification | PF3D7_0401600.1–PF3D7_0401900 | PF3D7_0401600.1, PF3D7_0401600.1, PF3D7_0401600.1, PF3D7_0401600.1, PF3D7_0401800, PF3D7_0401800, PF3D7_0401900 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 95,847 | Δ2 bp | ? | 100% | intergenic (‑2038/+7894) | PF3D7_0401600.1 ← / ← PF3D7_0401800 | rifin/Plasmodium exported protein (PHISTb), unknown function |
| NC_004318 | 123,601 | 48,000 bp x 3 | 100% | amplification | [PF3D7_0402100]–PF3D7_0402600 | [PF3D7_0402100], PF3D7_0402100, PF3D7_0402300, PF3D7_0402300, PF3D7_0402400, PF3D7_0402400, PF3D7_0402600, PF3D7_0402600 | |
| NC_004318 | 136,469 | C→T | ? | 100% | intergenic (‑11005/‑1171) | PF3D7_0402100 ← / → PF3D7_0402300 | Plasmodium exported protein (PHISTb), unknown function/reticulocyte binding protein homologue 1 |
| NC_004318 | 146,671 | +AA | 100% | intergenic (+18/+819) | PF3D7_0402300 → / ← PF3D7_0402400 | reticulocyte binding protein homologue 1/Plasmodium exported protein, unknown function | |
| NC_004318 | 146,959 | Δ1 bp | ? | 100% | intergenic (+306/+531) | PF3D7_0402300 → / ← PF3D7_0402400 | reticulocyte binding protein homologue 1/Plasmodium exported protein, unknown function |
| NC_004318 | 175,401 | 68,700 bp x 3 | 100% | amplification | [PF3D7_0403100]–PF3D7_0404500 | 40 genes [PF3D7_0403100], PF3D7_0403200, PF3D7_0403300, PF3D7_0403300, PF3D7_0403300, PF3D7_0403300, PF3D7_0403300, PF3D7_0403400, PF3D7_0403400, PF3D7_0403400, PF3D7_0403500, PF3D7_0403600, PF3D7_0403600, PF3D7_0403700, PF3D7_0403700, PF3D7_0403700, PF3D7_0403700, PF3D7_0403700, PF3D7_0403700, PF3D7_0403800, PF3D7_0403800, PF3D7_0403900, PF3D7_0403900, PF3D7_0404000, PF3D7_0404000, PF3D7_0404100, PF3D7_0404100, PF3D7_0404200, PF3D7_0404200, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404300, PF3D7_0404400, PF3D7_0404500 |
|
| NC_004318 | 214,729 | Δ22 bp | ? | 100% | intergenic (‑875/‑4337) | PF3D7_0403800 ← / → PF3D7_0403900 | alpha/beta hydrolase, putative/SET domain protein, putative |
| NC_004318 | 217,287 | (A)24→23 | 100% | intergenic (‑3433/‑1800) | PF3D7_0403800 ← / → PF3D7_0403900 | alpha/beta hydrolase, putative/SET domain protein, putative | |
| NC_004318 | 247,601 | 77,000 bp x 4 | 100% | amplification | PF3D7_0404600–[PF3D7_0406100] | 46 genes PF3D7_0404600, PF3D7_0404700, PF3D7_0404700, PF3D7_0404800, PF3D7_0404800, PF3D7_0404900, PF3D7_0405000, PF3D7_0405000, PF3D7_0405000, PF3D7_0405100, PF3D7_0405100, PF3D7_0405100, PF3D7_0405100, PF3D7_0405100, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405200, PF3D7_0405300, PF3D7_0405400, PF3D7_0405400, PF3D7_0405500, PF3D7_0405500, PF3D7_0405500, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405600, PF3D7_0405700, PF3D7_0405800, PF3D7_0405900, PF3D7_0405900, PF3D7_0405900, PF3D7_0405900, PF3D7_0406000, [PF3D7_0406100] |
|
| NC_004318 | 249,736 | Δ24 bp | 100% | coding (2006‑2029/12417 nt) | PF3D7_0404600 → | conserved Plasmodium membrane protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 250,093 | Δ6 bp | ? | 100% | coding (2363‑2368/12417 nt) | PF3D7_0404600 → | conserved Plasmodium membrane protein, unknown function |
| NC_004318 | 250,113 | (AAT)8→6 | 100% | coding (2383‑2388/12417 nt) | PF3D7_0404600 → | conserved Plasmodium membrane protein, unknown function | |
| NC_004318 | 250,395 | Δ6 bp | 100% | coding (2665‑2670/12417 nt) | PF3D7_0404600 → | conserved Plasmodium membrane protein, unknown function | |
| NC_004318 | 250,417 | C→A | 100% | T896N (ACC→AAC) | PF3D7_0404600 → | conserved Plasmodium membrane protein, unknown function | |
| NC_004318 | 250,420 | C→A | 100% | T897N (ACC→AAC) | PF3D7_0404600 → | conserved Plasmodium membrane protein, unknown function | |
| NC_004318 | 260,277 | Δ2 bp | ? | 100% | intergenic (+130/+176) | PF3D7_0404600 → / ← PF3D7_0404700 | conserved Plasmodium membrane protein, unknown function/dipeptidyl aminopeptidase 3 |
| NC_004318 | 268,925 | C→T | ? | 100% | intergenic (‑545/+35) | PF3D7_0404900 ← / ← PF3D7_0405000 | 6‑cysteine protein P41/ATP‑dependent RNA helicase DDX51, putative |
| NC_004318 | 277,995 | +ATAAATATATAT | ? | 100% | intergenic (‑1171/‑1077) | PF3D7_0405100 ← / → PF3D7_0405200 | protein transport protein Sec24B, putative/ag‑1 blood stage membrane protein homologue |
| NC_004318 | 278,558 | +ATATATAT | ? | 100% | intergenic (‑1734/‑514) | PF3D7_0405100 ← / → PF3D7_0405200 | protein transport protein Sec24B, putative/ag‑1 blood stage membrane protein homologue |
| NC_004318 | 282,397 | T→A | ? | 100% | intergenic (+414/+6) | PF3D7_0405200 → / ← PF3D7_0405300 | ag‑1 blood stage membrane protein homologue/liver specific protein 2, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 305,266 | +TATT | ? | 100% | intergenic (+104/‑33) | PF3D7_0405600 → / → PF3D7_0405600 | TMEM33 domain‑containing protein, putative/TMEM33 domain‑containing protein, putative |
| NC_004318 | 313,148 | Δ2 bp | ? | 100% | intergenic (‑155/‑2413) | PF3D7_0405700 ← / → PF3D7_0405800 | lysine decarboxylase, putative/conserved protein, unknown function |
| NC_004318 | 313,650 | Δ12 bp | ? | 100% | intergenic (‑657/‑1901) | PF3D7_0405700 ← / → PF3D7_0405800 | lysine decarboxylase, putative/conserved protein, unknown function |
| NC_004318 | 320,255 | Δ1 bp | ? | 100% | intergenic (‑1077/‑764) | PF3D7_0405900 ← / → PF3D7_0406000 | apical sushi protein/conserved protein, unknown function |
| NC_004318 | 329,101 | 138,000 bp x 3 | 100% | amplification | PF3D7_0406200–[PF3D7_0410000] | 115 genes PF3D7_0406200, PF3D7_0406400, PF3D7_0406400, PF3D7_0406400, PF3D7_0406400, PF3D7_0406400, PF3D7_0406400, PF3D7_0406400, PF3D7_0406500, PF3D7_0406500, PF3D7_0406600, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406700, PF3D7_0406800, PF3D7_0406800, PF3D7_0406800, PF3D7_0406800, PF3D7_0406800, PF3D7_0406900, PF3D7_0406900, PF3D7_0406900, PF3D7_0406900, PF3D7_0406900, PF3D7_0406900, PF3D7_0406900, PF3D7_0406900, PF3D7_0407000, PF3D7_0407100, PF3D7_0407100, PF3D7_0407200, PF3D7_0407200, PF3D7_0407200, PF3D7_0407200, PF3D7_0407200, PF3D7_0407300, PF3D7_0407400, PF3D7_0407500, PF3D7_0407500, PF3D7_0407500, PF3D7_0407600, PF3D7_0407700, PF3D7_0407700, PF3D7_0407700, PF3D7_0407700, PF3D7_0407700, PF3D7_0407700, PF3D7_0407800, PF3D7_0407900, PF3D7_0408000, PF3D7_0408100, PF3D7_0408200, PF3D7_0408300, PF3D7_0408300, PF3D7_0408300, PF3D7_0408300, PF3D7_0408300, PF3D7_0408400, PF3D7_0408400, PF3D7_0408400, PF3D7_0408500, PF3D7_0408600, PF3D7_0408700, PF3D7_0408700, PF3D7_0408700, PF3D7_0408700, PF3D7_0408700, PF3D7_0408700, PF3D7_0408700, PF3D7_0408700, PF3D7_0408800, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0408900.1, PF3D7_0409000, PF3D7_0409100, PF3D7_0409100, PF3D7_0409200, PF3D7_0409300, PF3D7_0409300, PF3D7_0409300, PF3D7_0409400, PF3D7_0409500, PF3D7_0409500, PF3D7_0409600, PF3D7_0409700, PF3D7_0409700, PF3D7_0409700, PF3D7_0409700, PF3D7_0409800, PF3D7_0409900, PF3D7_0409900, PF3D7_0409900, PF3D7_0409900, PF3D7_0409900, PF3D7_0409900, PF3D7_0409900, [PF3D7_0410000] |
|
| NC_004318 | 330,247 | +AT | 100% | intergenic (+558/‑1796) | PF3D7_0406200 → / → PF3D7_0406400 | sexual stage‑specific protein precursor/cytosolic glyoxalase II | |
| NC_004318 | 330,615 | G→A | 100% | intergenic (+926/‑1428) | PF3D7_0406200 → / → PF3D7_0406400 | sexual stage‑specific protein precursor/cytosolic glyoxalase II | |
| NC_004318 | 330,981 | Δ26 bp | 100% | intergenic (+1292/‑1037) | PF3D7_0406200 → / → PF3D7_0406400 | sexual stage‑specific protein precursor/cytosolic glyoxalase II | |
| NC_004318 | 331,005 | Δ26 bp | 100% | intergenic (+1316/‑1013) | PF3D7_0406200 → / → PF3D7_0406400 | sexual stage‑specific protein precursor/cytosolic glyoxalase II | |
| NC_004318 | 332,409 | Δ2 bp | ? | 100% | intergenic (+17/‑159) | PF3D7_0406400 → / → PF3D7_0406400 | cytosolic glyoxalase II/cytosolic glyoxalase II |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 338,977 | +TTTTTATTTTATCCC | ? | 100% | coding (5078/9451 nt) | PF3D7_0406500 ← | NYN domain‑containing protein, putative |
| NC_004318 | 343,441 | Δ21 bp | 100% | coding (594‑614/9451 nt) | PF3D7_0406500 ← | NYN domain‑containing protein, putative | |
| NC_004318 | 343,605 | A→T | ? | 100% | N150K (AAT→AAA) | PF3D7_0406500 ← | NYN domain‑containing protein, putative |
| NC_004318 | 346,284 | C→T | ? | 100% | intergenic (‑2230/‑24) | PF3D7_0406500 ← / → PF3D7_0406600 | NYN domain‑containing protein, putative/conserved protein, unknown function |
| NC_004318 | 346,288 | A→T | ? | 100% | intergenic (‑2234/‑20) | PF3D7_0406500 ← / → PF3D7_0406600 | NYN domain‑containing protein, putative/conserved protein, unknown function |
| NC_004318 | 346,293 | C→T | ? | 100% | intergenic (‑2239/‑15) | PF3D7_0406500 ← / → PF3D7_0406600 | NYN domain‑containing protein, putative/conserved protein, unknown function |
| NC_004318 | 351,078 | +AAATAAAATGAAATA | ? | 100% | intergenic (+41/‑132) | PF3D7_0406700 → / → PF3D7_0406700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004318 | 355,645 | A→T | 100% | V1203E (GTA→GAA) | PF3D7_0406900 ← | conserved Plasmodium protein, unknown function | |
| NC_004318 | 355,717 | +CATTTTTTT | 100% | coding (3038/4527 nt) | PF3D7_0406900 ← | conserved Plasmodium protein, unknown function | |
| NC_004318 | 355,743 | (TCATTTTTT)2→3 | 100% | coding (3012/4527 nt) | PF3D7_0406900 ← | conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 370,000 | Δ4 bp | ? | 100% | intergenic (+61/‑46) | PF3D7_0407500 → / → PF3D7_0407500 | mitochondrial carrier protein, putative/mitochondrial carrier protein, putative |
| NC_004318 | 370,013 | (AT)8→6 | 100% | intergenic (+74/‑33) | PF3D7_0407500 → / → PF3D7_0407500 | mitochondrial carrier protein, putative/mitochondrial carrier protein, putative | |
| NC_004318 | 372,890 | Δ1 bp | ? | 100% | intergenic (+1620/‑149) | PF3D7_0407500 → / → PF3D7_0407600 | mitochondrial carrier protein, putative/conserved Plasmodium protein, unknown function |
| NC_004318 | 374,625 | Δ27 bp | ? | 100% | coding (1587‑1613/3639 nt) | PF3D7_0407600 → | conserved Plasmodium protein, unknown function |
| NC_004318 | 375,142 | Δ72 bp | 100% | coding (2104‑2175/3639 nt) | PF3D7_0407600 → | conserved Plasmodium protein, unknown function | |
| NC_004318 | 401,288 | +TATATATA | 100% | intergenic (+595/‑178) | PF3D7_0408100 → / → PF3D7_0408200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004318 | 406,744 | +ATATATATAT | ? | 100% | intergenic (‑85/+45) | PF3D7_0408400 ← / ← PF3D7_0408400 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004318 | 424,840 | Δ2 bp | ? | 100% | intergenic (+90/‑80) | PF3D7_0408900.1 → / → PF3D7_0408900.1 | tRNA N6‑adenosine threonylcarbamoyltransferase/tRNA N6‑adenosine threonylcarbamoyltransferase |
| NC_004318 | 457,880 | G→T | ? | 100% | intergenic (+156/‑18) | PF3D7_0409700 → / → PF3D7_0409700 | peptide chain release factor 2/peptide chain release factor 2 |
| NC_004318 | 457,888 | C→T | ? | 100% | intergenic (+164/‑10) | PF3D7_0409700 → / → PF3D7_0409700 | peptide chain release factor 2/peptide chain release factor 2 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 470,801 | 22,900 bp x 3 | 100% | amplification | PF3D7_0410300–PF3D7_0410900 | PF3D7_0410300, PF3D7_0410400, PF3D7_0410500, PF3D7_0410600, PF3D7_0410600, PF3D7_0410600, PF3D7_0410700, PF3D7_0410800, PF3D7_0410900 | |
| NC_004318 | 470,913 | (T)31→30 | 100% | intergenic (‑346/+3) | PF3D7_0410300 ← / ← PF3D7_0410300 | protein phosphatase PPM1, putative/protein phosphatase PPM1, putative | |
| NC_004318 | 499,201 | 48,200 bp x 3 | 100% | amplification | [PF3D7_0411000]–PF3D7_0412400 | 19 genes [PF3D7_0411000], PF3D7_0411100, PF3D7_0411200, PF3D7_0411300, PF3D7_0411400, PF3D7_0411500, PF3D7_0411600, PF3D7_0411700, PF3D7_0411800, PF3D7_0411900, PF3D7_0411900, PF3D7_0411900, PF3D7_0411900, PF3D7_0411900, PF3D7_0412000, PF3D7_0412100, PF3D7_0412200, PF3D7_0412300, PF3D7_0412400 |
|
| NC_004318 | 548,501 | 11,900 bp x 6 | 100% | amplification | PF3D7_0412400–PF3D7_0412500 | PF3D7_0412400, PF3D7_0412500 | |
| NC_004318 | 561,701 | 23,500 bp x 4 | 100% | amplification | [PF3D7_0412700]–PF3D7_0412900 | [PF3D7_0412700], PF3D7_0412700, PF3D7_0412800, PF3D7_0412900, PF3D7_0412900 | |
| NC_004318 | 592,001 | 8,000 bp x 6 | 100% | amplification | [PF3D7_0413100]–PF3D7_0413100 | [PF3D7_0413100], PF3D7_0413100 | |
| NC_004318 | 603,101 | 38,700 bp x 3 | 100% | amplification | PF3D7_0413200–PF3D7_0414100 | 38 genes PF3D7_0413200, PF3D7_0413200, PF3D7_0413300, PF3D7_0413300, PF3D7_0413500, PF3D7_0413600, PF3D7_0413600, PF3D7_0413700, PF3D7_0413800, PF3D7_0413900, PF3D7_0413900, PF3D7_0413900, PF3D7_0413900, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414000, PF3D7_0414100, PF3D7_0414100, PF3D7_0414100, PF3D7_0414100 |
|
| NC_004318 | 623,351 | Δ2 bp | ? | 100% | intergenic (‑90/+58) | PF3D7_0413900 ← / ← PF3D7_0413900 | ubiquitin carboxyl‑terminal hydrolase 13, putative/ubiquitin carboxyl‑terminal hydrolase 13, putative |
| NC_004318 | 627,430 | Δ2 bp | ? | 100% | intergenic (‑37/+133) | PF3D7_0414000 ← / ← PF3D7_0414000 | structural maintenance of chromosomes protein 3, putative/structural maintenance of chromosomes protein 3, putative |
| NC_004318 | 641,801 | Δ2,800 bp | 100% | intergenic (‑2896/+2789) | PF3D7_0414100 ← / ← PF3D7_0414200.1 | conserved Plasmodium membrane protein, unknown function/calmodulin‑like protein | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 644,601 | 462,500 bp x 4 | 100% | amplification | PF3D7_0414200.1–[PF3D7_0424400] | 260 genes PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414200.1, PF3D7_0414300, PF3D7_0414300, PF3D7_0414300, PF3D7_0414300, PF3D7_0414400, PF3D7_0414400, PF3D7_0414500, PF3D7_0414500, PF3D7_0414500, PF3D7_0414500, PF3D7_0414500, PF3D7_0414500, PF3D7_0414500, PF3D7_0414500, PF3D7_0414600, PF3D7_0414600, PF3D7_0414700, PF3D7_0414800, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0414900, PF3D7_0415000, PF3D7_0415100, PF3D7_0415200, PF3D7_0415300, PF3D7_0415300, PF3D7_0415400, PF3D7_0415500, PF3D7_0415500, PF3D7_0415600, PF3D7_0415700, PF3D7_0415800, PF3D7_0415900, PF3D7_0415900, PF3D7_0416000, PF3D7_0416000, PF3D7_0416000, PF3D7_0416000, PF3D7_0416000, PF3D7_0416000, PF3D7_0416000, PF3D7_0416100, PF3D7_0416200, PF3D7_0416300, PF3D7_0416400, PF3D7_0416400, PF3D7_0416400, PF3D7_0416400, PF3D7_0416500, PF3D7_0416600, PF3D7_0416700, PF3D7_0416800, PF3D7_0416800, PF3D7_0416800, PF3D7_0416900, PF3D7_0416900, PF3D7_0417000, PF3D7_0417000, PF3D7_0417100, PF3D7_0417100, PF3D7_0417100, PF3D7_0417100, PF3D7_0417200, PF3D7_0417300, PF3D7_0417300, PF3D7_0417300, PF3D7_0417300, PF3D7_0417400, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417500.1, PF3D7_0417600, PF3D7_0417600, PF3D7_0417600, PF3D7_0417600, PF3D7_0417700, PF3D7_0417700, PF3D7_0417700, PF3D7_0417700, PF3D7_0417700, PF3D7_0417700, PF3D7_0417800, PF3D7_0417900, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418000, PF3D7_0418100, PF3D7_0418200, PF3D7_0418300, PF3D7_0418400, PF3D7_0418400, PF3D7_0418400, PF3D7_0418500, PF3D7_0418500, PF3D7_0418500, PF3D7_0418500, PF3D7_0418500, PF3D7_0418500, PF3D7_0418600, PF3D7_0418700, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418800, PF3D7_0418900, PF3D7_0418900, PF3D7_0418900, PF3D7_0418900, PF3D7_0418900, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419000, PF3D7_0419100, PF3D7_0419100, PF3D7_0419200, PF3D7_0419300, PF3D7_0419300, PF3D7_0419400, PF3D7_0419400, PF3D7_0419400, PF3D7_0419400, PF3D7_0419500, PF3D7_0419600, PF3D7_0419600, PF3D7_0419700, PF3D7_0419800, PF3D7_0419900, PF3D7_0419900, PF3D7_0419900, PF3D7_0419900, PF3D7_0419900, PF3D7_0419900, PF3D7_0420000, PF3D7_0420100, PF3D7_0420200, PF3D7_0420300, PF3D7_0420400, PF3D7_0420500, PF3D7_0420500, PF3D7_0420500, PF3D7_0420500, PF3D7_0420500, PF3D7_0420500, PF3D7_0420600, PF3D7_0420700, PF3D7_0420700, PF3D7_0420800, PF3D7_0420900, PF3D7_0420900, PF3D7_0421000, PF3D7_0421100, PF3D7_0421100, PF3D7_0421200, PF3D7_0421200, PF3D7_0421300, PF3D7_0421300, PF3D7_0421400, PF3D7_0421700, PF3D7_0421700, PF3D7_0421700, PF3D7_0421700, PF3D7_0421700, PF3D7_0421700, PF3D7_0421800, PF3D7_0421900, PF3D7_0422000, PF3D7_0422000, PF3D7_0422000, PF3D7_0422000, PF3D7_0422000, PF3D7_0422100, PF3D7_0422200, PF3D7_0422300, PF3D7_0422300, PF3D7_0422300, PF3D7_0422400, PF3D7_0422400, PF3D7_0422500, PF3D7_0422600, PF3D7_0422700, PF3D7_0422800, PF3D7_0422800, PF3D7_0422800, PF3D7_0422800, PF3D7_0422800, PF3D7_0422800, PF3D7_0422800, PF3D7_0422900, PF3D7_0422900, PF3D7_0422900, PF3D7_0422900, PF3D7_0423000, PF3D7_0423100, PF3D7_0423100, PF3D7_0423200, PF3D7_0423200, PF3D7_0423300, PF3D7_0423400, PF3D7_0423500, PF3D7_0423500, PF3D7_0423600, PF3D7_0423700, PF3D7_0423800, PF3D7_0423800, PF3D7_0423900, PF3D7_0423900, PF3D7_0424000, PF3D7_0424000, PF3D7_0424100, PF3D7_0424100, PF3D7_0424200, PF3D7_0424200, PF3D7_0424400, [PF3D7_0424400] |
|
| NC_004318 | 651,059 | Δ1 bp | ? | 100% | intergenic (‑328/‑1291) | PF3D7_0414300 ← / → PF3D7_0414400 | Rab5‑interacting protein, putative/conserved Plasmodium protein, unknown function |
| NC_004318 | 705,724 | C→T | 100% | intergenic (‑1562/‑805) | PF3D7_0416000 ← / → PF3D7_0416100 | RNA‑binding protein, putative/glutamyl‑tRNA(Gln) amidotransferase subunit A | |
| NC_004318 | 722,206 | C→T | ? | 100% | intergenic (+202/‑106) | PF3D7_0416400 → / → PF3D7_0416400 | histone acetyltransferase, putative/histone acetyltransferase, putative |
| NC_004318 | 739,929 | +AT | 100% | intergenic (‑57/‑2220) | PF3D7_0416900 ← / → PF3D7_0417000 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004318 | 740,104 | C→T | ? | 100% | intergenic (‑232/‑2045) | PF3D7_0416900 ← / → PF3D7_0417000 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004318 | 789,416 | +ATAT | 100% | intergenic (‑74/‑1308) | PF3D7_0417800 ← / → PF3D7_0417900 | cdc2‑related protein kinase 1/conserved Plasmodium protein, unknown function | |
| NC_004318 | 831,880 | T→A | ? | 100% | intergenic (‑186/+44) | PF3D7_0418500 ← / ← PF3D7_0418500 | trafficking protein particle complex subunit 3, putative/trafficking protein particle complex subunit 3, putative |
| NC_004318 | 877,565 | Δ2 bp | 100% | intergenic (‑2044/‑456) | PF3D7_0419800 ← / → PF3D7_0419900 | 60S ribosomal protein L7ae/L30e, putative/phosphatidylinositol 4‑kinase, putative | |
| NC_004318 | 877,589 | (AT)13→12 | 100% | intergenic (‑2068/‑432) | PF3D7_0419800 ← / → PF3D7_0419900 | 60S ribosomal protein L7ae/L30e, putative/phosphatidylinositol 4‑kinase, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 914,053 | Δ2 bp | ? | 100% | intergenic (+2082/‑3936) | PF3D7_0420200 → / → PF3D7_0420300 | holo‑[acyl‑carrier‑protein] synthase, putative/AP2 domain transcription factor, putative |
| NC_004318 | 1,016,264 | C→T | ? | 100% | K328K (AAG→AAA) | PF3D7_0422200 ← | erythrocyte membrane‑associated antigen |
| NC_004318 | 1,028,193 | Δ4 bp | ? | 100% | intergenic (+794/‑1133) | PF3D7_0422400 → / → PF3D7_0422500 | 40S ribosomal protein S19/pre‑mRNA‑splicing helicase BRR2, putative |
| NC_004318 | 1,028,222 | (ATTT)8→7 | 100% | intergenic (+823/‑1104) | PF3D7_0422400 → / → PF3D7_0422500 | 40S ribosomal protein S19/pre‑mRNA‑splicing helicase BRR2, putative | |
| NC_004318 | 1,041,713 | T→A | ? | 100% | intergenic (+71/‑851) | PF3D7_0422700 → / → PF3D7_0422800 | eukaryotic initiation factor 4A‑III, putative/serpentine receptor, putative |
| NC_004318 | 1,052,224 | Δ1 bp | ? | 100% | coding (783/1431 nt) | PF3D7_0423300 ← | conserved Plasmodium protein, unknown function |
| NC_004318 | 1,052,232 | Δ58 bp | ? | 100% | coding (718‑775/1431 nt) | PF3D7_0423300 ← | conserved Plasmodium protein, unknown function |
| NC_004318 | 1,061,234 | Δ2 bp | ? | 100% | intergenic (+683/+555) | PF3D7_0423500 → / ← PF3D7_0423600 | glideosome associated protein with multiple membrane spans 2/conserved Plasmodium protein, unknown function |
| NC_004318 | 1,070,524 | Δ2 bp | ? | 100% | intergenic (‑3896/+910) | PF3D7_0423600 ← / ← PF3D7_0423700 | conserved Plasmodium protein, unknown function/early transcribed membrane protein 4 |
| NC_004318 | 1,074,549 | Δ1 bp | ? | 100% | intergenic (‑2704/‑1798) | PF3D7_0423700 ← / → PF3D7_0423800 | early transcribed membrane protein 4/cysteine‑rich protective antigen |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004318 | 1,110,401 | 90,100 bp x 6 | 100% | amplification | [PF3D7_0424500]–PF3D7_0426000 | 27 genes [PF3D7_0424500], PF3D7_0424500, PF3D7_0424600, PF3D7_0424600, PF3D7_0424700, PF3D7_0424700, PF3D7_0424700, PF3D7_0424800, PF3D7_0424800, PF3D7_0424900, PF3D7_0424900, PF3D7_0425100, PF3D7_0425100, PF3D7_0425200, PF3D7_0425200, PF3D7_0425400, PF3D7_0425400, PF3D7_0425500, PF3D7_0425500, PF3D7_0425700, PF3D7_0425700, PF3D7_0425800, PF3D7_0425800, PF3D7_0425900, PF3D7_0425900, PF3D7_0426000, PF3D7_0426000 |
|
| NC_004318 | 1,182,121 | C→T | ? | 100% | intergenic (‑1895/–) | PF3D7_0426000 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| NC_004318 | 1,200,373 | Δ13 bp | 100% | intergenic (‑20147/–) | PF3D7_0426000 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004318 | 1,200,440 | C→T | 100% | intergenic (‑20214/–) | PF3D7_0426000 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 1 | 37,100 bp x 14 | 100% | amplification | PF3D7_0100100–[PF3D7_0100100] | PF3D7_0100100, [PF3D7_0100100] | |
| NC_004325 | 42,401 | 9,300 bp x 5 | 100% | amplification | [PF3D7_0100300]–PF3D7_0100400 | [PF3D7_0100300], PF3D7_0100300, PF3D7_0100400, PF3D7_0100400 | |
| NC_004325 | 62,101 | 122,000 bp x 3 | 100% | amplification | PF3D7_0100900–[PF3D7_0104200] | 76 genes PF3D7_0100900, PF3D7_0100900, PF3D7_0101000, PF3D7_0101000, PF3D7_0101100, PF3D7_0101100, PF3D7_0101200, PF3D7_0101200, PF3D7_0101300, PF3D7_0101300, PF3D7_0101600, PF3D7_0101600, PF3D7_0101800, PF3D7_0101800, PF3D7_0101900, PF3D7_0101900, PF3D7_0102200, PF3D7_0102200, PF3D7_0102300, PF3D7_0102300, PF3D7_0102500, PF3D7_0102500, PF3D7_0102500, PF3D7_0102500, PF3D7_0102600, PF3D7_0102600, PF3D7_0102600, PF3D7_0102700, PF3D7_0102700, PF3D7_0102800, PF3D7_0102900, PF3D7_0103000, PF3D7_0103000, PF3D7_0103000, PF3D7_0103000, PF3D7_0103000, PF3D7_0103000, PF3D7_0103000, PF3D7_0103100, PF3D7_0103200, PF3D7_0103200, PF3D7_0103300, PF3D7_0103400, PF3D7_0103500, PF3D7_0103500, PF3D7_0103500, PF3D7_0103500, PF3D7_0103500, PF3D7_0103500, PF3D7_0103500, PF3D7_0103600, PF3D7_0103600, PF3D7_0103600, PF3D7_0103700, PF3D7_0103700, PF3D7_0103700, PF3D7_0103700, PF3D7_0103700, PF3D7_0103700, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103800, PF3D7_0103900, PF3D7_0104000, PF3D7_0104000, PF3D7_0104000, PF3D7_0104100, PF3D7_0104100, [PF3D7_0104200] |
|
| NC_004325 | 147,464 | Δ2 bp | ? | 100% | intergenic (‑1068/+450) | PF3D7_0103300 ← / ← PF3D7_0103400 | conserved protein, unknown function/zinc‑carboxypeptidase, putative |
| NC_004325 | 165,813 | +A | 100% | intergenic (+5/‑220) | PF3D7_0103600 → / → PF3D7_0103600 | ATP‑dependent RNA helicase, putative/ATP‑dependent RNA helicase, putative | |
| NC_004325 | 172,503 | Δ2 bp | ? | 100% | intergenic (‑1230/‑360) | PF3D7_0103800 ← / → PF3D7_0103900 | actin‑related protein/parasite‑infected erythrocyte surface protein |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 176,731 | C→T | ? | 100% | intergenic (+355/‑1356) | PF3D7_0104000 → / → PF3D7_0104100 | thrombospondin‑related sporozoite protein/conserved Plasmodium membrane protein, unknown function |
| NC_004325 | 184,353 | C→T | ? | 100% | intergenic (‑131/‑5916) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 184,358 | C→T | ? | 100% | intergenic (‑136/‑5911) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 184,363 | C→T | ? | 100% | intergenic (‑141/‑5906) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 184,368 | C→T | ? | 100% | intergenic (‑146/‑5901) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 184,375 | A→T | ? | 100% | intergenic (‑153/‑5894) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 185,710 | Δ8 bp | ? | 100% | intergenic (‑1488/‑4552) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 186,695 | Δ2 bp | ? | 100% | intergenic (‑2473/‑3573) | PF3D7_0104200 ← / → PF3D7_0104300 | StAR‑related lipid transfer protein/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 190,318 | Δ6 bp | ? | 100% | coding (50‑55/7048 nt) | PF3D7_0104300 → | ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 190,342 | (ATA)10→8 | 100% | coding (74‑79/7048 nt) | PF3D7_0104300 → | ubiquitin carboxyl‑terminal hydrolase 1, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 190,401 | 78,800 bp x 3 | 100% | amplification | [PF3D7_0104300]–PF3D7_0106300 | 33 genes [PF3D7_0104300], PF3D7_0104300, PF3D7_0104300, PF3D7_0104400, PF3D7_0104500, PF3D7_0104600, PF3D7_0104700, PF3D7_0104800, PF3D7_0104900, PF3D7_0105000, PF3D7_0105100, PF3D7_0105200, PF3D7_0105300, PF3D7_0105300, PF3D7_0105400.1, PF3D7_0105400.1, PF3D7_0105400.1, PF3D7_0105400.1, PF3D7_0105500, PF3D7_0105600, PF3D7_0105600, PF3D7_0105600, PF3D7_0105700, PF3D7_0105800, PF3D7_0105800, PF3D7_0105900, PF3D7_0106000, PF3D7_0106100, PF3D7_0106200, PF3D7_0106200, PF3D7_0106300, PF3D7_0106300, PF3D7_0106300 |
|
| NC_004325 | 197,490 | Δ7 bp | ? | 100% | intergenic (+174/‑54) | PF3D7_0104300 → / → PF3D7_0104300 | ubiquitin carboxyl‑terminal hydrolase 1, putative/ubiquitin carboxyl‑terminal hydrolase 1, putative |
| NC_004325 | 215,707 | Δ2 bp | ? | 100% | intergenic (+2702/‑68) | PF3D7_0104700 → / → PF3D7_0104800 | major facilitator superfamily‑related transporter, putative/novel putative transporter 1, putative |
| NC_004325 | 226,361 | Δ1 bp | ? | 100% | intergenic (‑582/+320) | PF3D7_0105300 ← / ← PF3D7_0105400.1 | cyclase‑associated protein/conserved Plasmodium protein, unknown function |
| NC_004325 | 235,891 | Δ22 bp | 100% | intergenic (‑1489/‑2754) | PF3D7_0105600 ← / → PF3D7_0105700 | conserved Plasmodium protein, unknown function/asparagine‑rich antigen Pfa35‑2 | |
| NC_004325 | 235,912 | (AT)21→10 | 100% | intergenic (‑1510/‑2733) | PF3D7_0105600 ← / → PF3D7_0105700 | conserved Plasmodium protein, unknown function/asparagine‑rich antigen Pfa35‑2 | |
| NC_004325 | 248,977 | C→T | ? | 100% | intergenic (+1120/+254) | PF3D7_0105700 → / ← PF3D7_0105800 | asparagine‑rich antigen Pfa35‑2/cyclin‑dependent kinases regulatory subunit, putative |
| NC_004325 | 272,601 | 36,700 bp x 3 | 100% | amplification | PF3D7_0106400–PF3D7_0107500 | 40 genes PF3D7_0106400, PF3D7_0106400, PF3D7_0106400, PF3D7_0106500, PF3D7_0106600, PF3D7_0106700, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106800, PF3D7_0106900, PF3D7_0107000.1, PF3D7_0107000.1, PF3D7_0107000.1, PF3D7_0107000.1, PF3D7_0107000.1, PF3D7_0107000.1, PF3D7_0107100, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107200, PF3D7_0107300, PF3D7_0107300, PF3D7_0107400, PF3D7_0107500, PF3D7_0107500, PF3D7_0107500, PF3D7_0107500 |
|
| NC_004325 | 273,962 | Δ1 bp | 100% | intergenic (+558/‑353) | PF3D7_0106400 → / → PF3D7_0106500 | pre‑rRNA‑processing protein TSR2, putative/conserved Plasmodium protein, unknown function | |
| NC_004325 | 286,630 | C→T | ? | 100% | intergenic (+1171/‑321) | PF3D7_0106700 → / → PF3D7_0106800 | small ribosomal subunit assembling AARP2 protein/ras‑related protein Rab‑5C |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 286,641 | G→T | ? | 100% | intergenic (+1182/‑310) | PF3D7_0106700 → / → PF3D7_0106800 | small ribosomal subunit assembling AARP2 protein/ras‑related protein Rab‑5C |
| NC_004325 | 288,304 | Δ12 bp | ? | 100% | intergenic (+38/‑207) | PF3D7_0106800 → / → PF3D7_0106800 | ras‑related protein Rab‑5C/ras‑related protein Rab‑5C |
| NC_004325 | 288,488 | +T | 100% | intergenic (+222/‑34) | PF3D7_0106800 → / → PF3D7_0106800 | ras‑related protein Rab‑5C/ras‑related protein Rab‑5C | |
| NC_004325 | 288,502 | (T)14→15 | 100% | intergenic (+236/‑20) | PF3D7_0106800 → / → PF3D7_0106800 | ras‑related protein Rab‑5C/ras‑related protein Rab‑5C | |
| NC_004325 | 291,538 | +ATGAAAAAG | 100% | coding (1153/2205 nt) | PF3D7_0106900 → | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase, putative | |
| NC_004325 | 293,767 | Δ14 bp | ? | 100% | intergenic (+2/‑180) | PF3D7_0107000.1 → / → PF3D7_0107000.1 | centrin‑1/centrin‑1 |
| NC_004325 | 293,830 | Δ6 bp | ? | 100% | intergenic (+65/‑125) | PF3D7_0107000.1 → / → PF3D7_0107000.1 | centrin‑1/centrin‑1 |
| NC_004325 | 294,071 | +ATAT | 100% | intergenic (+44/‑179) | PF3D7_0107000.1 → / → PF3D7_0107000.1 | centrin‑1/centrin‑1 | |
| NC_004325 | 294,391 | Δ12 bp | ? | 100% | intergenic (+55/‑31) | PF3D7_0107000.1 → / → PF3D7_0107000.1 | centrin‑1/centrin‑1 |
| NC_004325 | 313,164 | (A)24→28 | 100% | intergenic (‑3907/‑1454) | PF3D7_0107500 ← / → PF3D7_0107600 | Niemann‑Pick type C1‑related protein/eukaryotic translation initiation factor 2‑alpha kinase 2, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 314,001 | 19,000 bp x 2 | 100% | duplication | PF3D7_0107600–PF3D7_0108100 | PF3D7_0107600, PF3D7_0107700, PF3D7_0107800, PF3D7_0107900, PF3D7_0108000, PF3D7_0108000, PF3D7_0108000, PF3D7_0108000, PF3D7_0108100 | |
| NC_004325 | 314,492 | Δ6 bp | ? | 100% | intergenic (‑5235/‑121) | PF3D7_0107500 ← / → PF3D7_0107600 | Niemann‑Pick type C1‑related protein/eukaryotic translation initiation factor 2‑alpha kinase 2, putative |
| NC_004325 | 318,038 | A→C | ? | 100% | N1141H (AAT→CAT) | PF3D7_0107600 → | eukaryotic translation initiation factor 2‑alpha kinase 2, putative |
| NC_004325 | 319,524 | Δ6 bp | ? | 100% | intergenic (+119/‑639) | PF3D7_0107600 → / → PF3D7_0107700 | eukaryotic translation initiation factor 2‑alpha kinase 2, putative/dolichyl‑diphosphooligosaccharide‑‑protein glycosyltransferase subunit OST3/OST6, putative |
| NC_004325 | 319,847 | Δ2 bp | ? | 100% | intergenic (+442/‑320) | PF3D7_0107600 → / → PF3D7_0107700 | eukaryotic translation initiation factor 2‑alpha kinase 2, putative/dolichyl‑diphosphooligosaccharide‑‑protein glycosyltransferase subunit OST3/OST6, putative |
| NC_004325 | 320,630 | Δ6 bp | ? | 100% | coding (463‑468/1341 nt) | PF3D7_0107700 → | dolichyl‑diphosphooligosaccharide‑‑protein glycosyltransferase subunit OST3/OST6, putative |
| NC_004325 | 320,649 | (ATA)8→6 | 100% | coding (482‑487/1341 nt) | PF3D7_0107700 → | dolichyl‑diphosphooligosaccharide‑‑protein glycosyltransferase subunit OST3/OST6, putative | |
| NC_004325 | 321,662 | A→T | ? | 100% | intergenic (+154/‑709) | PF3D7_0107700 → / → PF3D7_0107800 | dolichyl‑diphosphooligosaccharide‑‑protein glycosyltransferase subunit OST3/OST6, putative/double‑strand break repair protein MRE11 |
| NC_004325 | 326,194 | +AAAAAAAAAATAAT | ? | 100% | intergenic (+122/+203) | PF3D7_0107800 → / ← PF3D7_0107900 | double‑strand break repair protein MRE11/conserved Plasmodium protein, unknown function |
| NC_004325 | 332,798 | +AAAT | 100% | intergenic (+90/‑4370) | PF3D7_0108100 → / → PF3D7_0108300 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 335,188 | (A)17→16 | 100% | intergenic (+2480/‑1980) | PF3D7_0108100 → / → PF3D7_0108300 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004325 | 337,501 | 65,100 bp x 3 | 100% | amplification | [PF3D7_0108300]–[PF3D7_0110500] | 80 genes [PF3D7_0108300], PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108400.1, PF3D7_0108500, PF3D7_0108600, PF3D7_0108600, PF3D7_0108600, PF3D7_0108600, PF3D7_0108600, PF3D7_0108600, PF3D7_0108700, PF3D7_0108700, PF3D7_0108700, PF3D7_0108700, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108800, PF3D7_0108900, PF3D7_0109000, PF3D7_0109100, PF3D7_0109100, PF3D7_0109200, PF3D7_0109300, PF3D7_0109300, PF3D7_0109400, PF3D7_0109400, PF3D7_0109500, PF3D7_0109500, PF3D7_0109600, PF3D7_0109600, PF3D7_0109600, PF3D7_0109700, PF3D7_0109700, PF3D7_0109800, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109850, PF3D7_0109950, PF3D7_0109950, PF3D7_0109950, PF3D7_0109950, PF3D7_0109950, PF3D7_0109950, PF3D7_0110000, PF3D7_0110100, PF3D7_0110200, PF3D7_0110300, PF3D7_0110400, PF3D7_0110400, [PF3D7_0110500] |
|
| NC_004325 | 362,256 | Δ2 bp | ? | 100% | noncoding (330‑331/600 nt) | PF3D7_0108900 ← | uncharacterized ncRNA |
| NC_004325 | 379,123 | C→T | ? | 100% | intergenic (‑524/+26) | PF3D7_0109600 ← / ← PF3D7_0109700 | cold‑shock protein, putative/rRNA biogenesis protein RRP36, putative |
| NC_004325 | 379,133 | C→T | ? | 100% | intergenic (‑534/+16) | PF3D7_0109600 ← / ← PF3D7_0109700 | cold‑shock protein, putative/rRNA biogenesis protein RRP36, putative |
| NC_004325 | 379,143 | C→T | ? | 100% | intergenic (‑544/+6) | PF3D7_0109600 ← / ← PF3D7_0109700 | cold‑shock protein, putative/rRNA biogenesis protein RRP36, putative |
| NC_004325 | 394,486 | +AT | 100% | intergenic (‑29/+183) | PF3D7_0110400 ← / ← PF3D7_0110400 | DNA‑directed RNA polymerase II subunit RPB9, putative/DNA‑directed RNA polymerase II subunit RPB9, putative | |
| NC_004325 | 403,378 | T→A | ? | 100% | intergenic (+23/‑136) | PF3D7_0110500 → / → PF3D7_0110500 | bromodomain protein, putative/bromodomain protein, putative |
| NC_004325 | 406,001 | 152,500 bp x 3 | 100% | amplification | [PF3D7_0110600]–PF3D7_0114500 | 84 genes [PF3D7_0110600], PF3D7_0110600, PF3D7_0110600, PF3D7_0110600, PF3D7_0110600, PF3D7_0110600, PF3D7_0110600, PF3D7_0110700, PF3D7_0110800, PF3D7_0110800, PF3D7_0110800, PF3D7_0110900, PF3D7_0111000, PF3D7_0111000, PF3D7_0111000, PF3D7_0111000, PF3D7_0111000, PF3D7_0111000, PF3D7_0111200, PF3D7_0111200, PF3D7_0111200, PF3D7_0111300, PF3D7_0111400, PF3D7_0111500, PF3D7_0111500, PF3D7_0111500, PF3D7_0111500, PF3D7_0111500, PF3D7_0111600, PF3D7_0111700, PF3D7_0111800, PF3D7_0111800, PF3D7_0111800, PF3D7_0111800, PF3D7_0111800, PF3D7_0111800, PF3D7_0111800, PF3D7_0111800, PF3D7_0111900, PF3D7_0111900, PF3D7_0111900, PF3D7_0112000, PF3D7_0112000, PF3D7_0112000, PF3D7_0112000, PF3D7_0112000, PF3D7_0112100, PF3D7_0112200, PF3D7_0112300, PF3D7_0112400, PF3D7_0112500, PF3D7_0112600, PF3D7_0112700, PF3D7_0112800, PF3D7_0112800, PF3D7_0112900, PF3D7_0112900, PF3D7_0113000, PF3D7_0113000, PF3D7_0113100, PF3D7_0113100, PF3D7_0113200, PF3D7_0113200, PF3D7_0113300, PF3D7_0113300, PF3D7_0113400, PF3D7_0113400, PF3D7_0113700, PF3D7_0113700, PF3D7_0113700, PF3D7_0113700, PF3D7_0113800, PF3D7_0113800, PF3D7_0113800, PF3D7_0113800, PF3D7_0113900, PF3D7_0113900, PF3D7_0114000, PF3D7_0114000, PF3D7_0114100, PF3D7_0114100, PF3D7_0114200, PF3D7_0114200, PF3D7_0114500 |
|
| NC_004325 | 410,152 | T→A | ? | 100% | intergenic (+19/‑168) | PF3D7_0110600 → / → PF3D7_0110600 | phosphatidylinositol‑4‑phosphate 5‑kinase/phosphatidylinositol‑4‑phosphate 5‑kinase |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 444,671 | +T | 100% | intergenic (‑733/‑1355) | PF3D7_0111700 ← / → PF3D7_0111800 | conserved protein, unknown function/eukaryotic translation initiation factor 4E, putative | |
| NC_004325 | 444,685 | (T)14→15 | 100% | intergenic (‑747/‑1341) | PF3D7_0111700 ← / → PF3D7_0111800 | conserved protein, unknown function/eukaryotic translation initiation factor 4E, putative | |
| NC_004325 | 477,168 | Δ2 bp | 100% | noncoding (740‑741/850 nt) | PF3D7_0112600 → | ribosomal RNA | |
| NC_004325 | 487,551 | +A | 100% | intergenic (+365/+341) | PF3D7_0112900 → / ← PF3D7_0113000 | Plasmodium exported protein, unknown function/glutamic acid‑rich protein GARP | |
| NC_004325 | 525,800 | +TATT | ? | 100% | intergenic (+3221/‑1307) | PF3D7_0113700 → / → PF3D7_0113800 | heat shock protein 40, type II/DBL containing protein, unknown function |
| NC_004325 | 527,002 | +AT | 100% | intergenic (+4423/‑105) | PF3D7_0113700 → / → PF3D7_0113800 | heat shock protein 40, type II/DBL containing protein, unknown function | |
| NC_004325 | 563,701 | 48,300 bp x 3 | 100% | amplification | PF3D7_0114700–[PF3D7_0115700] | 21 genes PF3D7_0114700, PF3D7_0114700, PF3D7_0114750, PF3D7_0114800, PF3D7_0114800, PF3D7_0115000, PF3D7_0115000, PF3D7_0115000, PF3D7_0115050, PF3D7_0115100, PF3D7_0115100, PF3D7_0115200, PF3D7_0115200, PF3D7_0115300, PF3D7_0115300, PF3D7_0115400, PF3D7_0115400, PF3D7_0115600, PF3D7_0115600, PF3D7_0115700, [PF3D7_0115700] |
|
| NC_004325 | 572,399 | +T | 100% | intergenic (‑2127/‑5305) | PF3D7_0114800 ← / → PF3D7_0115000 | Plasmodium exported protein (hyp7), unknown function/surface‑associated interspersed protein 1.3 (SURFIN 1.3) | |
| NC_004325 | 611,966 | G→T | 100% | P976P (CCC→CCA) | PF3D7_0115700 ← | erythrocyte membrane protein 1, PfEMP1 | |
| NC_004325 | 611,972 | C→G | 100% | V974I (GTG→ATC) | PF3D7_0115700 ← | erythrocyte membrane protein 1, PfEMP1 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 611,974 | C→T | 100% | V974I (GTG→ATC) | PF3D7_0115700 ← | erythrocyte membrane protein 1, PfEMP1 | |
| NC_004325 | 612,001 | Δ2,100 bp | ? | 100% | coding (794‑2893/5307 nt) | PF3D7_0115700 ← | erythrocyte membrane protein 1, PfEMP1 |
| NC_004325 | 614,101 | 26,800 bp x 23 | 100% | amplification | [PF3D7_0115700] | [PF3D7_0115700] | |
| NC_004325 | 617,772 | C→G | 100% | intergenic (‑2879/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 617,776 | T→C | 100% | intergenic (‑2883/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 617,857 | A→G | 100% | 100% | intergenic (‑2964/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| NC_004325 | 617,864 | 2 bp→TA | 100% | intergenic (‑2971/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 618,108 | T→A | 100% | intergenic (‑3215/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 618,144 | +T | 100% | intergenic (‑3251/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 618,173 | C→T | 100% | intergenic (‑3280/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004325 | 619,237 | T→G | 100% | intergenic (‑4344/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004325 | 619,244 | A→T | 100% | intergenic (‑4351/–) | PF3D7_0115700 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004326 | 1 | 59,100 bp x 8 | 100% | amplification | PF3D7_0500100–[PF3D7_0501100.1] | 24 genes PF3D7_0500100, PF3D7_0500100, PF3D7_0500200, PF3D7_0500300, PF3D7_0500300, PF3D7_0500400, PF3D7_0500400, PF3D7_0500500, PF3D7_0500500, PF3D7_0500600, PF3D7_0500600, PF3D7_0500600, PF3D7_0500700, PF3D7_0500800, PF3D7_0500800, PF3D7_0500900, PF3D7_0500900, PF3D7_0500900, PF3D7_0501000, PF3D7_0501000, PF3D7_0501100.1, PF3D7_0501100.1, [PF3D7_0501100.1], [PF3D7_0501100.1] |
|
| NC_004326 | 68,801 | 240,700 bp x 3 | 100% | amplification | PF3D7_0501300–[PF3D7_0507500] | 143 genes PF3D7_0501300, PF3D7_0501300, PF3D7_0501400, PF3D7_0501400, PF3D7_0501500, PF3D7_0501600, PF3D7_0501700, PF3D7_0501800, PF3D7_0501900, PF3D7_0501900, PF3D7_0502000, PF3D7_0502000, PF3D7_0502000, PF3D7_0502100, PF3D7_0502200, PF3D7_0502200, PF3D7_0502300, PF3D7_0502400, PF3D7_0502500, PF3D7_0502600, PF3D7_0502600, PF3D7_0502600, PF3D7_0502600, PF3D7_0502600, PF3D7_0502600, PF3D7_0502600, PF3D7_0502600, PF3D7_0502700, PF3D7_0502700, PF3D7_0502800, PF3D7_0502900, PF3D7_0502900, PF3D7_0502900, PF3D7_0503000, PF3D7_0503000, PF3D7_0503000, PF3D7_0503000, PF3D7_0503000, PF3D7_0503100, PF3D7_0503200, PF3D7_0503300, PF3D7_0503400, PF3D7_0503400, PF3D7_0503500, PF3D7_0503600, PF3D7_0503600, PF3D7_0503600, PF3D7_0503600, PF3D7_0503600, PF3D7_0503600, PF3D7_0503600, PF3D7_0503600, PF3D7_0503800, PF3D7_0503800, PF3D7_0503800, PF3D7_0503900, PF3D7_0503900, PF3D7_0504000, PF3D7_0504000, PF3D7_0504100, PF3D7_0504100, PF3D7_0504100, PF3D7_0504100, PF3D7_0504100, PF3D7_0504200, PF3D7_0504200, PF3D7_0504200, PF3D7_0504300, PF3D7_0504300, PF3D7_0504300, PF3D7_0504300, PF3D7_0504400, PF3D7_0504500, PF3D7_0504500, PF3D7_0504500, PF3D7_0504500, PF3D7_0504500, PF3D7_0504500, PF3D7_0504600, PF3D7_0504700, PF3D7_0504800, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0504900, PF3D7_0505000, PF3D7_0505000, PF3D7_0505100, PF3D7_0505100, PF3D7_0505200, PF3D7_0505300, PF3D7_0505400, PF3D7_0505500, PF3D7_0505500, PF3D7_0505600, PF3D7_0505700, PF3D7_0505800, PF3D7_0505800, PF3D7_0505900, PF3D7_0505900, PF3D7_0505900, PF3D7_0505900, PF3D7_0505900, PF3D7_0505900, PF3D7_0506000, PF3D7_0506000, PF3D7_0506000, PF3D7_0506100, PF3D7_0506100, PF3D7_0506100, PF3D7_0506200, PF3D7_0506300, PF3D7_0506400, PF3D7_0506400, PF3D7_0506400, PF3D7_0506400, PF3D7_0506400, PF3D7_0506500, PF3D7_0506500, PF3D7_0506600, PF3D7_0506600, PF3D7_0506600, PF3D7_0506600, PF3D7_0506600, PF3D7_0506600, PF3D7_0506700, PF3D7_0506800, PF3D7_0506800, PF3D7_0506800, PF3D7_0506900, PF3D7_0507000, PF3D7_0507000, PF3D7_0507000, PF3D7_0507100, PF3D7_0507200, PF3D7_0507300, PF3D7_0507400, [PF3D7_0507500] |
|
| NC_004326 | 78,118 | T→C | 100% | S1147P (TCA→CCA) | PF3D7_0501400 → | interspersed repeat antigen | |
| NC_004326 | 78,122 | C→T | 100% | T1148I (ACC→ATC) | PF3D7_0501400 → | interspersed repeat antigen | |
| NC_004326 | 118,900 | T→A | ? | 100% | intergenic (‑44/+133) | PF3D7_0502600 ← / ← PF3D7_0502600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004326 | 141,813 | Δ1 bp | ? | 100% | intergenic (+342/+1058) | PF3D7_0503400 → / ← PF3D7_0503500 | actin‑depolymerizing factor 1/protein kinase, putative |
| NC_004326 | 166,278 | Δ1 bp | ? | 100% | intergenic (‑140/+74) | PF3D7_0504100 ← / ← PF3D7_0504100 | AN1‑type zinc finger protein, putative/AN1‑type zinc finger protein, putative |
| NC_004326 | 205,784 | C→T | ? | 100% | intergenic (‑1052/‑666) | PF3D7_0504800 ← / → PF3D7_0504900 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004326 | 233,678 | G→A | ? | 100% | intergenic (+1286/‑137) | PF3D7_0505200 → / → PF3D7_0505300 | actin‑like protein, putative/UDP‑N‑acetylglucosamine transporter, putative |
| NC_004326 | 238,851 | Δ1 bp | ? | 100% | intergenic (‑486/+605) | PF3D7_0505400 ← / ← PF3D7_0505500 | conserved protein, unknown function/DNA mismatch repair protein MSH6, putative |
| NC_004326 | 254,727 | Δ2 bp | ? | 100% | intergenic (‑25/+73) | PF3D7_0505900 ← / ← PF3D7_0505900 | mediator of RNA polymerase II transcription subunit 11, putative/mediator of RNA polymerase II transcription subunit 11, putative |
| NC_004326 | 257,804 | C→A | ? | 100% | intergenic (‑12/+279) | PF3D7_0506100 ← / ← PF3D7_0506100 | 60S ribosomal subunit protein L24, putative/60S ribosomal subunit protein L24, putative |
| NC_004326 | 278,466 | A→T | ? | 100% | intergenic (+121/+308) | PF3D7_0506500 → / ← PF3D7_0506600 | conserved Plasmodium protein, unknown function/histone deacetylase, putative, pseudogene |
| NC_004326 | 278,471 | A→T | ? | 100% | intergenic (+126/+303) | PF3D7_0506500 → / ← PF3D7_0506600 | conserved Plasmodium protein, unknown function/histone deacetylase, putative, pseudogene |
| NC_004326 | 284,676 | C→T | ? | 100% | intergenic (+1331/‑15) | PF3D7_0506700 → / → PF3D7_0506800 | GTPase‑activating protein, putative/transcription factor 25, putative |
| NC_004326 | 313,201 | 85,800 bp x 3 | 100% | amplification | [PF3D7_0507600]–PF3D7_0509400 | 38 genes [PF3D7_0507600], PF3D7_0507700, PF3D7_0507800, PF3D7_0507900, PF3D7_0507900, PF3D7_0507900, PF3D7_0508000, PF3D7_0508100, PF3D7_0508200, PF3D7_0508200, PF3D7_0508200, PF3D7_0508200, PF3D7_0508300, PF3D7_0508400, PF3D7_0508400, PF3D7_0508400, PF3D7_0508400, PF3D7_0508500, PF3D7_0508600, PF3D7_0508700, PF3D7_0508800, PF3D7_0508900, PF3D7_0509000, PF3D7_0509000, PF3D7_0509000, PF3D7_0509000, PF3D7_0509000, PF3D7_0509100, PF3D7_0509200, PF3D7_0509200, PF3D7_0509200, PF3D7_0509200, PF3D7_0509200, PF3D7_0509300, PF3D7_0509300, PF3D7_0509400, PF3D7_0509400, PF3D7_0509400 |
|
| NC_004326 | 316,585 | C→A | ? | 100% | intergenic (+1428/+181) | PF3D7_0507600 → / ← PF3D7_0507700 | protein CAF40, putative/nuclear protein localization protein 4, putative |
| NC_004326 | 338,214 | +AT | 100% | intergenic (‑54/+124) | PF3D7_0508200 ← / ← PF3D7_0508200 | longevity‑assurance (LAG1) protein, putative/longevity‑assurance (LAG1) protein, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004326 | 366,002 | G→A | ? | 100% | intergenic (‑1560/‑1020) | PF3D7_0508800 ← / → PF3D7_0508900 | single‑stranded DNA‑binding protein/conserved Plasmodium protein, unknown function |
| NC_004326 | 401,301 | 29,200 bp x 3 | 100% | amplification | PF3D7_0509500–PF3D7_0510100 | 23 genes PF3D7_0509500, PF3D7_0509600, PF3D7_0509600, PF3D7_0509700, PF3D7_0509700, PF3D7_0509700, PF3D7_0509700, PF3D7_0509700, PF3D7_0509700, PF3D7_0509700, PF3D7_0509800, PF3D7_0509800, PF3D7_0509800, PF3D7_0509800, PF3D7_0509900, PF3D7_0510000, PF3D7_0510000, PF3D7_0510000, PF3D7_0510000, PF3D7_0510000, PF3D7_0510000, PF3D7_0510000, PF3D7_0510100 |
|
| NC_004326 | 402,865 | Δ5 bp | ? | 100% | intergenic (+94/‑473) | PF3D7_0509500 → / → PF3D7_0509600 | ERCC4 domain‑containing protein, putative/asparagine‑‑tRNA ligase |
| NC_004326 | 402,874 | A→T | ? | 100% | intergenic (+103/‑468) | PF3D7_0509500 → / → PF3D7_0509600 | ERCC4 domain‑containing protein, putative/asparagine‑‑tRNA ligase |
| NC_004326 | 437,401 | 17,600 bp x 3 | 100% | amplification | PF3D7_0510200–PF3D7_0510600 | PF3D7_0510200, PF3D7_0510300, PF3D7_0510300, PF3D7_0510300, PF3D7_0510400, PF3D7_0510500, PF3D7_0510600 | |
| NC_004326 | 459,301 | 23,300 bp x 3 | 100% | amplification | [PF3D7_0510700]–PF3D7_0511400 | 22 genes [PF3D7_0510700], PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510800, PF3D7_0510900, PF3D7_0511000, PF3D7_0511100, PF3D7_0511100, PF3D7_0511200, PF3D7_0511200, PF3D7_0511300, PF3D7_0511300, PF3D7_0511400 |
|
| NC_004326 | 466,521 | Δ2 bp | ? | 100% | intergenic (+582/+1063) | PF3D7_0510900 → / ← PF3D7_0511000 | small nucleolar RNA snoR04/translationally‑controlled tumor protein homolog |
| NC_004326 | 487,001 | 99,100 bp x 3 | 100% | amplification | [PF3D7_0511500]–PF3D7_0513800 | 65 genes [PF3D7_0511500], PF3D7_0511600, PF3D7_0511700, PF3D7_0511700, PF3D7_0511700, PF3D7_0511700, PF3D7_0511800, PF3D7_0511800, PF3D7_0511900, PF3D7_0512000, PF3D7_0512000, PF3D7_0512000, PF3D7_0512000, PF3D7_0512000, PF3D7_0512100, PF3D7_0512100, PF3D7_0512200, PF3D7_0512300, PF3D7_0512400, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512450, PF3D7_0512500, PF3D7_0512500, PF3D7_0512500, PF3D7_0512500, PF3D7_0512600, PF3D7_0512600, PF3D7_0512600, PF3D7_0512600, PF3D7_0512600, PF3D7_0512600, PF3D7_0512700, PF3D7_0512800, PF3D7_0512900, PF3D7_0513000, PF3D7_0513100, PF3D7_0513100, PF3D7_0513100, PF3D7_0513200, PF3D7_0513200, PF3D7_0513200, PF3D7_0513200, PF3D7_0513300, PF3D7_0513400, PF3D7_0513400, PF3D7_0513400, PF3D7_0513400, PF3D7_0513400, PF3D7_0513400, PF3D7_0513500, PF3D7_0513500, PF3D7_0513600, PF3D7_0513600, PF3D7_0513700, PF3D7_0513700, PF3D7_0513800 |
|
| NC_004326 | 572,087 | +AT | 100% | intergenic (‑49/+100) | PF3D7_0513400 ← / ← PF3D7_0513400 | GTP‑binding protein, putative/GTP‑binding protein, putative | |
| NC_004326 | 573,203 | A→T | ? | 100% | intergenic (‑542/‑385) | PF3D7_0513400 ← / → PF3D7_0513500 | GTP‑binding protein, putative/mitochondrial import inner membrane translocase subunit TIM16, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004326 | 573,206 | A→T | ? | 100% | intergenic (‑545/‑382) | PF3D7_0513400 ← / → PF3D7_0513500 | GTP‑binding protein, putative/mitochondrial import inner membrane translocase subunit TIM16, putative |
| NC_004326 | 585,109 | Δ2 bp | ? | 100% | intergenic (+985/+247) | PF3D7_0513700 → / ← PF3D7_0513800 | secreted ookinete protein, putative/ras‑related protein Rab‑1A |
| NC_004326 | 586,927 | G→T | ? | 100% | intergenic (‑947/‑825) | PF3D7_0513800 ← / → PF3D7_0513900 | ras‑related protein Rab‑1A/conserved protein, unknown function |
| NC_004326 | 586,932 | C→T | ? | 100% | intergenic (‑952/‑820) | PF3D7_0513800 ← / → PF3D7_0513900 | ras‑related protein Rab‑1A/conserved protein, unknown function |
| NC_004326 | 586,936 | C→T | ? | 100% | intergenic (‑956/‑816) | PF3D7_0513800 ← / → PF3D7_0513900 | ras‑related protein Rab‑1A/conserved protein, unknown function |
| NC_004326 | 587,901 | 357,100 bp x 3 | 100% | amplification | [PF3D7_0513900]–PF3D7_0522800 | 232 genes [PF3D7_0513900], PF3D7_0513900, PF3D7_0514000, PF3D7_0514000, PF3D7_0514000, PF3D7_0514000, PF3D7_0514000, PF3D7_0514100, PF3D7_0514200, PF3D7_0514300, PF3D7_0514400, PF3D7_0514500, PF3D7_0514500, PF3D7_0514500, PF3D7_0514500, PF3D7_0514500, PF3D7_0514500, PF3D7_0514600, PF3D7_0514600, PF3D7_0514600, PF3D7_0514600, PF3D7_0514600, PF3D7_0514700, PF3D7_0514800, PF3D7_0514900, PF3D7_0515000, PF3D7_0515100, PF3D7_0515100, PF3D7_0515100, PF3D7_0515200, PF3D7_0515200, PF3D7_0515300, PF3D7_0515400, PF3D7_0515400, PF3D7_0515400, PF3D7_0515400, PF3D7_0515400, PF3D7_0515400, PF3D7_0515500, PF3D7_0515500, PF3D7_0515500, PF3D7_0515500, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515600, PF3D7_0515700, PF3D7_0515800, PF3D7_0515900, PF3D7_0516000, PF3D7_0516000, PF3D7_0516100, PF3D7_0516100, PF3D7_0516200, PF3D7_0516200, PF3D7_0516200, PF3D7_0516300, PF3D7_0516400, PF3D7_0516500, PF3D7_0516500, PF3D7_0516500, PF3D7_0516500, PF3D7_0516500, PF3D7_0516500, PF3D7_0516600, PF3D7_0516700, PF3D7_0516700, PF3D7_0516700, PF3D7_0516800, PF3D7_0516900, PF3D7_0516900, PF3D7_0517000, PF3D7_0517000, PF3D7_0517100, PF3D7_0517200, PF3D7_0517300, PF3D7_0517300, PF3D7_0517400, PF3D7_0517400, PF3D7_0517400, PF3D7_0517500, PF3D7_0517600, PF3D7_0517700, PF3D7_0517800, PF3D7_0517800, PF3D7_0517900, PF3D7_0517900, PF3D7_0518000, PF3D7_0518000, PF3D7_0518000, PF3D7_0518000, PF3D7_0518000, PF3D7_0518000, PF3D7_0518100, PF3D7_0518100, PF3D7_0518200, PF3D7_0518300, PF3D7_0518300, PF3D7_0518300, PF3D7_0518300, PF3D7_0518400, PF3D7_0518500, PF3D7_0518600, PF3D7_0518700, PF3D7_0518700, PF3D7_0518700, PF3D7_0518700, PF3D7_0518700, PF3D7_0518800, PF3D7_0518800, PF3D7_0518800, PF3D7_0518800, PF3D7_0518800, PF3D7_0518800, PF3D7_0518800, PF3D7_0518900, PF3D7_0518900, PF3D7_0518900, PF3D7_0519000, PF3D7_0519100, PF3D7_0519200, PF3D7_0519200, PF3D7_0519200, PF3D7_0519200, PF3D7_0519200, PF3D7_0519300, PF3D7_0519400, PF3D7_0519400, PF3D7_0519500, PF3D7_0519500, PF3D7_0519600, PF3D7_0519700, PF3D7_0519700, PF3D7_0519700, PF3D7_0519800, PF3D7_0519800, PF3D7_0519900, PF3D7_0520000, PF3D7_0520000, PF3D7_0520000, PF3D7_0520100, PF3D7_0520100, PF3D7_0520100, PF3D7_0520100, PF3D7_0520100, PF3D7_0520100, PF3D7_0520200, PF3D7_0520300, PF3D7_0520300, PF3D7_0520300, PF3D7_0520400, PF3D7_0520500, PF3D7_0520600, PF3D7_0520600, PF3D7_0520600, PF3D7_0520600, PF3D7_0520600, PF3D7_0520700, PF3D7_0520800, PF3D7_0520900, PF3D7_0521000, PF3D7_0521000, PF3D7_0521100, PF3D7_0521100, PF3D7_0521100, PF3D7_0521100, PF3D7_0521100, PF3D7_0521100, PF3D7_0521100, PF3D7_0521100, PF3D7_0521200, PF3D7_0521300, PF3D7_0521300, PF3D7_0521300, PF3D7_0521400, PF3D7_0521500, PF3D7_0521500, PF3D7_0521600, PF3D7_0521700, PF3D7_0521800, PF3D7_0521800, PF3D7_0521800, PF3D7_0521800, PF3D7_0521800, PF3D7_0521800, PF3D7_0521900, PF3D7_0521900, PF3D7_0521900, PF3D7_0521900, PF3D7_0521900, PF3D7_0521900, PF3D7_0522000, PF3D7_0522000, PF3D7_0522000, PF3D7_0522000, PF3D7_0522100, PF3D7_0522200, PF3D7_0522200, PF3D7_0522200, PF3D7_0522200, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522300, PF3D7_0522400, PF3D7_0522400, PF3D7_0522400, PF3D7_0522400, PF3D7_0522500, PF3D7_0522500, PF3D7_0522500, PF3D7_0522600, PF3D7_0522700, PF3D7_0522700, PF3D7_0522700, PF3D7_0522700, PF3D7_0522700, PF3D7_0522800, PF3D7_0522800, PF3D7_0522800 |
|
| NC_004326 | 595,686 | T→A | ? | 100% | intergenic (‑23/‑1132) | PF3D7_0514100 ← / → PF3D7_0514200 | ATP‑dependent DNA helicase UvrD/conserved Plasmodium protein, unknown function |
| NC_004326 | 627,177 | Δ8 bp | ? | 100% | intergenic (‑696/‑114) | PF3D7_0515100 ← / → PF3D7_0515200 | rhomboid protease ROM9/conserved Plasmodium protein, unknown function |
| NC_004326 | 640,754 | G→T | ? | 100% | intergenic (+373/+383) | PF3D7_0515400 → / ← PF3D7_0515500 | conserved protein, unknown function/amino acid transporter, putative |
| NC_004326 | 686,462 | Δ2 bp | ? | 100% | intergenic (+603/+347) | PF3D7_0516500 → / ← PF3D7_0516600 | major facilitator superfamily domain‑containing protein, putative/sporozoite surface antigen MB2 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004326 | 695,183 | Δ1 bp | ? | 100% | intergenic (+5/‑128) | PF3D7_0516700 → / → PF3D7_0516700 | ubiquitin carboxyl‑terminal hydrolase 2, putative/ubiquitin carboxyl‑terminal hydrolase 2, putative |
| NC_004326 | 722,856 | G→A | ? | 100% | intergenic (‑215/+1825) | PF3D7_0517200 ← / ← PF3D7_0517300 | conserved Plasmodium protein, unknown function/serine/arginine‑rich splicing factor 1 |
| NC_004326 | 799,662 | Δ1 bp | ? | 100% | intergenic (‑887/+1788) | PF3D7_0519400 ← / ← PF3D7_0519500 | 40S ribosomal protein S24/CCR4 domain‑containing protein 1, putative |
| NC_004326 | 819,245 | Δ2 bp | ? | 100% | intergenic (+106/+1473) | PF3D7_0519700 → / ← PF3D7_0519800 | FoP domain‑containing protein, putative/EELM2 domain‑containing protein, putative |
| NC_004326 | 863,740 | Δ2 bp | ? | 100% | intergenic (‑74/+73) | PF3D7_0521100 ← / ← PF3D7_0521100 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004326 | 871,339 | C→T | ? | 100% | E1078K (GAA→AAA) | PF3D7_0521300 ← | zinc finger protein, putative |
| NC_004326 | 877,756 | +A | 100% | intergenic (‑195/‑312) | PF3D7_0521400 ← / → PF3D7_0521500 | conserved protein, unknown function/ribosomal large subunit pseudouridylate synthase, putative | |
| NC_004326 | 948,801 | 4,800 bp x 5 | 100% | amplification | [PF3D7_0522900] | [PF3D7_0522900] | |
| NC_004326 | 957,901 | 80,000 bp x 3 | 100% | amplification | [PF3D7_0523000]–[PF3D7_0525000] | 44 genes [PF3D7_0523000], PF3D7_0523100, PF3D7_0523100, PF3D7_0523200, PF3D7_0523200, PF3D7_0523300, PF3D7_0523300, PF3D7_0523300, PF3D7_0523400, PF3D7_0523400, PF3D7_0523400, PF3D7_0523400, PF3D7_0523500, PF3D7_0523500, PF3D7_0523500, PF3D7_0523500, PF3D7_0523500, PF3D7_0523500, PF3D7_0523600, PF3D7_0523600, PF3D7_0523600, PF3D7_0523600, PF3D7_0523600, PF3D7_0523700, PF3D7_0523700, PF3D7_0523800, PF3D7_0523900, PF3D7_0523900, PF3D7_0523900, PF3D7_0524000, PF3D7_0524100, PF3D7_0524100, PF3D7_0524200, PF3D7_0524200, PF3D7_0524200, PF3D7_0524300, PF3D7_0524400, PF3D7_0524500, PF3D7_0524600, PF3D7_0524700, PF3D7_0524800, PF3D7_0524800, PF3D7_0524900, [PF3D7_0525000] |
|
| NC_004326 | 992,740 | Δ1 bp | ? | 100% | intergenic (+681/+693) | PF3D7_0523800 → / ← PF3D7_0523900 | divalent metal transporter, putative/MerC domain‑containing protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004326 | 1,027,316 | Δ2 bp | ? | 100% | intergenic (‑3009/‑79) | PF3D7_0524800 ← / → PF3D7_0524900 | ubiquitin fusion degradation protein 1, putative/S‑adenosyl‑L‑methionine‑dependent tRNA 4‑demethylwyosine synthase, putative |
| NC_004326 | 1,041,701 | 301,900 bp x 3 | 100% | amplification | PF3D7_0525100–PF3D7_0533100 | 223 genes PF3D7_0525100, PF3D7_0525200, PF3D7_0525200, PF3D7_0525200, PF3D7_0525300, PF3D7_0525400, PF3D7_0525500, PF3D7_0525600, PF3D7_0525600, PF3D7_0525700, PF3D7_0525700, PF3D7_0525800, PF3D7_0525900, PF3D7_0525900, PF3D7_0525900, PF3D7_0525900, PF3D7_0525900, PF3D7_0525900, PF3D7_0525900, PF3D7_0525900, PF3D7_0526000, PF3D7_0526100, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526200.1, PF3D7_0526300, PF3D7_0526400, PF3D7_0526500, PF3D7_0526600, PF3D7_0526700, PF3D7_0526800, PF3D7_0526900, PF3D7_0526900, PF3D7_0526900, PF3D7_0526900, PF3D7_0527000, PF3D7_0527000, PF3D7_0527100, PF3D7_0527100, PF3D7_0527100, PF3D7_0527100, PF3D7_0527200, PF3D7_0527200, PF3D7_0527300, PF3D7_0527300, PF3D7_0527300, PF3D7_0527400, PF3D7_0527500, PF3D7_0527500, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527600, PF3D7_0527700, PF3D7_0527800, PF3D7_0527900, PF3D7_0528000, PF3D7_0528100, PF3D7_0528100, PF3D7_0528100, PF3D7_0528100, PF3D7_0528100, PF3D7_0528100, PF3D7_0528100, PF3D7_0528100, PF3D7_0528200, PF3D7_0528200, PF3D7_0528300, PF3D7_0528400, PF3D7_0528400, PF3D7_0528400, PF3D7_0528400, PF3D7_0528400, PF3D7_0528400, PF3D7_0528400, PF3D7_0528400, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528500, PF3D7_0528600, PF3D7_0528500, PF3D7_0528700, PF3D7_0528800, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0528900, PF3D7_0529000, PF3D7_0529100, PF3D7_0529100, PF3D7_0529200, PF3D7_0529200, PF3D7_0529200, PF3D7_0529200, PF3D7_0529200, PF3D7_0529200, PF3D7_0529300, PF3D7_0529300, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529400.1, PF3D7_0529500, PF3D7_0529500, PF3D7_0529500, PF3D7_0529500, PF3D7_0529500, PF3D7_0529500, PF3D7_0529600, PF3D7_0529700, PF3D7_0529700, PF3D7_0529800, PF3D7_0529800, PF3D7_0529900, PF3D7_0529900, PF3D7_0529900, PF3D7_0530000, PF3D7_0530100, PF3D7_0530100, PF3D7_0530200, PF3D7_0530300, PF3D7_0530300, PF3D7_0530300, PF3D7_0530300, PF3D7_0530400, PF3D7_0530500, PF3D7_0530500, PF3D7_0530500, PF3D7_0530500, PF3D7_0530500, PF3D7_0530600, PF3D7_0530600, PF3D7_0530700, PF3D7_0530700, PF3D7_0530750, PF3D7_0530750, PF3D7_0530750, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530800, PF3D7_0530900, PF3D7_0531000, PF3D7_0531100, PF3D7_0531200, PF3D7_0531300, PF3D7_0531300, PF3D7_0531400, PF3D7_0531500, PF3D7_0531600, PF3D7_0531700, PF3D7_0531800, PF3D7_0531900, PF3D7_0532000, PF3D7_0532100, PF3D7_0532200, PF3D7_0532200, PF3D7_0532300, PF3D7_0532300, PF3D7_0532400, PF3D7_0532400, PF3D7_0532500, PF3D7_0532500, PF3D7_0532600, PF3D7_0532600, PF3D7_0532700, PF3D7_0532700, PF3D7_0532800, PF3D7_0532800, PF3D7_0532800, PF3D7_0532900, PF3D7_0532900, PF3D7_0533000, PF3D7_0533000, PF3D7_0533100 |
|
| NC_004326 | 1,059,170 | A→T | ? | 100% | intergenic (+116/+748) | PF3D7_0525400 → / ← PF3D7_0525500 | 7‑helix‑1 protein/WD repeat‑containing protein, putative |
| NC_004326 | 1,059,174 | A→T | ? | 100% | intergenic (+120/+744) | PF3D7_0525400 → / ← PF3D7_0525500 | 7‑helix‑1 protein/WD repeat‑containing protein, putative |
| NC_004326 | 1,083,232 | G→A | ? | 100% | intergenic (‑87/+178) | PF3D7_0526200.1 ← / ← PF3D7_0526200.1 | ADP‑ribosylation factor GTPase‑activating protein, putative/ADP‑ribosylation factor GTPase‑activating protein, putative |
| NC_004326 | 1,087,509 | Δ2 bp | ? | 100% | intergenic (‑915/‑913) | PF3D7_0526300 ← / → PF3D7_0526400 | WD repeat‑containing protein 55, putative/conserved Plasmodium protein, unknown function |
| NC_004326 | 1,088,208 | G→A | ? | 100% | intergenic (‑1614/‑215) | PF3D7_0526300 ← / → PF3D7_0526400 | WD repeat‑containing protein 55, putative/conserved Plasmodium protein, unknown function |
| NC_004326 | 1,089,598 | C→T | ? | 100% | intergenic (+90/‑1332) | PF3D7_0526400 → / → PF3D7_0526500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004326 | 1,089,609 | G→T | ? | 100% | intergenic (+101/‑1321) | PF3D7_0526400 → / → PF3D7_0526500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004326 | 1,100,752 | (T)21→20 | 100% | intergenic (+5668/‑451) | PF3D7_0526500 → / → PF3D7_0526600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004326 | 1,123,541 | G→T | ? | 100% | intergenic (‑1731/‑69) | PF3D7_0526800 ← / → PF3D7_0526900 | conserved Plasmodium protein, unknown function/transmembrane emp24 domain‑containing protein, putative |
| NC_004326 | 1,123,548 | G→T | ? | 100% | intergenic (‑1738/‑62) | PF3D7_0526800 ← / → PF3D7_0526900 | conserved Plasmodium protein, unknown function/transmembrane emp24 domain‑containing protein, putative |
| NC_004326 | 1,140,108 | A→T | ? | 100% | intergenic (‑2238/‑519) | PF3D7_0527300 ← / → PF3D7_0527400 | methionine aminopeptidase 1a, putative/conserved Plasmodium protein, unknown function |
| NC_004326 | 1,190,880 | G→A | ? | 100% | intergenic (‑1934/+120) | PF3D7_0529000 ← / ← PF3D7_0529100 | conserved Plasmodium protein, unknown function/thioredoxin‑like protein, putative |
| NC_004326 | 1,193,026 | +AATGATGAA | 100% | coding (54/157 nt) | PF3D7_0529200 → | sugar transporter, putative | |
| NC_004326 | 1,220,763 | G→T | ? | 100% | intergenic (+1387/+14) | PF3D7_0529800 → / ← PF3D7_0529900 | conserved Plasmodium protein, unknown function/RING zinc finger protein, putative |
| NC_004326 | 1,270,082 | Δ1 bp | 100% | intergenic (+543/+306) | PF3D7_0531000 → / ← PF3D7_0531100 | SURF1 domain‑containing protein, putative/conserved Plasmodium protein, unknown function | |
| NC_004326 | 1,280,699 | C→T | ? | 100% | intergenic (‑100/‑590) | PF3D7_0531200 ← / → PF3D7_0531300 | ribosomal protein S16, mitochondrial, putative/conserved Plasmodium protein, unknown function |
| NC_004326 | 1,287,909 | Δ1 bp | 100% | intergenic (‑1803/‑650) | PF3D7_0531400 ← / → PF3D7_0531500 | conserved Plasmodium protein, unknown function/uncharacterized ncRNA | |
| NC_004326 | 1,343,477 | C→T | 100% | intergenic (+513/–) | PF3D7_0533100 → / – | erythrocyte membrane protein 1 (PfEMP1), pseudogene/– | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 1 | Δ15,800 bp | 100% | PF3D7_0600200–[PF3D7_0600300] | PF3D7_0600200, PF3D7_0600200, [PF3D7_0600300] | ||
| NC_004327 | 629 | +A | 100% | Δ | intergenic (–/‑2874) | – / → PF3D7_0600200 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004327 | 647 | T→A | 100% | Δ | intergenic (–/‑2856) | – / → PF3D7_0600200 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004327 | 15,801 | 344,500 bp x 3 | 100% | amplification | [PF3D7_0600300]–PF3D7_0608700 | 229 genes [PF3D7_0600300], PF3D7_0600300, PF3D7_0600400, PF3D7_0600400, PF3D7_0600500, PF3D7_0600500, PF3D7_0600600, PF3D7_0600600, PF3D7_0600700, PF3D7_0600700, PF3D7_0601000, PF3D7_0601000, PF3D7_0601100, PF3D7_0601100, PF3D7_0601200, PF3D7_0601200, PF3D7_0601300, PF3D7_0601500, PF3D7_0601500, PF3D7_0601600, PF3D7_0601800, PF3D7_0601900, PF3D7_0601900, PF3D7_0602000, PF3D7_0602100, PF3D7_0602100, PF3D7_0602200, PF3D7_0602200, PF3D7_0602200, PF3D7_0602300, PF3D7_0602400, PF3D7_0602400, PF3D7_0602400, PF3D7_0602400, PF3D7_0602500, PF3D7_0602600, PF3D7_0602600, PF3D7_0602600, PF3D7_0602600, PF3D7_0602600, PF3D7_0602700, PF3D7_0602800, PF3D7_0602900, PF3D7_0602900, PF3D7_0603000, PF3D7_0603100, PF3D7_0603200, PF3D7_0603300, PF3D7_0603400, PF3D7_0603500, PF3D7_0603600, PF3D7_0603600, PF3D7_0603600, PF3D7_0603700, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603800, PF3D7_0603900, PF3D7_0604000, PF3D7_0604100, PF3D7_0604200, PF3D7_0604200, PF3D7_0604200, PF3D7_0604300, PF3D7_0604400, PF3D7_0604400, PF3D7_0604400, PF3D7_0604400, PF3D7_0604500, PF3D7_0604500, PF3D7_0604500, PF3D7_0604500, PF3D7_0604600, PF3D7_0604600, PF3D7_0604700, PF3D7_0604700, PF3D7_0604700, PF3D7_0604700, PF3D7_0604700, PF3D7_0604700, PF3D7_0604800, PF3D7_0604900, PF3D7_0604900, PF3D7_0604900, PF3D7_0605000, PF3D7_0605100, PF3D7_0605200, PF3D7_0605200, PF3D7_0605200, PF3D7_0605200, PF3D7_0605200, PF3D7_0605200, PF3D7_0605300, PF3D7_0605300, PF3D7_0605300, PF3D7_0605300, PF3D7_0605400, PF3D7_0605500, PF3D7_0605500, PF3D7_0605600, PF3D7_0605600, PF3D7_0605600, PF3D7_0605600, PF3D7_0605600, PF3D7_0605600, PF3D7_0605600, PF3D7_0605700, PF3D7_0605800, PF3D7_0605900, PF3D7_0605900, PF3D7_0605900, PF3D7_0605900, PF3D7_0605900, PF3D7_0606000, PF3D7_0606100, PF3D7_0606100, PF3D7_0606100, PF3D7_0606100, PF3D7_0606200, PF3D7_0606200, PF3D7_0606200, PF3D7_0606200, PF3D7_0606300, PF3D7_0606400, PF3D7_0606400, PF3D7_0606400, PF3D7_0606400, PF3D7_0606400, PF3D7_0606500, PF3D7_0606500, PF3D7_0606500, PF3D7_0606500, PF3D7_0606500, PF3D7_0606600, PF3D7_0606600, PF3D7_0606700, PF3D7_0606700, PF3D7_0606700, PF3D7_0606700, PF3D7_0606800, PF3D7_0606900, PF3D7_0607000, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607100, PF3D7_0607200, PF3D7_0607200, PF3D7_0607300, PF3D7_0607300, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607400, PF3D7_0607500, PF3D7_0607600, PF3D7_0607600, PF3D7_0607600, PF3D7_0607600, PF3D7_0607600, PF3D7_0607700, PF3D7_0607800, PF3D7_0607800, PF3D7_0607900, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608000, PF3D7_0608100, PF3D7_0608200, PF3D7_0608200, PF3D7_0608200, PF3D7_0608200, PF3D7_0608300, PF3D7_0608310, PF3D7_0608400, PF3D7_0608400, PF3D7_0608500, PF3D7_0608500, PF3D7_0608600, PF3D7_0608600, PF3D7_0608700, PF3D7_0608700 |
|
| NC_004327 | 24,519 | A→C | 100% | intergenic (‑1798/‑2038) | PF3D7_0600400 ← / → PF3D7_0600500 | erythrocyte membrane protein 1, PfEMP1/rifin | |
| NC_004327 | 24,552 | C→A | 100% | 100% | intergenic (‑1831/‑2005) | PF3D7_0600400 ← / → PF3D7_0600500 | erythrocyte membrane protein 1, PfEMP1/rifin |
| NC_004327 | 24,720 | T→G | 100% | 100% | intergenic (‑1999/‑1837) | PF3D7_0600400 ← / → PF3D7_0600500 | erythrocyte membrane protein 1, PfEMP1/rifin |
| NC_004327 | 24,735 | T→C | 100% | 100% | intergenic (‑2014/‑1822) | PF3D7_0600400 ← / → PF3D7_0600500 | erythrocyte membrane protein 1, PfEMP1/rifin |
| NC_004327 | 24,749 | G→C | ? | 100% | intergenic (‑2028/‑1808) | PF3D7_0600400 ← / → PF3D7_0600500 | erythrocyte membrane protein 1, PfEMP1/rifin |
| NC_004327 | 57,425 | C→A | 100% | intergenic (‑7703/+8363) | PF3D7_0601300 ← / ← PF3D7_0601500 | exported protein family 1/Plasmodium exported protein (PHISTb), unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 98,989 | +TA | 100% | intergenic (+38/‑792) | PF3D7_0602200 → / → PF3D7_0602300 | MYND‑type zinc finger protein, putative/liver merozoite formation protein, putative | |
| NC_004327 | 101,472 | Δ1 bp | ? | 100% | intergenic (‑8/+130) | PF3D7_0602400 ← / ← PF3D7_0602400 | elongation factor G/elongation factor G |
| NC_004327 | 160,041 | Δ2 bp | 100% | intergenic (‑40/+123) | PF3D7_0603800 ← / ← PF3D7_0603800 | centrosomal protein CEP76, putative/centrosomal protein CEP76, putative | |
| NC_004327 | 180,027 | A→T | ? | 100% | intergenic (‑2787/‑909) | PF3D7_0604100 ← / → PF3D7_0604200 | AP2 domain transcription factor/mitochondrial ribosomal protein L41, putative |
| NC_004327 | 180,030 | C→T | ? | 100% | intergenic (‑2790/‑906) | PF3D7_0604100 ← / → PF3D7_0604200 | AP2 domain transcription factor/mitochondrial ribosomal protein L41, putative |
| NC_004327 | 237,514 | +T | 100% | intergenic (+263/+297) | PF3D7_0605700 → / ← PF3D7_0605800 | conserved Plasmodium protein, unknown function/DNA repair protein RAD50, putative | |
| NC_004327 | 277,614 | +TTTTCTTTTTCTTC | 100% | coding (149/7205 nt) | PF3D7_0606600 ← | conserved Plasmodium protein, unknown function | |
| NC_004327 | 282,007 | C→T | ? | 100% | intergenic (‑4245/‑42) | PF3D7_0606600 ← / → PF3D7_0606700 | conserved Plasmodium protein, unknown function/coatomer alpha subunit, putative |
| NC_004327 | 282,019 | A→T | ? | 100% | intergenic (‑4257/‑30) | PF3D7_0606600 ← / → PF3D7_0606700 | conserved Plasmodium protein, unknown function/coatomer alpha subunit, putative |
| NC_004327 | 289,892 | Δ2 bp | ? | 100% | intergenic (‑616/+533) | PF3D7_0606800 ← / ← PF3D7_0606900 | VFT protein/glutaredoxin‑like protein |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 298,840 | +TA | 100% | intergenic (+60/‑41) | PF3D7_0607100 → / → PF3D7_0607100 | MYND‑type zinc finger protein, putative/MYND‑type zinc finger protein, putative | |
| NC_004327 | 298,955 | Δ4 bp | ? | 100% | intergenic (+23/‑71) | PF3D7_0607100 → / → PF3D7_0607100 | MYND‑type zinc finger protein, putative/MYND‑type zinc finger protein, putative |
| NC_004327 | 303,799 | Δ1 bp | 100% | intergenic (‑509/‑839) | PF3D7_0607200 ← / → PF3D7_0607300 | RING zinc finger protein, putative/uroporphyrinogen III decarboxylase | |
| NC_004327 | 303,824 | (T)26→25 | 100% | intergenic (‑534/‑814) | PF3D7_0607200 ← / → PF3D7_0607300 | RING zinc finger protein, putative/uroporphyrinogen III decarboxylase | |
| NC_004327 | 320,600 | Δ2 bp | ? | 100% | intergenic (‑3718/‑139) | PF3D7_0607600 ← / → PF3D7_0607700 | spindle assembly abnormal protein 6, putative/conserved Plasmodium protein, unknown function |
| NC_004327 | 329,800 | C→A | ? | 100% | intergenic (‑11/+154) | PF3D7_0607800 ← / ← PF3D7_0607800 | GTP‑binding protein, putative/GTP‑binding protein, putative |
| NC_004327 | 332,057 | A→T | ? | 100% | intergenic (‑332/‑286) | PF3D7_0607800 ← / → PF3D7_0607900 | GTP‑binding protein, putative/conserved Plasmodium protein, unknown function |
| NC_004327 | 332,064 | A→T | ? | 100% | intergenic (‑339/‑279) | PF3D7_0607800 ← / → PF3D7_0607900 | GTP‑binding protein, putative/conserved Plasmodium protein, unknown function |
| NC_004327 | 336,878 | Δ1 bp | ? | 100% | intergenic (‑11/+126) | PF3D7_0608000 ← / ← PF3D7_0608000 | diphthine methyltransferase, putative/diphthine methyltransferase, putative |
| NC_004327 | 347,980 | C→T | ? | 100% | intergenic (+473/‑30) | PF3D7_0608300 → / → PF3D7_0608310 | heptatricopeptide repeat‑containing protein, putative/sorting assembly machinery 50 kDa subunit, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 347,990 | C→T | ? | 100% | intergenic (+483/‑20) | PF3D7_0608300 → / → PF3D7_0608310 | heptatricopeptide repeat‑containing protein, putative/sorting assembly machinery 50 kDa subunit, putative |
| NC_004327 | 362,401 | 116,100 bp x 3 | 100% | amplification | PF3D7_0608800–PF3D7_0611400 | 66 genes PF3D7_0608800, PF3D7_0608900, PF3D7_0608900, PF3D7_0609000, PF3D7_0609100, PF3D7_0609100, PF3D7_0609100, PF3D7_0609100, PF3D7_0609100, PF3D7_0609100, PF3D7_0609100, PF3D7_0609200, PF3D7_0609200, PF3D7_0609300, PF3D7_0609300, PF3D7_0609400, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609500, PF3D7_0609600, PF3D7_0609600, PF3D7_0609700, PF3D7_0609700, PF3D7_0609700, PF3D7_0609800, PF3D7_0609800, PF3D7_0609800, PF3D7_0609800, PF3D7_0609900, PF3D7_0610000, PF3D7_0610000, PF3D7_0610000, PF3D7_0610100, PF3D7_0610100, PF3D7_0610100, PF3D7_0610200, PF3D7_0610300, PF3D7_0610400, PF3D7_0610500, PF3D7_0610500, PF3D7_0610600, PF3D7_0610600, PF3D7_0610600, PF3D7_0610700, PF3D7_0610700, PF3D7_0610700, PF3D7_0610800, PF3D7_0610900, PF3D7_0611000, PF3D7_0611000, PF3D7_0611000, PF3D7_0611100, PF3D7_0611200, PF3D7_0611200, PF3D7_0611200, PF3D7_0611300, PF3D7_0611300, PF3D7_0611300, PF3D7_0611400 |
|
| NC_004327 | 450,612 | T→A | ? | 100% | intergenic (+34/‑345) | PF3D7_0610600 → / → PF3D7_0610600 | calcium‑dependent protein kinase 2/calcium‑dependent protein kinase 2 |
| NC_004327 | 478,501 | Δ3,100 bp | 100% | intergenic (‑4351/+1225) | PF3D7_0611400 ← / ← PF3D7_0611500 | SWIB/MDM2 domain‑containing protein/conserved protein, unknown function | |
| NC_004327 | 481,601 | 19,800 bp x 3 | 100% | amplification | PF3D7_0611500–PF3D7_0611800 | PF3D7_0611500, PF3D7_0611600, PF3D7_0611700, PF3D7_0611700, PF3D7_0611700, PF3D7_0611800, PF3D7_0611800, PF3D7_0611800, PF3D7_0611800, PF3D7_0611800 | |
| NC_004327 | 506,501 | 54,200 bp x 3 | 100% | amplification | [PF3D7_0611900]–[PF3D7_0613700] | 54 genes [PF3D7_0611900], PF3D7_0611900, PF3D7_0611900, PF3D7_0612000, PF3D7_0612000, PF3D7_0612000, PF3D7_0612100, PF3D7_0612200, PF3D7_0612200, PF3D7_0612200, PF3D7_0612200, PF3D7_0612200, PF3D7_0612200, PF3D7_0612200, PF3D7_0612200, PF3D7_0612300, PF3D7_0612400, PF3D7_0612500, PF3D7_0612600, PF3D7_0612700, PF3D7_0612800, PF3D7_0612900, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613000.1, PF3D7_0613100, PF3D7_0613100, PF3D7_0613100, PF3D7_0613100, PF3D7_0613200, PF3D7_0613200, PF3D7_0613300, PF3D7_0613300, PF3D7_0613300, PF3D7_0613300, PF3D7_0613400, PF3D7_0613400, PF3D7_0613500, PF3D7_0613600, PF3D7_0613600, [PF3D7_0613700] |
|
| NC_004327 | 514,281 | T→A | ? | 100% | intergenic (‑39/+116) | PF3D7_0612200 ← / ← PF3D7_0612200 | leucine‑rich repeat protein/leucine‑rich repeat protein |
| NC_004327 | 530,679 | A→T | ? | 100% | intergenic (‑1504/‑447) | PF3D7_0612800 ← / → PF3D7_0612900 | 6‑cysteine protein/nucleolar GTP‑binding protein 1, putative |
| NC_004327 | 530,682 | A→T | ? | 100% | intergenic (‑1507/‑444) | PF3D7_0612800 ← / → PF3D7_0612900 | 6‑cysteine protein/nucleolar GTP‑binding protein 1, putative |
| NC_004327 | 553,132 | Δ2 bp | ? | 100% | intergenic (‑761/‑1324) | PF3D7_0613500 ← / → PF3D7_0613600 | AP‑3 complex subunit beta, putative/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 560,462 | G→T | ? | 100% | N333K (AAC→AAA) | PF3D7_0613700 ← | syntaxin‑binding protein, putative |
| NC_004327 | 565,932 | G→T | ? | 100% | intergenic (‑4472/‑207) | PF3D7_0613700 ← / → PF3D7_0613800 | syntaxin‑binding protein, putative/AP2 domain transcription factor, putative |
| NC_004327 | 566,301 | 364,700 bp x 3 | 100% | amplification | [PF3D7_0613800]–[PF3D7_0622900] | 236 genes [PF3D7_0613800], PF3D7_0613800, PF3D7_0613800, PF3D7_0613900, PF3D7_0614000, PF3D7_0614100, PF3D7_0614200, PF3D7_0614300, PF3D7_0614300, PF3D7_0614300, PF3D7_0614300, PF3D7_0614400, PF3D7_0614500, PF3D7_0614500, PF3D7_0614500, PF3D7_0614600, PF3D7_0614700, PF3D7_0614700, PF3D7_0614800, PF3D7_0614900, PF3D7_0614900, PF3D7_0614900, PF3D7_0615000, PF3D7_0615100, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615200, PF3D7_0615300, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615400, PF3D7_0615500, PF3D7_0615600, PF3D7_0615600, PF3D7_0615600, PF3D7_0615600, PF3D7_0615600, PF3D7_0615600, PF3D7_0615600, PF3D7_0615600, PF3D7_0615700, PF3D7_0615700, PF3D7_0615700, PF3D7_0615700, PF3D7_0615700, PF3D7_0615700, PF3D7_0615700, PF3D7_0615800, PF3D7_0615800, PF3D7_0615800, PF3D7_0615900, PF3D7_0616000, PF3D7_0616000, PF3D7_0616000, PF3D7_0616100, PF3D7_0616100, PF3D7_0616200, PF3D7_0616200, PF3D7_0616200, PF3D7_0616200, PF3D7_0616200, PF3D7_0616300, PF3D7_0616400, PF3D7_0616500, PF3D7_0616600, PF3D7_0616700, PF3D7_0616800, PF3D7_0616900, PF3D7_0617000, PF3D7_0617100, PF3D7_0617100, PF3D7_0617100, PF3D7_0617100, PF3D7_0617100, PF3D7_0617100, PF3D7_0617100, PF3D7_0617200, PF3D7_0617200, PF3D7_0617200, PF3D7_0617200, PF3D7_0617300, PF3D7_0617300, PF3D7_0617300, PF3D7_0617400, PF3D7_0617400, PF3D7_0617600, PF3D7_0617600, PF3D7_0617700, PF3D7_0617700, PF3D7_0617800, PF3D7_0617900, PF3D7_0618000, PF3D7_0618100, PF3D7_0618200, PF3D7_0618200, PF3D7_0618300, PF3D7_0618300, PF3D7_0618400, PF3D7_0618400, PF3D7_0618400, PF3D7_0618400, PF3D7_0618400, PF3D7_0618500, PF3D7_0618600, PF3D7_0618600, PF3D7_0618600, PF3D7_0618600, PF3D7_0618600, PF3D7_0618600, PF3D7_0618600, PF3D7_0618600, PF3D7_0618700, PF3D7_0618700, PF3D7_0618800, PF3D7_0618800, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0618900.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619000.1, PF3D7_0619100, PF3D7_0619100, PF3D7_0619100, PF3D7_0619200, PF3D7_0619200, PF3D7_0619300, PF3D7_0619300, PF3D7_0619300, PF3D7_0619400, PF3D7_0619400, PF3D7_0619500, PF3D7_0619600, PF3D7_0619700, PF3D7_0619700, PF3D7_0619700, PF3D7_0619800, PF3D7_0619800, PF3D7_0619900, PF3D7_0620000, PF3D7_0620100, PF3D7_0620100, PF3D7_0620200, PF3D7_0620300, PF3D7_0620400, PF3D7_0620500, PF3D7_0620600, PF3D7_0620700, PF3D7_0620800, PF3D7_0620900, PF3D7_0621000, PF3D7_0621100, PF3D7_0621200, PF3D7_0621300, PF3D7_0621350, PF3D7_0621350, PF3D7_0621350, PF3D7_0621400, PF3D7_0621500, PF3D7_0621600, PF3D7_0621700, PF3D7_0621700, PF3D7_0621700, PF3D7_0621700, PF3D7_0621800, PF3D7_0621800, PF3D7_0621800, PF3D7_0621900, PF3D7_0622000, PF3D7_0622000, PF3D7_0622000, PF3D7_0622100, PF3D7_0622200, PF3D7_0622300, PF3D7_0622300, PF3D7_0622300, PF3D7_0622300, PF3D7_0622400, PF3D7_0622500, PF3D7_0622600, PF3D7_0622600, PF3D7_0622600, PF3D7_0622600, PF3D7_0622700, PF3D7_0622700, PF3D7_0622800, [PF3D7_0622900] |
|
| NC_004327 | 569,569 | +TCAAGATGG | 100% | coding (3431/8857 nt) | PF3D7_0613800 → | AP2 domain transcription factor, putative | |
| NC_004327 | 586,914 | Δ1 bp | ? | 100% | intergenic (‑1018/+105) | PF3D7_0613900 ← / ← PF3D7_0614000 | myosin E, putative/thiamine‑phosphate synthase, putative |
| NC_004327 | 627,476 | G→A | ? | 100% | intergenic (+16/‑83) | PF3D7_0615200 → / → PF3D7_0615200 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004327 | 634,972 | Δ24 bp | ? | 100% | coding (1349‑1372/4119 nt) | PF3D7_0615400 ← | ribonuclease, putative |
| NC_004327 | 662,313 | G→A | ? | 100% | intergenic (‑524/+122) | PF3D7_0615800 ← / ← PF3D7_0615900 | conserved oligomeric Golgi complex subunit 4, putative/protein phosphatase, putative |
| NC_004327 | 668,540 | Δ2 bp | ? | 100% | intergenic (‑685/‑1319) | PF3D7_0615900 ← / → PF3D7_0616000 | protein phosphatase, putative/pyridoxal kinase |
| NC_004327 | 727,227 | C→A | 100% | 100% | D1422Y (GAT→TAT) | PF3D7_0617400 ← | erythrocyte membrane protein 1, PfEMP1 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 774,501 | A→T | ? | 100% | intergenic (‑1995/‑28) | PF3D7_0618400 ← / → PF3D7_0618500 | LMBR1 domain‑containing protein, putative/malate dehydrogenase |
| NC_004327 | 774,505 | G→T | ? | 100% | intergenic (‑1999/‑24) | PF3D7_0618400 ← / → PF3D7_0618500 | LMBR1 domain‑containing protein, putative/malate dehydrogenase |
| NC_004327 | 840,093 | Δ2 bp | ? | 100% | intergenic (‑1060/‑429) | PF3D7_0619800 ← / → PF3D7_0619900 | conserved Plasmodium membrane protein, unknown function/splicing factor 3A subunit 2, putative |
| NC_004327 | 843,821 | C→T | ? | 100% | intergenic (‑458/‑1839) | PF3D7_0620000 ← / → PF3D7_0620100 | secreted ookinete protein 25, putative/ATP synthase‑associated protein, putative |
| NC_004327 | 843,825 | G→T | ? | 100% | intergenic (‑462/‑1835) | PF3D7_0620000 ← / → PF3D7_0620100 | secreted ookinete protein 25, putative/ATP synthase‑associated protein, putative |
| NC_004327 | 851,169 | C→T | ? | 100% | intergenic (‑305/+209) | PF3D7_0620300 ← / ← PF3D7_0620400 | conserved Plasmodium protein, unknown function/merozoite surface protein 10 |
| NC_004327 | 878,336 | G→T | ? | 100% | intergenic (‑1038/‑454) | PF3D7_0621350 ← / → PF3D7_0621400 | protein SYS1, putative/inner membrane complex protein 1j, putative |
| NC_004327 | 915,452 | Δ1 bp | ? | 100% | intergenic (+23/+548) | PF3D7_0622600 → / ← PF3D7_0622700 | cytochrome b‑c1 complex subunit 9, putative/conserved Plasmodium membrane protein, unknown function |
| NC_004327 | 936,901 | 33,500 bp x 3 | 100% | amplification | PF3D7_0623000–[PF3D7_0623800] | 32 genes PF3D7_0623000, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623100, PF3D7_0623200, PF3D7_0623300, PF3D7_0623300, PF3D7_0623300, PF3D7_0623300, PF3D7_0623400, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623500, PF3D7_0623600, PF3D7_0623600, PF3D7_0623700, [PF3D7_0623800] |
|
| NC_004327 | 955,514 | A→T | ? | 100% | intergenic (‑666/‑1251) | PF3D7_0623500 ← / → PF3D7_0623600 | superoxide dismutase [Fe]/transcription or splicing factor‑like protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 955,522 | A→T | ? | 100% | intergenic (‑674/‑1243) | PF3D7_0623500 ← / → PF3D7_0623600 | superoxide dismutase [Fe]/transcription or splicing factor‑like protein, putative |
| NC_004327 | 962,602 | T→A | ? | 100% | intergenic (‑57/+1139) | PF3D7_0623700 ← / ← PF3D7_0623800 | ATP‑dependent RNA helicase SUV3, putative/tyrosine kinase‑like protein, putative |
| NC_004327 | 977,101 | 19,400 bp x 3 | 100% | amplification | PF3D7_0623900–PF3D7_0624500 | 22 genes PF3D7_0623900, PF3D7_0624000, PF3D7_0624100, PF3D7_0624100, PF3D7_0624200, PF3D7_0624200, PF3D7_0624200, PF3D7_0624200, PF3D7_0624200, PF3D7_0624200, PF3D7_0624200, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624300, PF3D7_0624400, PF3D7_0624500 |
|
| NC_004327 | 989,998 | A→T | 100% | 100% | intergenic (+362/+377) | PF3D7_0624300 → / ← PF3D7_0624400 | CPW‑WPC family protein/conserved protein, unknown function |
| NC_004327 | 992,245 | T→A | ? | 100% | intergenic (‑47/‑2039) | PF3D7_0624400 ← / → PF3D7_0624500 | conserved protein, unknown function/anaphase‑promoting complex subunit 11, putative |
| NC_004327 | 999,501 | 349,100 bp x 3 | 100% | amplification | PF3D7_0624600–PF3D7_0632300 | 205 genes PF3D7_0624600, PF3D7_0624700, PF3D7_0624700, PF3D7_0624700, PF3D7_0624700, PF3D7_0624700, PF3D7_0624700, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624800, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0624900, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625000.1, PF3D7_0625100, PF3D7_0625200, PF3D7_0625300, PF3D7_0625400, PF3D7_0625500, PF3D7_0625600, PF3D7_0625700, PF3D7_0625800, PF3D7_0625900, PF3D7_0625900, PF3D7_0626000, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626100, PF3D7_0626200, PF3D7_0626300, PF3D7_0626300, PF3D7_0626300, PF3D7_0626400, PF3D7_0626500, PF3D7_0626600, PF3D7_0626700, PF3D7_0626800, PF3D7_0626800, PF3D7_0626840, PF3D7_0626800, PF3D7_0626900, PF3D7_0627000, PF3D7_0627100, PF3D7_0627200, PF3D7_0627200, PF3D7_0627200, PF3D7_0627200, PF3D7_0627200, PF3D7_0627200, PF3D7_0627200, PF3D7_0627200, PF3D7_0627300, PF3D7_0627400, PF3D7_0627500, PF3D7_0627500, PF3D7_0627500, PF3D7_0627600, PF3D7_0627700, PF3D7_0627800, PF3D7_0627900, PF3D7_0627900, PF3D7_0627900, PF3D7_0628000, PF3D7_0628100, PF3D7_0628200, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628300.1, PF3D7_0628400, PF3D7_0628400, PF3D7_0628400, PF3D7_0628400, PF3D7_0628400, PF3D7_0628400, PF3D7_0628400, PF3D7_0628400, PF3D7_0628500, PF3D7_0628600, PF3D7_0628600, PF3D7_0628600, PF3D7_0628600, PF3D7_0628600, PF3D7_0628700, PF3D7_0628800, PF3D7_0628900, PF3D7_0628900, PF3D7_0628900, PF3D7_0629000, PF3D7_0629100, PF3D7_0629200, PF3D7_0629300, PF3D7_0629400, PF3D7_0629500, PF3D7_0629500, PF3D7_0629600, PF3D7_0629600, PF3D7_0629700, PF3D7_0629700, PF3D7_0629700, PF3D7_0629700, PF3D7_0629700, PF3D7_0629700, PF3D7_0629800, PF3D7_0629800, PF3D7_0629900, PF3D7_0629900, PF3D7_0629900, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630000, PF3D7_0630100, PF3D7_0630200, PF3D7_0630200, PF3D7_0630200, PF3D7_0630200, PF3D7_0630200, PF3D7_0630300, PF3D7_0630300, PF3D7_0630300, PF3D7_0630300, PF3D7_0630400, PF3D7_0630500, PF3D7_0630600, PF3D7_0630600, PF3D7_0630600, PF3D7_0630700, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630800, PF3D7_0630900, PF3D7_0630900, PF3D7_0631000, PF3D7_0631100, PF3D7_0631100, PF3D7_0631300, PF3D7_0631400, PF3D7_0631400, PF3D7_0631500, PF3D7_0631500, PF3D7_0631600, PF3D7_0631600, PF3D7_0631800, PF3D7_0631800, PF3D7_0631900, PF3D7_0631900, PF3D7_0632000, PF3D7_0632000, PF3D7_0632100, PF3D7_0632100, PF3D7_0632200, PF3D7_0632200, PF3D7_0632300, PF3D7_0632300 |
|
| NC_004327 | 1,002,935 | G→A | 100% | 100% | E1138K (GAA→AAA) | PF3D7_0624600 → | SNF2 helicase, putative |
| NC_004327 | 1,038,834 | Δ1 bp | ? | 100% | intergenic (+2463/‑821) | PF3D7_0625500 → / → PF3D7_0625600 | conserved Plasmodium membrane protein, unknown function/poly(A) polymerase PAP, putative |
| NC_004327 | 1,113,732 | Δ2 bp | ? | 100% | intergenic (+2092/+811) | PF3D7_0627700 → / ← PF3D7_0627800 | transportin/acetyl‑CoA synthetase, putative |
| NC_004327 | 1,172,824 | Δ2 bp | ? | 100% | intergenic (‑15/+117) | PF3D7_0628300.1 ← / ← PF3D7_0628300.1 | choline/ethanolaminephosphotransferase, putative/choline/ethanolaminephosphotransferase, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 1,174,845 | +T | 100% | intergenic (‑1149/‑1420) | PF3D7_0628300.1 ← / → PF3D7_0628400 | choline/ethanolaminephosphotransferase, putative/protease, putative | |
| NC_004327 | 1,184,430 | G→A | ? | 100% | E179K (GAA→AAA) | PF3D7_0628700 → | conserved Plasmodium protein, unknown function |
| NC_004327 | 1,215,453 | C→G | 100% | 100% | V185L (GTA→CTA) | PF3D7_0629500 ← | amino acid transporter AAT1 |
| NC_004327 | 1,279,752 | G→T | ? | 100% | intergenic (+1927/‑68) | PF3D7_0630500 → / → PF3D7_0630600 | ribosome biogenesis protein YTM1, putative/conserved protein, unknown function |
| NC_004327 | 1,354,301 | Δ21,500 bp | ? | 100% | [PF3D7_0632500]–[PF3D7_0632800] | [PF3D7_0632500], PF3D7_0632500, PF3D7_0632700, PF3D7_0632700, [PF3D7_0632800] | |
| NC_004327 | 1,384,885 | (T)6→5 | 100% | intergenic (‑2258/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,384,886 | G→A | 100% | intergenic (‑2259/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,384,893 | T→A | 100% | intergenic (‑2266/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,386,701 | T→C | 100% | intergenic (‑4074/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,386,722 | G→A | 100% | intergenic (‑4095/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004327 | 1,386,740 | T→C | 100% | intergenic (‑4113/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,386,743 | A→T | 100% | intergenic (‑4116/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,388,601 | 29,700 bp x 4 | 100% | amplification | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,394,241 | T→G | 100% | intergenic (‑11614/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,397,787 | 2 bp→AC | 100% | intergenic (‑15160/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,397,791 | A→T | 100% | intergenic (‑15164/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,397,797 | G→C | 100% | intergenic (‑15170/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,397,799 | A→G | 100% | intergenic (‑15172/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004327 | 1,397,803 | G→T | 100% | intergenic (‑15176/–) | PF3D7_0632800 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004328 | 1,086 | Δ1 bp | 100% | intergenic (–/‑19221) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 1,088 | Δ1 bp | 100% | intergenic (–/‑19219) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 1,303 | C→A | 100% | intergenic (–/‑19004) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 13,320 | A→C | 100% | intergenic (–/‑6987) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 13,324 | C→T | 100% | intergenic (–/‑6983) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 13,326 | G→C | 100% | intergenic (–/‑6981) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 13,520 | A→T | ? | 100% | intergenic (–/‑6787) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 13,521 | T→A | ? | 100% | intergenic (–/‑6786) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 13,586 | C→G | 100% | intergenic (–/‑6721) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 13,590 | T→A | 100% | intergenic (–/‑6717) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 14,186 | G→A | 100% | 100% | intergenic (–/‑6121) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 14,193 | A→T | 100% | intergenic (–/‑6114) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 14,193 | 2 bp→TA | 100% | intergenic (–/‑6113) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 14,194 | T→A | 100% | intergenic (–/‑6113) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 14,203 | G→C | 100% | 100% | intergenic (–/‑6104) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 14,207 | G→C | ? | 100% | intergenic (–/‑6100) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 14,213 | C→T | ? | 100% | intergenic (–/‑6094) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 16,446 | +A | 100% | intergenic (–/‑3861) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 17,416 | A→G | 100% | intergenic (–/‑2891) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 17,416 | 2 bp→GA | 100% | intergenic (–/‑2890) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 17,417 | T→A | 100% | intergenic (–/‑2890) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 17,424 | G→T | 100% | 100% | intergenic (–/‑2883) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 17,463 | G→A | 100% | intergenic (–/‑2844) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_004328 | 17,659 | G→T | ? | 100% | intergenic (–/‑2648) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 17,661 | C→G | ? | 100% | intergenic (–/‑2646) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 17,665 | A→G | ? | 100% | intergenic (–/‑2642) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 17,675 | C→A | ? | 100% | intergenic (–/‑2632) | – / → PF3D7_0700100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 20,201 | 7,900 bp x 7 | 100% | amplification | PF3D7_0700100–PF3D7_0700100 | PF3D7_0700100, PF3D7_0700100 | |
| NC_004328 | 28,201 | Δ2,200 bp | 100% | PF3D7_0700200–[PF3D7_0700200] | PF3D7_0700200, [PF3D7_0700200] | ||
| NC_004328 | 42,601 | 34,300 bp x 3 | 100% | amplification | PF3D7_0700800–PF3D7_0701800 | PF3D7_0700800, PF3D7_0700800, PF3D7_0701100, PF3D7_0701100, PF3D7_0701500, PF3D7_0701500, PF3D7_0701600, PF3D7_0701600, PF3D7_0701700, PF3D7_0701800 | |
| NC_004328 | 79,901 | 356,500 bp x 3 | 100% | amplification | [PF3D7_0701900]–PF3D7_0709700 | 161 genes [PF3D7_0701900], PF3D7_0701900, PF3D7_0702000, PF3D7_0702000, PF3D7_0702200, PF3D7_0702300, PF3D7_0702300, PF3D7_0702400, PF3D7_0702400, PF3D7_0702500, PF3D7_0702500, PF3D7_0702600, PF3D7_0702700, PF3D7_0702800, PF3D7_0702900, PF3D7_0702900, PF3D7_0702900, PF3D7_0702900, PF3D7_0703000, PF3D7_0703100, PF3D7_0703200, PF3D7_0703300, PF3D7_0703400, PF3D7_0703500, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703600, PF3D7_0703700, PF3D7_0703800, PF3D7_0703900, PF3D7_0704000, PF3D7_0704100, PF3D7_0704200, PF3D7_0704300, PF3D7_0704400, PF3D7_0704500, PF3D7_0704600, PF3D7_0704600, PF3D7_0704600, PF3D7_0704600, PF3D7_0704600, PF3D7_0704600, PF3D7_0704600, PF3D7_0704600, PF3D7_0704700, PF3D7_0704800, PF3D7_0704900, PF3D7_0705000, PF3D7_0705000, PF3D7_0705100, PF3D7_0705200, PF3D7_0705300, PF3D7_0705400, PF3D7_0705500, PF3D7_0705500, PF3D7_0705600, PF3D7_0705700, PF3D7_0705700, PF3D7_0705700, PF3D7_0705800, PF3D7_0705800, PF3D7_0705800, PF3D7_0705800, PF3D7_0705800, PF3D7_0705800, PF3D7_0705800, PF3D7_0705800, PF3D7_0705900, PF3D7_0705900, PF3D7_0705900, PF3D7_0705900, PF3D7_0706000, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706100, PF3D7_0706200, PF3D7_0706200, PF3D7_0706200, PF3D7_0706300, PF3D7_0706300, PF3D7_0706400, PF3D7_0706500, PF3D7_0706600, PF3D7_0706700, PF3D7_0706800, PF3D7_0706900, PF3D7_0707000, PF3D7_0707100, PF3D7_0707200, PF3D7_0707300, PF3D7_0707300, PF3D7_0707300, PF3D7_0707300, PF3D7_0707300, PF3D7_0707400, PF3D7_0707500, PF3D7_0707600, PF3D7_0707700, PF3D7_0707800, PF3D7_0707800, PF3D7_0707800, PF3D7_0707900, PF3D7_0708000, PF3D7_0708000, PF3D7_0708000, PF3D7_0708100, PF3D7_0708200, PF3D7_0708200, PF3D7_0708300, PF3D7_0708300, PF3D7_0708300, PF3D7_0708300, PF3D7_0708300, PF3D7_0708400, PF3D7_0707420, PF3D7_0708400, PF3D7_0708500, PF3D7_0708600, PF3D7_0708600, PF3D7_0708700, PF3D7_0708800, PF3D7_0708900, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709000, PF3D7_0709050, PF3D7_0709100, PF3D7_0709200, PF3D7_0709300, PF3D7_0709400, PF3D7_0709400, PF3D7_0709500, PF3D7_0709500, PF3D7_0709600, PF3D7_0709600, PF3D7_0709600, PF3D7_0709600, PF3D7_0709700 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 83,581 | T→A | ? | 100% | intergenic (‑638/‑1216) | PF3D7_0701900 ← / → PF3D7_0702000 | Plasmodium exported protein, unknown function/Plasmodium exported protein (hyp12), unknown function |
| NC_004328 | 87,261 | Δ2 bp | ? | 100% | intergenic (+1587/+4605) | PF3D7_0702000 → / ← PF3D7_0702200 | Plasmodium exported protein (hyp12), unknown function/lysophospholipase, putative |
| NC_004328 | 109,007 | Δ1 bp | ? | 100% | intergenic (‑3018/‑908) | PF3D7_0702500 ← / → PF3D7_0702600 | Plasmodium exported protein, unknown function/chitinase precursor fragment, truncated |
| NC_004328 | 113,522 | Δ6 bp | ? | 100% | intergenic (‑88/+137) | PF3D7_0702900 ← / ← PF3D7_0702900 | centrin, putative/centrin, putative |
| NC_004328 | 115,123 | C→T | ? | 100% | intergenic (‑1175/‑116) | PF3D7_0702900 ← / → PF3D7_0703000 | centrin, putative/conserved Plasmodium protein, unknown function |
| NC_004328 | 136,886 | +AAC | 100% | coding (1281/6900 nt) | PF3D7_0703500 → | erythrocyte membrane‑associated antigen | |
| NC_004328 | 148,530 | +AT | ? | 100% | intergenic (‑1136/‑1274) | PF3D7_0703700 ← / → PF3D7_0703800 | conserved protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004328 | 228,892 | +AT | 100% | intergenic (‑85/+100) | PF3D7_0704600 ← / ← PF3D7_0704600 | E3 ubiquitin‑protein ligase/E3 ubiquitin‑protein ligase | |
| NC_004328 | 228,919 | (TA)13→14 | 100% | intergenic (‑112/+73) | PF3D7_0704600 ← / ← PF3D7_0704600 | E3 ubiquitin‑protein ligase/E3 ubiquitin‑protein ligase | |
| NC_004328 | 309,015 | Δ1 bp | ? | 100% | intergenic (‑1882/+887) | PF3D7_0706400 ← / ← PF3D7_0706500 | 60S ribosomal protein L37/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 357,015 | A→T | ? | 100% | intergenic (+2295/‑685) | PF3D7_0707600 → / → PF3D7_0707700 | mediator of RNA polymerase II transcription subunit 10, putative/E3 ubiquitin‑protein ligase, putative |
| NC_004328 | 375,293 | A→T | ? | 100% | intergenic (‑244/+43) | PF3D7_0708200 ← / ← PF3D7_0708200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004328 | 375,302 | A→T | ? | 100% | intergenic (‑253/+34) | PF3D7_0708200 ← / ← PF3D7_0708200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004328 | 375,309 | A→T | ? | 100% | intergenic (‑260/+27) | PF3D7_0708200 ← / ← PF3D7_0708200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004328 | 438,501 | 105,900 bp x 3 | 100% | amplification | PF3D7_0709900–PF3D7_0712300 | 41 genes PF3D7_0709900, PF3D7_0709900, PF3D7_0709900, PF3D7_0710000, PF3D7_0710000, PF3D7_0710000, PF3D7_0710000, PF3D7_0710000, PF3D7_0710000, PF3D7_0710000, PF3D7_0710100, PF3D7_0710200, PF3D7_0710300, PF3D7_0710300, PF3D7_0710300, PF3D7_0710300, PF3D7_0710400, PF3D7_0710500, PF3D7_0710500, PF3D7_0710500, PF3D7_0710500, PF3D7_0710500, PF3D7_0710600, PF3D7_0710600, PF3D7_0710700, PF3D7_0710800, PF3D7_0710900, PF3D7_0711000, PF3D7_0711100, PF3D7_0711200, PF3D7_0711300, PF3D7_0711400, PF3D7_0711500, PF3D7_0711600, PF3D7_0711700, PF3D7_0711700, PF3D7_0711800, PF3D7_0712000, PF3D7_0712000, PF3D7_0712100, PF3D7_0712300 |
|
| NC_004328 | 442,663 | C→T | ? | 100% | intergenic (‑149/+8) | PF3D7_0709900 ← / ← PF3D7_0709900 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004328 | 477,192 | Δ2 bp | ? | 100% | intergenic (‑87/+114) | PF3D7_0710500 ← / ← PF3D7_0710500 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004328 | 526,192 | Δ2 bp | ? | 100% | intergenic (+2911/+1145) | PF3D7_0711800 → / ← PF3D7_0712000 | Plasmodium RNA of unknown function RUF6/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 545,101 | 5,600 bp x 9 | 100% | amplification | PF3D7_0712300 | PF3D7_0712300 | |
| NC_004328 | 554,101 | 28,800 bp x 5 | 100% | amplification | PF3D7_0712400–PF3D7_0712800 | PF3D7_0712400, PF3D7_0712600, PF3D7_0712600, PF3D7_0712700, PF3D7_0712800 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 560,275 | Δ2 bp | ? | 100% | intergenic (‑1197/+6450) | PF3D7_0712400 ← / ← PF3D7_0712600 | erythrocyte membrane protein 1, PfEMP1/erythrocyte membrane protein 1, PfEMP1 |
| NC_004328 | 583,601 | 8,000 bp x 8 | 100% | amplification | PF3D7_0712800–PF3D7_0712900 | PF3D7_0712800, PF3D7_0712900 | |
| NC_004328 | 592,401 | 216,700 bp x 3 | 100% | amplification | [PF3D7_0712900]–PF3D7_0718100 | 145 genes [PF3D7_0712900], PF3D7_0713000, PF3D7_0713000, PF3D7_0713100, PF3D7_0713100, PF3D7_0713200, PF3D7_0713400, PF3D7_0713400, PF3D7_0713500, PF3D7_0713600, PF3D7_0713600, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713700, PF3D7_0713800, PF3D7_0713800, PF3D7_0713900, PF3D7_0714000, PF3D7_0714100, PF3D7_0714200, PF3D7_0714300, PF3D7_0714300, PF3D7_0714300, PF3D7_0714300, PF3D7_0714300, PF3D7_0714400, PF3D7_0714400, PF3D7_0714400, PF3D7_0714500, PF3D7_0714600, PF3D7_0714700, PF3D7_0714800, PF3D7_0714900, PF3D7_0715000, PF3D7_0715100, PF3D7_0715100, PF3D7_0715200, PF3D7_0715300, PF3D7_0715300, PF3D7_0715300, PF3D7_0715300, PF3D7_0715400, PF3D7_0715400, PF3D7_0715400, PF3D7_0715500, PF3D7_0715500, PF3D7_0715500, PF3D7_0715600, PF3D7_0715700, PF3D7_0715800, PF3D7_0715900, PF3D7_0716000, PF3D7_0716100, PF3D7_0716200, PF3D7_0716300, PF3D7_0716300, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716400, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716500, PF3D7_0716600, PF3D7_0716600, PF3D7_0716700, PF3D7_0716800, PF3D7_0716800, PF3D7_0716800, PF3D7_0716900, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717000, PF3D7_0717100, PF3D7_0717100, PF3D7_0717200, PF3D7_0717200, PF3D7_0717300, PF3D7_0717300, PF3D7_0717300, PF3D7_0717300, PF3D7_0717400, PF3D7_0717500, PF3D7_0717500, PF3D7_0717600, PF3D7_0717600, PF3D7_0717600, PF3D7_0717600, PF3D7_0717600, PF3D7_0717600, PF3D7_0717600, PF3D7_0717600, PF3D7_0717700, PF3D7_0717800, PF3D7_0717900, PF3D7_0717900, PF3D7_0717900, PF3D7_0717900, PF3D7_0717900, PF3D7_0717900, PF3D7_0717900, PF3D7_0717900, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718000, PF3D7_0718100, PF3D7_0718100 |
|
| NC_004328 | 617,887 | +TA | 100% | intergenic (+638/‑46) | PF3D7_0713500 → / → PF3D7_0713600 | conserved Plasmodium protein, unknown function/mitochondrial ribosomal protein S5 precursor, putative | |
| NC_004328 | 643,010 | Δ2 bp | 100% | intergenic (‑5234/+90) | PF3D7_0713900 ← / ← PF3D7_0714000 | conserved Plasmodium protein, unknown function/histone H2B variant | |
| NC_004328 | 697,908 | C→T | ? | 100% | intergenic (‑1004/‑1331) | PF3D7_0715800 ← / → PF3D7_0715900 | drug/metabolite transporter DMT1, putative/cation diffusion facilitator family protein, putative |
| NC_004328 | 701,913 | Δ1 bp | ? | 100% | intergenic (+1004/‑1294) | PF3D7_0715900 → / → PF3D7_0716000 | cation diffusion facilitator family protein, putative/RNA‑binding protein, putative |
| NC_004328 | 809,101 | Δ3,200 bp | 100% | intergenic (‑4362/+1) | PF3D7_0718100 ← / ← PF3D7_0718300 | exported serine/threonine protein kinase/cysteine repeat modular protein 2 | |
| NC_004328 | 812,301 | 119,700 bp x 3 | 100% | amplification | [PF3D7_0718300]–PF3D7_0721600 | 107 genes [PF3D7_0718300], PF3D7_0718300, PF3D7_0718300, PF3D7_0718300, PF3D7_0718300, PF3D7_0718300, PF3D7_0718300, PF3D7_0718400, PF3D7_0718400, PF3D7_0718500, PF3D7_0718500, PF3D7_0718500, PF3D7_0718500, PF3D7_0718500, PF3D7_0718500, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718600, PF3D7_0718700, PF3D7_0718800, PF3D7_0718800, PF3D7_0718800, PF3D7_0718800, PF3D7_0718800, PF3D7_0718900, PF3D7_0718900, PF3D7_0719000, PF3D7_0719100, PF3D7_0719100, PF3D7_0719100, PF3D7_0719100, PF3D7_0719200, PF3D7_0719200, PF3D7_0719200, PF3D7_0719200, PF3D7_0719200, PF3D7_0719200, PF3D7_0719200, PF3D7_0719300, PF3D7_0719400, PF3D7_0719500, PF3D7_0719500, PF3D7_0719500, PF3D7_0719600, PF3D7_0719600, PF3D7_0719700, PF3D7_0719700, PF3D7_0719700, PF3D7_0719800, PF3D7_0719900, PF3D7_0720000, PF3D7_0720000, PF3D7_0720100, PF3D7_0720200, PF3D7_0720200, PF3D7_0720300, PF3D7_0720300, PF3D7_0720400, PF3D7_0720400, PF3D7_0720500, PF3D7_0720500, PF3D7_0720500, PF3D7_0720500, PF3D7_0720500, PF3D7_0720500, PF3D7_0720600, PF3D7_0720600, PF3D7_0720600, PF3D7_0720600, PF3D7_0720600, PF3D7_0720600, PF3D7_0720600, PF3D7_0720700, PF3D7_0720700, PF3D7_0720700, PF3D7_0720700, PF3D7_0720800, PF3D7_0720800, PF3D7_0720800, PF3D7_0720800, PF3D7_0720800, PF3D7_0720800, PF3D7_0720800, PF3D7_0720900, PF3D7_0720900, PF3D7_0720900, PF3D7_0720900, PF3D7_0721000, PF3D7_0721000, PF3D7_0721100, PF3D7_0721200, PF3D7_0721300, PF3D7_0721400, PF3D7_0721400, PF3D7_0721400, PF3D7_0721400, PF3D7_0721400, PF3D7_0721400, PF3D7_0721500, PF3D7_0721600 |
|
| NC_004328 | 839,236 | +AT | 100% | intergenic (‑61/+89) | PF3D7_0719100 ← / ← PF3D7_0719100 | ATP synthase F0 subunit a‑like protein, putative/ATP synthase F0 subunit a‑like protein, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 935,501 | 188,900 bp x 3 | 100% | amplification | [PF3D7_0721700]–[PF3D7_0726400] | 110 genes [PF3D7_0721700], PF3D7_0721800, PF3D7_0721800, PF3D7_0721800, PF3D7_0721900, PF3D7_0721900, PF3D7_0721900, PF3D7_0722000, PF3D7_0722100, PF3D7_0722200, PF3D7_0722300, PF3D7_0722400, PF3D7_0722400, PF3D7_0722400, PF3D7_0722500, PF3D7_0722500, PF3D7_0722600, PF3D7_0722700, PF3D7_0722700, PF3D7_0722800, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0722900, PF3D7_0723000, PF3D7_0723100, PF3D7_0723200, PF3D7_0723200, PF3D7_0723200, PF3D7_0723200, PF3D7_0723300, PF3D7_0723400, PF3D7_0723500, PF3D7_0723600, PF3D7_0723600, PF3D7_0723600, PF3D7_0723700, PF3D7_0723800, PF3D7_0723800, PF3D7_0723800, PF3D7_0723800, PF3D7_0723900, PF3D7_0723900, PF3D7_0723900, PF3D7_0723900, PF3D7_0724000, PF3D7_0724100, PF3D7_0724100, PF3D7_0724200, PF3D7_0724300, PF3D7_0724300, PF3D7_0724400, PF3D7_0724400, PF3D7_0724500, PF3D7_0724500, PF3D7_0724500, PF3D7_0724500, PF3D7_0724600, PF3D7_0724600, PF3D7_0724600, PF3D7_0724600, PF3D7_0724600, PF3D7_0724700, PF3D7_0724700, PF3D7_0724700, PF3D7_0724700, PF3D7_0724700, PF3D7_0724800, PF3D7_0724800, PF3D7_0724800, PF3D7_0724800, PF3D7_0724900, PF3D7_0725000, PF3D7_0725100, PF3D7_0725100, PF3D7_0725200, PF3D7_0725200, PF3D7_0725200, PF3D7_0725200, PF3D7_0725300, PF3D7_0725300, PF3D7_0725400, PF3D7_0725400, PF3D7_0725400, PF3D7_0725400, PF3D7_0725600, PF3D7_0725700, PF3D7_0725800, PF3D7_0725900, PF3D7_0726000, PF3D7_0726050, PF3D7_0726100, PF3D7_0726100, PF3D7_0726200, PF3D7_0726200, PF3D7_0726200, PF3D7_0726300, PF3D7_0726300, PF3D7_0726400, PF3D7_0726400, PF3D7_0726400, PF3D7_0726400, [PF3D7_0726400] |
|
| NC_004328 | 953,517 | C→T | ? | 100% | intergenic (‑403/‑1267) | PF3D7_0722300 ← / → PF3D7_0722400 | ubiquitin carboxyl‑terminal hydrolase, putative/Obg‑like ATPase 1, putative |
| NC_004328 | 968,990 | +TATTAT | 100% | coding (746/900 nt) | PF3D7_0723000 ← | tRNAHis guanylyltransferase, putative | |
| NC_004328 | 987,773 | Δ2 bp | ? | 100% | intergenic (+408/‑371) | PF3D7_0723600 → / → PF3D7_0723700 | proteasome assembly chaperone 4, putative/metallo‑hydrolase/oxidoreductase, putative |
| NC_004328 | 1,038,100 | G→T | 100% | 100% | H2589N (CAT→AAT) | PF3D7_0724700 ← | conserved Plasmodium protein, unknown function |
| NC_004328 | 1,040,803 | Δ1 bp | 100% | coding (2095/7085 nt) | PF3D7_0724700 ← | conserved Plasmodium protein, unknown function | |
| NC_004328 | 1,052,402 | Δ2 bp | ? | 100% | intergenic (‑3040/‑62) | PF3D7_0724800 ← / → PF3D7_0724900 | kelch domain‑containing protein, putative/kinesin‑19, putative |
| NC_004328 | 1,071,296 | Δ6 bp | ? | 100% | intergenic (+49/‑58) | PF3D7_0725200 → / → PF3D7_0725200 | mago nashi protein homologue, putative/mago nashi protein homologue, putative |
| NC_004328 | 1,127,201 | 162,000 bp x 3 | 100% | amplification | PF3D7_0726500–PF3D7_0730200 | 81 genes PF3D7_0726500, PF3D7_0726600, PF3D7_0726600, PF3D7_0726700, PF3D7_0726800, PF3D7_0726800, PF3D7_0726800, PF3D7_0726900, PF3D7_0727000, PF3D7_0727100, PF3D7_0727200, PF3D7_0727300, PF3D7_0727400, PF3D7_0727400, PF3D7_0727400, PF3D7_0727500, PF3D7_0727600, PF3D7_0727600, PF3D7_0727600, PF3D7_0727700, PF3D7_0727800, PF3D7_0727900, PF3D7_0728000, PF3D7_0728000, PF3D7_0728100, PF3D7_0728200, PF3D7_0728200, PF3D7_0728300, PF3D7_0728400.1, PF3D7_0728400.1, PF3D7_0728500, PF3D7_0728500, PF3D7_0728500, PF3D7_0728500, PF3D7_0728500, PF3D7_0728600, PF3D7_0728600, PF3D7_0728600, PF3D7_0728600, PF3D7_0728600, PF3D7_0728700, PF3D7_0728700, PF3D7_0728700, PF3D7_0728700, PF3D7_0728800, PF3D7_0728800, PF3D7_0728900, PF3D7_0728900, PF3D7_0728900, PF3D7_0728900, PF3D7_0728900, PF3D7_0728900, PF3D7_0728900, PF3D7_0728900, PF3D7_0729000, PF3D7_0729000, PF3D7_0729000, PF3D7_0729000, PF3D7_0729000, PF3D7_0729100, PF3D7_0729200, PF3D7_0729200, PF3D7_0729300, PF3D7_0729400, PF3D7_0729500, PF3D7_0729600.1, PF3D7_0729600.1, PF3D7_0729600.1, PF3D7_0729600.1, PF3D7_0729600.1, PF3D7_0729700, PF3D7_0729700, PF3D7_0729800, PF3D7_0729900, PF3D7_0729900, PF3D7_0730000, PF3D7_0730000, PF3D7_0730100, PF3D7_0730200, PF3D7_0730200, PF3D7_0730200 |
|
| NC_004328 | 1,134,743 | +TAT | 100% | coding (1835/9258 nt) | PF3D7_0726500 ← | ubiquitin carboxyl‑terminal hydrolase, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 1,134,767 | (TAT)8→9 | 100% | coding (1811/9258 nt) | PF3D7_0726500 ← | ubiquitin carboxyl‑terminal hydrolase, putative | |
| NC_004328 | 1,167,345 | Δ2 bp | ? | 100% | intergenic (‑767/‑95) | PF3D7_0727500 ← / → PF3D7_0727600 | mTERF domain‑containing protein, putative/conserved Plasmodium protein, unknown function |
| NC_004328 | 1,190,607 | +TTTA | ? | 100% | intergenic (+435/+572) | PF3D7_0727900 → / ← PF3D7_0728000 | conserved Plasmodium protein, unknown function/eukaryotic translation initiation factor 2 subunit alpha |
| NC_004328 | 1,195,043 | Δ1 bp | ? | 100% | coding (15259/16686 nt) | PF3D7_0728100 ← | anaphase‑promoting complex subunit 1, putative |
| NC_004328 | 1,215,796 | T→A | ? | 100% | intergenic (+33/+292) | PF3D7_0728400.1 → / ← PF3D7_0728500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004328 | 1,228,848 | A→T | ? | 100% | intergenic (‑134/‑1741) | PF3D7_0728700 ← / → PF3D7_0728800 | alpha/beta hydrolase, putative/conserved Plasmodium protein, unknown function |
| NC_004328 | 1,232,183 | Δ2 bp | ? | 100% | intergenic (+3/+88) | PF3D7_0728800 → / ← PF3D7_0728900 | conserved Plasmodium protein, unknown function/RNA‑binding protein, putative |
| NC_004328 | 1,251,907 | T→A | ? | 100% | intergenic (‑404/‑940) | PF3D7_0729300 ← / → PF3D7_0729400 | 60S ribosomal export protein NMD3, putative/ribosome biogenesis protein BRX1, putative |
| NC_004328 | 1,291,258 | +T | 100% | intergenic (‑1859/‑6201) | PF3D7_0730200 ← / → PF3D7_0730300 | AP‑4 complex subunit beta, putative/AP2 domain transcription factor AP2‑L, putative | |
| NC_004328 | 1,294,544 | Δ2 bp | ? | 100% | intergenic (‑5145/‑2914) | PF3D7_0730200 ← / → PF3D7_0730300 | AP‑4 complex subunit beta, putative/AP2 domain transcription factor AP2‑L, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004328 | 1,295,374 | C→T | ? | 100% | intergenic (‑5975/‑2085) | PF3D7_0730200 ← / → PF3D7_0730300 | AP‑4 complex subunit beta, putative/AP2 domain transcription factor AP2‑L, putative |
| NC_004328 | 1,297,401 | 16,800 bp x 3 | 100% | amplification | PF3D7_0730300–[PF3D7_0730500] | PF3D7_0730300, PF3D7_0730400, PF3D7_0730400, PF3D7_0730400, [PF3D7_0730500] | |
| NC_004328 | 1,325,701 | 36,800 bp x 3 | 100% | amplification | [PF3D7_0730900]–[PF3D7_0731500] | [PF3D7_0730900], PF3D7_0731000, PF3D7_0731100, PF3D7_0731100, PF3D7_0731200, PF3D7_0731200, PF3D7_0731300, PF3D7_0731300, PF3D7_0731500, [PF3D7_0731500] | |
| NC_004328 | 1,336,736 | C→T | ? | 100% | intergenic (‑1798/‑2223) | PF3D7_0731000 ← / → PF3D7_0731100 | uncharacterized ncRNA/EMP1‑trafficking protein |
| NC_004328 | 1,368,201 | 2,400 bp x 5 | 100% | amplification | [PF3D7_0731600] | [PF3D7_0731600] | |
| NC_004328 | 1,379,201 | 13,600 bp x 4 | 100% | amplification | [PF3D7_0731800]–PF3D7_0732200 | [PF3D7_0731800], PF3D7_0732000, PF3D7_0732000, PF3D7_0732200, PF3D7_0732200 | |
| NC_004328 | 1,394,820 | +T | ? | 100% | intergenic (+2777/+1617) | PF3D7_0732200 → / ← PF3D7_0732300 | rifin/rifin |
| NC_004328 | 1,396,501 | 15,500 bp x 4 | 100% | amplification | [PF3D7_0732300]–[PF3D7_0732800] | [PF3D7_0732300], PF3D7_0732300, PF3D7_0732400, PF3D7_0732400, PF3D7_0732500, PF3D7_0732500, PF3D7_0732600, PF3D7_0732700, PF3D7_0732700, PF3D7_0732800, [PF3D7_0732800] | |
| NC_004328 | 1,417,601 | 27,700 bp x 9 | 100% | amplification | [PF3D7_0733000]–PF3D7_0733000 | [PF3D7_0733000], PF3D7_0733000 | |
| NC_004328 | 1,428,120 | Δ1 bp | ? | 100% | intergenic (‑1886/–) | PF3D7_0733000 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 5,801 | 33,200 bp x 9 | 100% | amplification | PF3D7_0800100–[PF3D7_0800200] | PF3D7_0800100, PF3D7_0800100, PF3D7_0800200, [PF3D7_0800200] | |
| NC_004329 | 15,071 | A→T | 100% | 100% | intergenic (–/‑6290) | – / → PF3D7_0800100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004329 | 40,901 | 7,700 bp x 8 | 100% | amplification | PF3D7_0800300 | PF3D7_0800300 | |
| NC_004329 | 49,601 | 110,100 bp x 3 | 100% | amplification | PF3D7_0800300–PF3D7_0802100 | 30 genes PF3D7_0800300, PF3D7_0800400, PF3D7_0800400, PF3D7_0800500, PF3D7_0800500, PF3D7_0800600, PF3D7_0800600, PF3D7_0800650, PF3D7_0800700, PF3D7_0800700, PF3D7_0800700, PF3D7_0800800, PF3D7_0800800, PF3D7_0801000, PF3D7_0801000, PF3D7_0801100, PF3D7_0801200, PF3D7_0801300, PF3D7_0801400, PF3D7_0801400, PF3D7_0801500, PF3D7_0801600, PF3D7_0801700, PF3D7_0801700, PF3D7_0801700, PF3D7_0801800, PF3D7_0801900, PF3D7_0802000, PF3D7_0802100, PF3D7_0802100 |
|
| NC_004329 | 109,825 | G→A | ? | 100% | intergenic (‑268/‑2474) | PF3D7_0801600 ← / → PF3D7_0801700 | conserved protein, unknown function/sentrin‑specific protease 2, putative |
| NC_004329 | 165,384 | A→T | ? | 100% | intergenic (‑5716/‑32) | PF3D7_0802100 ← / → PF3D7_0802200 | AP2 domain transcription factor, putative/1‑cys peroxiredoxin |
| NC_004329 | 165,388 | A→T | ? | 100% | intergenic (‑5720/‑28) | PF3D7_0802100 ← / → PF3D7_0802200 | AP2 domain transcription factor, putative/1‑cys peroxiredoxin |
| NC_004329 | 165,401 | 131,500 bp x 3 | 100% | amplification | PF3D7_0802200–PF3D7_0805300 | 76 genes PF3D7_0802200, PF3D7_0802300, PF3D7_0802400, PF3D7_0802400, PF3D7_0802400, PF3D7_0802500, PF3D7_0802600, PF3D7_0802600, PF3D7_0802600, PF3D7_0802600, PF3D7_0802600, PF3D7_0802700, PF3D7_0802700, PF3D7_0802700, PF3D7_0802700, PF3D7_0802700, PF3D7_0802800, PF3D7_0802800, PF3D7_0802900, PF3D7_0802900, PF3D7_0803000, PF3D7_0803100, PF3D7_0803200, PF3D7_0803200, PF3D7_0803300, PF3D7_0803300, PF3D7_0803300, PF3D7_0803300, PF3D7_0803300, PF3D7_0803300, PF3D7_0803300, PF3D7_0803400, PF3D7_0803500, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803600.1, PF3D7_0803700, PF3D7_0803800, PF3D7_0803800, PF3D7_0803900, PF3D7_0804000, PF3D7_0804100, PF3D7_0804000, PF3D7_0804200, PF3D7_0804000, PF3D7_0804300, PF3D7_0804400, PF3D7_0804500, PF3D7_0804500, PF3D7_0804600, PF3D7_0804600, PF3D7_0804700, PF3D7_0804800, PF3D7_0804900, PF3D7_0805000, PF3D7_0805000, PF3D7_0805000, PF3D7_0805000, PF3D7_0805000, PF3D7_0805000, PF3D7_0805000, PF3D7_0805100, PF3D7_0805200, PF3D7_0805300 |
|
| NC_004329 | 223,660 | Δ2 bp | ? | 100% | intergenic (+1369/‑101) | PF3D7_0803500 → / → PF3D7_0803600.1 | AAA family ATPase, putative/conserved Plasmodium protein, unknown function |
| NC_004329 | 282,979 | Δ4 bp | ? | 100% | intergenic (‑1793/+84) | PF3D7_0804900 ← / ← PF3D7_0805000 | GTPase‑activating protein, putative/alpha/beta hydrolase, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 286,335 | C→T | ? | 100% | intergenic (‑1813/‑624) | PF3D7_0805000 ← / → PF3D7_0805100 | alpha/beta hydrolase, putative/conserved protein, unknown function |
| NC_004329 | 286,348 | A→T | ? | 100% | intergenic (‑1826/‑611) | PF3D7_0805000 ← / → PF3D7_0805100 | alpha/beta hydrolase, putative/conserved protein, unknown function |
| NC_004329 | 290,081 | C→T | ? | 100% | intergenic (+1461/‑821) | PF3D7_0805100 → / → PF3D7_0805200 | conserved protein, unknown function/gamete release protein, putative |
| NC_004329 | 302,401 | 210,100 bp x 3 | 100% | amplification | PF3D7_0805400–PF3D7_0809900 | 125 genes PF3D7_0805400, PF3D7_0805400, PF3D7_0805400, PF3D7_0805400, PF3D7_0805400, PF3D7_0805400, PF3D7_0805500, PF3D7_0805600, PF3D7_0805700, PF3D7_0805700, PF3D7_0805800, PF3D7_0805900, PF3D7_0805900, PF3D7_0805900, PF3D7_0805900, PF3D7_0805900, PF3D7_0805900, PF3D7_0806000, PF3D7_0806000, PF3D7_0806100, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806200, PF3D7_0806300, PF3D7_0806300, PF3D7_0806300, PF3D7_0806400, PF3D7_0806500, PF3D7_0806600, PF3D7_0806600, PF3D7_0806600, PF3D7_0806600, PF3D7_0806600, PF3D7_0806700, PF3D7_0806700, PF3D7_0806700, PF3D7_0806800, PF3D7_0806900, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807000, PF3D7_0807100, PF3D7_0807200, PF3D7_0807200, PF3D7_0807300, PF3D7_0807300, PF3D7_0807300, PF3D7_0807300, PF3D7_0807400, PF3D7_0807400, PF3D7_0807400, PF3D7_0807400, PF3D7_0807400, PF3D7_0807500, PF3D7_0807500, PF3D7_0807500, PF3D7_0807600, PF3D7_0807600, PF3D7_0807600, PF3D7_0807600, PF3D7_0807700, PF3D7_0807700, PF3D7_0807700, PF3D7_0807700, PF3D7_0807700, PF3D7_0807800, PF3D7_0807800, PF3D7_0807900, PF3D7_0807900, PF3D7_0807900, PF3D7_0808000, PF3D7_0808100, PF3D7_0808100, PF3D7_0808100, PF3D7_0808200, PF3D7_0808300, PF3D7_0808300, PF3D7_0808300, PF3D7_0808400, PF3D7_0808400, PF3D7_0808450, PF3D7_0808450, PF3D7_0808500, PF3D7_0808600, PF3D7_0808600, PF3D7_0808700, PF3D7_0808700, PF3D7_0808800, PF3D7_0808800, PF3D7_0808900, PF3D7_0808900, PF3D7_0809000, PF3D7_0809100, PF3D7_0809100, PF3D7_0809200, PF3D7_0809250, PF3D7_0809400, PF3D7_0809500, PF3D7_0809600, PF3D7_0809700, PF3D7_0809700, PF3D7_0809700, PF3D7_0809700, PF3D7_0809700, PF3D7_0809800, PF3D7_0809800, PF3D7_0809800, PF3D7_0809800, PF3D7_0809900, PF3D7_0809900, PF3D7_0809900, PF3D7_0809900 |
|
| NC_004329 | 322,162 | Δ1 bp | ? | 100% | intergenic (‑3436/+205) | PF3D7_0805700 ← / ← PF3D7_0805800 | serine/threonine protein kinase, FIKK family/conserved Plasmodium protein, unknown function |
| NC_004329 | 325,476 | +AT | 100% | intergenic (‑18/+142) | PF3D7_0805900 ← / ← PF3D7_0805900 | conserved protein, unknown function/conserved protein, unknown function | |
| NC_004329 | 345,346 | Δ2 bp | ? | 100% | intergenic (+525/+80) | PF3D7_0806400 → / ← PF3D7_0806500 | UDP‑N‑acetylglucosamine transferase subunit ALG13, putative/DnaJ protein, putative |
| NC_004329 | 372,051 | (A)24→23 | 100% | intergenic (+29/‑86) | PF3D7_0807000 → / → PF3D7_0807000 | YEATS domain‑containing protein, putative/YEATS domain‑containing protein, putative | |
| NC_004329 | 377,321 | C→T | ? | 100% | intergenic (‑454/‑703) | PF3D7_0807100 ← / → PF3D7_0807200 | DNA helicase PSH3/conserved Plasmodium membrane protein, unknown function |
| NC_004329 | 377,330 | C→T | ? | 100% | intergenic (‑463/‑694) | PF3D7_0807100 ← / → PF3D7_0807200 | DNA helicase PSH3/conserved Plasmodium membrane protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 377,337 | A→T | ? | 100% | intergenic (‑470/‑687) | PF3D7_0807100 ← / → PF3D7_0807200 | DNA helicase PSH3/conserved Plasmodium membrane protein, unknown function |
| NC_004329 | 379,763 | C→T | ? | 100% | intergenic (+317/‑1801) | PF3D7_0807200 → / → PF3D7_0807300 | conserved Plasmodium membrane protein, unknown function/ras‑related protein Rab‑18 |
| NC_004329 | 379,940 | G→T | ? | 100% | intergenic (+494/‑1624) | PF3D7_0807200 → / → PF3D7_0807300 | conserved Plasmodium membrane protein, unknown function/ras‑related protein Rab‑18 |
| NC_004329 | 415,804 | Δ1 bp | 100% | intergenic (+636/+540) | PF3D7_0808100 → / ← PF3D7_0808200 | AP‑3 complex subunit delta, putative/plasmepsin X | |
| NC_004329 | 507,760 | T→A | ? | 100% | intergenic (‑1062/+464) | PF3D7_0809800 ← / ← PF3D7_0809900 | conserved Plasmodium protein, unknown function/JmjC domain‑containing protein, putative |
| NC_004329 | 521,173 | G→T | ? | 100% | intergenic (‑1182/‑14) | PF3D7_0810100 ← / → PF3D7_0810200 | apicoplast ribosomal protein L33 precursor, putative/ABC1 family, putative |
| NC_004329 | 521,901 | 42,400 bp x 2 | 100% | duplication | [PF3D7_0810200]–PF3D7_0811200 | 34 genes [PF3D7_0810200], PF3D7_0810300, PF3D7_0810300, PF3D7_0810300, PF3D7_0810300, PF3D7_0810400, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810500, PF3D7_0810600, PF3D7_0810700, PF3D7_0810700, PF3D7_0810700, PF3D7_0810700, PF3D7_0810700, PF3D7_0810700, PF3D7_0810800, PF3D7_0810800, PF3D7_0810800, PF3D7_0810900.1, PF3D7_0810900.1, PF3D7_0810900.1, PF3D7_0810900.1, PF3D7_0811000, PF3D7_0811000, PF3D7_0811100, PF3D7_0811200, PF3D7_0811200 |
|
| NC_004329 | 541,358 | Δ2 bp | 100% | intergenic (‑4739/‑612) | PF3D7_0810500 ← / → PF3D7_0810600 | protein phosphatase PPM7, putative/ATP‑dependent RNA helicase DBP1, putative | |
| NC_004329 | 567,701 | 55,800 bp x 3 | 100% | amplification | PF3D7_0811300–PF3D7_0812400 | 39 genes PF3D7_0811300, PF3D7_0811400, PF3D7_0811400, PF3D7_0811400, PF3D7_0811400, PF3D7_0811500, PF3D7_0811600, PF3D7_0811600, PF3D7_0811700, PF3D7_0811800, PF3D7_0811900, PF3D7_0811900, PF3D7_0811900, PF3D7_0811900, PF3D7_0811900, PF3D7_0811900, PF3D7_0812000, PF3D7_0812000, PF3D7_0812100, PF3D7_0812220, PF3D7_0812220, PF3D7_0812220, PF3D7_0812220, PF3D7_0812220, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812200, PF3D7_0812300, PF3D7_0812400 |
|
| NC_004329 | 604,719 | C→A | ? | 100% | intergenic (‑2472/‑204) | PF3D7_0812000 ← / → PF3D7_0812100 | conserved protein, unknown function/proteasome activator complex subunit 4, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 604,721 | C→A | ? | 100% | intergenic (‑2474/‑202) | PF3D7_0812000 ← / → PF3D7_0812100 | conserved protein, unknown function/proteasome activator complex subunit 4, putative |
| NC_004329 | 621,764 | C→T | ? | 100% | intergenic (‑1536/+41) | PF3D7_0812300 ← / ← PF3D7_0812400 | sporozoite surface protein 3, putative/karyopherin alpha |
| NC_004329 | 627,001 | 2,000 bp x 4 | 100% | amplification | [PF3D7_0812500] | [PF3D7_0812500] | |
| NC_004329 | 630,835 | Δ1 bp | ? | 100% | intergenic (‑1890/+749) | PF3D7_0812500 ← / ← PF3D7_0812600 | RNA‑binding protein, putative/ubiquitin‑conjugating enzyme E2, putative |
| NC_004329 | 630,841 | T→A | ? | 100% | intergenic (‑1896/+743) | PF3D7_0812500 ← / ← PF3D7_0812600 | RNA‑binding protein, putative/ubiquitin‑conjugating enzyme E2, putative |
| NC_004329 | 630,843 | T→A | ? | 100% | intergenic (‑1898/+741) | PF3D7_0812500 ← / ← PF3D7_0812600 | RNA‑binding protein, putative/ubiquitin‑conjugating enzyme E2, putative |
| NC_004329 | 633,901 | 192,500 bp x 3 | 100% | amplification | PF3D7_0812700–PF3D7_0818100 | 154 genes PF3D7_0812700, PF3D7_0812800, PF3D7_0812900, PF3D7_0812900, PF3D7_0813000, PF3D7_0813100, PF3D7_0813200, PF3D7_0813200, PF3D7_0813200, PF3D7_0813200, PF3D7_0813300, PF3D7_0813300, PF3D7_0813400, PF3D7_0813400, PF3D7_0813400, PF3D7_0813400, PF3D7_0813400, PF3D7_0813400, PF3D7_0813500, PF3D7_0813600, PF3D7_0813600, PF3D7_0813600, PF3D7_0813600, PF3D7_0813700, PF3D7_0813800, PF3D7_0813900, PF3D7_0813900, PF3D7_0814000, PF3D7_0814000, PF3D7_0814100, PF3D7_0814100, PF3D7_0814100, PF3D7_0814100, PF3D7_0814100, PF3D7_0814100, PF3D7_0814200, PF3D7_0814300, PF3D7_0814400, PF3D7_0814400, PF3D7_0814400, PF3D7_0814500, PF3D7_0814600, PF3D7_0814700, PF3D7_0814900, PF3D7_0815000, PF3D7_0815100, PF3D7_0815200, PF3D7_0815300, PF3D7_0815400, PF3D7_0815400, PF3D7_0815500, PF3D7_0815500, PF3D7_0815500, PF3D7_0815500, PF3D7_0815500, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815600, PF3D7_0815700, PF3D7_0815700, PF3D7_0815800, PF3D7_0815900, PF3D7_0816000, PF3D7_0816100, PF3D7_0816100, PF3D7_0816100, PF3D7_0816100, PF3D7_0816200, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816300, PF3D7_0816400, PF3D7_0816400, PF3D7_0816400, PF3D7_0816500, PF3D7_0816500, PF3D7_0816500, PF3D7_0816600, PF3D7_0816700, PF3D7_0816700, PF3D7_0816700, PF3D7_0816700, PF3D7_0816800, PF3D7_0816800, PF3D7_0816800, PF3D7_0816800, PF3D7_0816800, PF3D7_0816800, PF3D7_0816800, PF3D7_0816900, PF3D7_0817000, PF3D7_0817100, PF3D7_0817200, PF3D7_0817300, PF3D7_0817400, PF3D7_0817400, PF3D7_0817500, PF3D7_0817500, PF3D7_0817500, PF3D7_0817500, PF3D7_0817500, PF3D7_0817500, PF3D7_0817600, PF3D7_0817600, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817700, PF3D7_0817800, PF3D7_0817800, PF3D7_0817900, PF3D7_0818000, PF3D7_0818100 |
|
| NC_004329 | 663,398 | A→T | ? | 100% | intergenic (‑1303/+2150) | PF3D7_0813400 ← / ← PF3D7_0813500 | conserved protein, unknown function/PUB domain‑containing protein, putative |
| NC_004329 | 665,425 | G→A | ? | 100% | intergenic (‑3330/+123) | PF3D7_0813400 ← / ← PF3D7_0813500 | conserved protein, unknown function/PUB domain‑containing protein, putative |
| NC_004329 | 669,081 | Δ2 bp | ? | 100% | intergenic (‑1986/‑459) | PF3D7_0813500 ← / → PF3D7_0813600 | PUB domain‑containing protein, putative/translation initiation factor SUI1, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 719,864 | Δ8 bp | ? | 100% | intergenic (+118/‑2057) | PF3D7_0815200 → / → PF3D7_0815300 | importin subunit beta, putative/FAD‑dependent monooxygenase, putative |
| NC_004329 | 732,414 | C→T | ? | 100% | intergenic (‑227/+865) | PF3D7_0815600 ← / ← PF3D7_0815700 | eukaryotic translation initiation factor 3 subunit G, putative/ubiquitin |
| NC_004329 | 751,826 | C→G | 100% | 100% | intergenic (‑1115/+116) | PF3D7_0816200 ← / ← PF3D7_0816300 | vacuolar protein sorting‑associated protein 2, putative/conserved Plasmodium protein, unknown function |
| NC_004329 | 774,131 | G→A | ? | 100% | intergenic (+394/‑168) | PF3D7_0817000 → / → PF3D7_0817100 | NEDD8‑activating enzyme E1 catalytic subunit, putative/tRNA modification GTPase, putative |
| NC_004329 | 785,497 | Δ6 bp | ? | 100% | coding (4115‑4120/6708 nt) | PF3D7_0817300 ← | conserved Plasmodium protein, unknown function |
| NC_004329 | 809,037 | A→T | ? | 100% | intergenic (‑110/+22) | PF3D7_0817700 ← / ← PF3D7_0817700 | rhoptry neck protein 5/rhoptry neck protein 5 |
| NC_004329 | 809,039 | G→T | ? | 100% | intergenic (‑112/+20) | PF3D7_0817700 ← / ← PF3D7_0817700 | rhoptry neck protein 5/rhoptry neck protein 5 |
| NC_004329 | 813,745 | Δ2 bp | ? | 100% | intergenic (‑280/‑1404) | PF3D7_0817700 ← / → PF3D7_0817800 | rhoptry neck protein 5/conserved Plasmodium protein, unknown function |
| NC_004329 | 826,359 | G→T | ? | 100% | intergenic (+257/‑82) | PF3D7_0818100 → / → PF3D7_0818100 | zinc finger protein, putative/zinc finger protein, putative |
| NC_004329 | 829,901 | 6,500 bp x 3 | 100% | amplification | PF3D7_0818200–[PF3D7_0818400] | PF3D7_0818200, PF3D7_0818200, PF3D7_0818200, PF3D7_0818200, PF3D7_0818300, PF3D7_0818300, PF3D7_0818300, PF3D7_0818300, [PF3D7_0818400] | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 831,417 | C→T | 100% | intergenic (+215/‑9) | PF3D7_0818200 → / → PF3D7_0818200 | 14‑3‑3 protein/14‑3‑3 protein | |
| NC_004329 | 840,150 | C→T | ? | 100% | intergenic (‑3302/‑2167) | PF3D7_0818400 ← / → PF3D7_0818500 | rRNA‑processing protein FCF1, putative/zinc finger protein, putative |
| NC_004329 | 841,901 | 119,600 bp x 3 | 100% | amplification | PF3D7_0818500–[PF3D7_0821300] | 101 genes PF3D7_0818500, PF3D7_0818500, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818600, PF3D7_0818700, PF3D7_0818700, PF3D7_0818700, PF3D7_0818700, PF3D7_0818700, PF3D7_0818800, PF3D7_0818900, PF3D7_0819000, PF3D7_0819000, PF3D7_0819000, PF3D7_0819000, PF3D7_0819000, PF3D7_0819100, PF3D7_0819100, PF3D7_0819200, PF3D7_0819300, PF3D7_0819400, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819500, PF3D7_0819600, PF3D7_0819600, PF3D7_0819700, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819800, PF3D7_0819900, PF3D7_0819900, PF3D7_0819900, PF3D7_0819900, PF3D7_0820000, PF3D7_0820000, PF3D7_0820000, PF3D7_0820000, PF3D7_0820000, PF3D7_0820100, PF3D7_0820100, PF3D7_0820100, PF3D7_0820100, PF3D7_0820200, PF3D7_0820300, PF3D7_0820400, PF3D7_0820400, PF3D7_0820500, PF3D7_0820600, PF3D7_0820600, PF3D7_0820600, PF3D7_0820700, PF3D7_0820700, PF3D7_0820800, PF3D7_0820900, PF3D7_0820900, PF3D7_0820900, PF3D7_0821000, PF3D7_0821000, PF3D7_0821000, PF3D7_0821000, PF3D7_0821000, PF3D7_0821100, PF3D7_0821100, PF3D7_0821200, PF3D7_0821300, PF3D7_0821300, [PF3D7_0821300] |
|
| NC_004329 | 848,222 | Δ1 bp | ? | 100% | intergenic (‑842/+55) | PF3D7_0818600 ← / ← PF3D7_0818700 | BEM46‑like protein, putative/DNA helicase, putative |
| NC_004329 | 883,766 | Δ8 bp | ? | 100% | intergenic (+90/‑157) | PF3D7_0819500 → / → PF3D7_0819500 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004329 | 884,494 | C→T | ? | 100% | intergenic (+104/+704) | PF3D7_0819500 → / ← PF3D7_0819600 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004329 | 965,801 | 5,800 bp x 3 | 100% | amplification | PF3D7_0821400–[PF3D7_0821600] | PF3D7_0821400, PF3D7_0821400, PF3D7_0821500, [PF3D7_0821600] | |
| NC_004329 | 977,301 | 43,100 bp x 3 | 100% | amplification | PF3D7_0821900–PF3D7_0823100 | 39 genes PF3D7_0821900, PF3D7_0821900, PF3D7_0821900, PF3D7_0821900, PF3D7_0822000, PF3D7_0822000, PF3D7_0822100, PF3D7_0822200, PF3D7_0822200, PF3D7_0822200, PF3D7_0822300, PF3D7_0822300, PF3D7_0822400, PF3D7_0822400, PF3D7_0822400, PF3D7_0822400, PF3D7_0822400, PF3D7_0822400, PF3D7_0822400, PF3D7_0822500, PF3D7_0822500, PF3D7_0822500, PF3D7_0822500, PF3D7_0822500, PF3D7_0822500, PF3D7_0822600, PF3D7_0822600, PF3D7_0822700, PF3D7_0822800, PF3D7_0822900, PF3D7_0823000, PF3D7_0823000, PF3D7_0823000, PF3D7_0823000, PF3D7_0823100, PF3D7_0823100, PF3D7_0823100, PF3D7_0823100, PF3D7_0823100 |
|
| NC_004329 | 986,625 | Δ2 bp | 100% | intergenic (+63/‑137) | PF3D7_0822200 → / → PF3D7_0822200 | phosphorylated CTD interacting factor 1 WW domain‑containing protein, putative/phosphorylated CTD interacting factor 1 WW domain‑containing protein, putative | |
| NC_004329 | 1,028,635 | Δ2 bp | ? | 100% | intergenic (‑4789/‑116) | PF3D7_0823200 ← / → PF3D7_0823300 | RNA‑binding protein, putative/histone acetyltransferase GCN5 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 1,029,001 | 316,500 bp x 3 | 100% | amplification | [PF3D7_0823300]–PF3D7_0831400 | 172 genes [PF3D7_0823300], PF3D7_0823300, PF3D7_0823300, PF3D7_0823300, PF3D7_0823400, PF3D7_0823400, PF3D7_0823400, PF3D7_0823400, PF3D7_0823400, PF3D7_0823500, PF3D7_0823600, PF3D7_0823700, PF3D7_0823700, PF3D7_0823800, PF3D7_0823900, PF3D7_0824000, PF3D7_0824100, PF3D7_0824200, PF3D7_0824200, PF3D7_0824200, PF3D7_0824300, PF3D7_0824400, PF3D7_0824500, PF3D7_0824500, PF3D7_0824600, PF3D7_0824600, PF3D7_0824600, PF3D7_0824600, PF3D7_0824600, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824700, PF3D7_0824800, PF3D7_0824900, PF3D7_0825000, PF3D7_0825000, PF3D7_0825100, PF3D7_0825100, PF3D7_0825100, PF3D7_0825100, PF3D7_0825100, PF3D7_0825100, PF3D7_0825200, PF3D7_0825200, PF3D7_0825200, PF3D7_0825200, PF3D7_0825300, PF3D7_0825400, PF3D7_0825400, PF3D7_0825400, PF3D7_0825400, PF3D7_0825400, PF3D7_0825500, PF3D7_0825600, PF3D7_0825700, PF3D7_0825800, PF3D7_0825900, PF3D7_0826000, PF3D7_0826100, PF3D7_0826200, PF3D7_0826300, PF3D7_0826400, PF3D7_0826400, PF3D7_0826400, PF3D7_0826400, PF3D7_0826400, PF3D7_0826400, PF3D7_0826400, PF3D7_0826400, PF3D7_0826500, PF3D7_0826600, PF3D7_0826700, PF3D7_0826800, PF3D7_0826700, PF3D7_0826900, PF3D7_0826900, PF3D7_0826900, PF3D7_0827000, PF3D7_0827100, PF3D7_0827200, PF3D7_0827300, PF3D7_0827400, PF3D7_0827500, PF3D7_0827600, PF3D7_0827600, PF3D7_0827700, PF3D7_0827800, PF3D7_0827900, PF3D7_0827900, PF3D7_0828000, PF3D7_0828000, PF3D7_0828000, PF3D7_0828000, PF3D7_0828100, PF3D7_0828100, PF3D7_0828200, PF3D7_0828300, PF3D7_0828400, PF3D7_0828500, PF3D7_0828500, PF3D7_0828500, PF3D7_0828500, PF3D7_0828600, PF3D7_0828600, PF3D7_0828600, PF3D7_0828600, PF3D7_0828700, PF3D7_0828800, PF3D7_0828900, PF3D7_0828900, PF3D7_0828900, PF3D7_0828900, PF3D7_0829000, PF3D7_0829000, PF3D7_0829100, PF3D7_0829100, PF3D7_0829100, PF3D7_0829100, PF3D7_0829100, PF3D7_0829100, PF3D7_0829100, PF3D7_0829200, PF3D7_0829300, PF3D7_0829300, PF3D7_0829300, PF3D7_0829300, PF3D7_0829400, PF3D7_0829500, PF3D7_0829600, PF3D7_0829700, PF3D7_0829800, PF3D7_0829900, PF3D7_0830000, PF3D7_0830100, PF3D7_0830200, PF3D7_0830300, PF3D7_0830400, PF3D7_0830400, PF3D7_0830500, PF3D7_0830500, PF3D7_0830600, PF3D7_0830600, PF3D7_0830700, PF3D7_0830700, PF3D7_0830800, PF3D7_0830800, PF3D7_0830900, PF3D7_0830900, PF3D7_0831000, PF3D7_0831000, PF3D7_0831100, PF3D7_0831100, PF3D7_0831100, PF3D7_0831200, PF3D7_0831200, PF3D7_0831300, PF3D7_0831300, PF3D7_0831400, PF3D7_0831400 |
|
| NC_004329 | 1,080,637 | A→T | ? | 100% | D785K (GAT→AAA) | PF3D7_0824900 ← | conserved Plasmodium protein, unknown function |
| NC_004329 | 1,080,639 | C→T | ? | 100% | D785K (GAT→AAA) | PF3D7_0824900 ← | conserved Plasmodium protein, unknown function |
| NC_004329 | 1,120,695 | T→C | 100% | 100% | K6150K (AAA→AAG) | PF3D7_0826100 ← | HECT‑like E3 ubiquitin ligase, putative |
| NC_004329 | 1,222,795 | A→T | 100% | 100% | intergenic (‑112/+1299) | PF3D7_0828300 ← / ← PF3D7_0828400 | conserved protein, unknown function/mitochondrial inner membrane protein OXA1, putative |
| NC_004329 | 1,228,190 | Δ2 bp | ? | 100% | intergenic (‑26/+167) | PF3D7_0828500 ← / ← PF3D7_0828500 | translation initiation factor eIF‑2B subunit alpha, putative/translation initiation factor eIF‑2B subunit alpha, putative |
| NC_004329 | 1,245,167 | G→T | ? | 100% | intergenic (‑2272/‑44) | PF3D7_0828900 ← / → PF3D7_0829000 | conserved protein, unknown function/conserved Plasmodium membrane protein, unknown function |
| NC_004329 | 1,245,174 | A→T | ? | 100% | intergenic (‑2279/‑37) | PF3D7_0828900 ← / → PF3D7_0829000 | conserved protein, unknown function/conserved Plasmodium membrane protein, unknown function |
| NC_004329 | 1,245,179 | A→T | ? | 100% | intergenic (‑2284/‑32) | PF3D7_0828900 ← / → PF3D7_0829000 | conserved protein, unknown function/conserved Plasmodium membrane protein, unknown function |
| NC_004329 | 1,272,409 | Δ2 bp | ? | 100% | intergenic (+319/‑308) | PF3D7_0829700 → / → PF3D7_0829800 | uncharacterized ncRNA/uncharacterized ncRNA |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004329 | 1,301,433 | Δ2 bp | ? | 100% | intergenic (‑3105/‑1889) | PF3D7_0830500 ← / → PF3D7_0830600 | sporozoite and liver stage tryptophan‑rich protein, putative/Plasmodium exported protein (PHISTc), unknown function |
| NC_004329 | 1,353,301 | 14,300 bp x 3 | 100% | amplification | PF3D7_0831500–PF3D7_0831700 | PF3D7_0831500, PF3D7_0831500, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831600, PF3D7_0831700 | |
| NC_004329 | 1,359,273 | C→T | ? | 100% | intergenic (+131/‑14) | PF3D7_0831600 → / → PF3D7_0831600 | cytoadherence linked asexual protein 8/cytoadherence linked asexual protein 8 |
| NC_004329 | 1,374,201 | 44,300 bp x 3 | 100% | amplification | PF3D7_0831800–[PF3D7_0833000] | 23 genes PF3D7_0831800, PF3D7_0831800, PF3D7_0832000, PF3D7_0832000, PF3D7_0832200.1, PF3D7_0832200.1, PF3D7_0832200.1, PF3D7_0832200.1, PF3D7_0832200.1, PF3D7_0832300, PF3D7_0832300, PF3D7_0832400, PF3D7_0832400, PF3D7_0832500, PF3D7_0832500, PF3D7_0832600, PF3D7_0832600, PF3D7_0832800, PF3D7_0832800, PF3D7_0832900, PF3D7_0832900, PF3D7_0833000, [PF3D7_0833000] |
|
| NC_004329 | 1,384,272 | Δ6 bp | ? | 100% | intergenic (‑60/+53) | PF3D7_0832000 ← / ← PF3D7_0832000 | stevor/stevor |
| NC_004329 | 1,420,701 | 9,800 bp x 4 | 100% | amplification | PF3D7_0833100–PF3D7_0833200 | PF3D7_0833100, PF3D7_0833100, PF3D7_0833200, PF3D7_0833200 | |
| NC_004329 | 1,425,966 | C→A | ? | 100% | intergenic (‑3889/‑918) | PF3D7_0833100 ← / → PF3D7_0833200 | rifin/rifin |
| NC_004329 | 1,435,801 | 37,100 bp x 18 | 100% | amplification | [PF3D7_0833500]–PF3D7_0833500 | [PF3D7_0833500], PF3D7_0833500 | |
| NC_004330 | 26,201 | 20,800 bp x 5 | 100% | amplification | PF3D7_0900100–PF3D7_0900600 | PF3D7_0900100, PF3D7_0900200, PF3D7_0900200, PF3D7_0900300, PF3D7_0900300, PF3D7_0900400, PF3D7_0900400, PF3D7_0900500, PF3D7_0900500, PF3D7_0900600 | |
| NC_004330 | 30,680 | G→T | 100% | T83K (ACA→AAA) | PF3D7_0900200 ← | rifin | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 47,601 | 275,800 bp x 3 | 100% | amplification | PF3D7_0900700–PF3D7_0906600 | 181 genes PF3D7_0900700, PF3D7_0900700, PF3D7_0900900, PF3D7_0900900, PF3D7_0901000, PF3D7_0901000, PF3D7_0901100, PF3D7_0901100, PF3D7_0901200, PF3D7_0901300, PF3D7_0901300, PF3D7_0901400, PF3D7_0901400, PF3D7_0901500, PF3D7_0901500, PF3D7_0901600, PF3D7_0901600, PF3D7_0901700, PF3D7_0901700, PF3D7_0901800, PF3D7_0901800, PF3D7_0901900, PF3D7_0901900, PF3D7_0901900, PF3D7_0902000, PF3D7_0902000, PF3D7_0902000, PF3D7_0902100, PF3D7_0902100, PF3D7_0902100, PF3D7_0902200, PF3D7_0902200, PF3D7_0902200, PF3D7_0902300, PF3D7_0902300, PF3D7_0902300, PF3D7_0902400, PF3D7_0902400, PF3D7_0902400, PF3D7_0902500, PF3D7_0902500, PF3D7_0902500, PF3D7_0902600.1, PF3D7_0902600.1, PF3D7_0902600.1, PF3D7_0902800, PF3D7_0902800, PF3D7_0902800, PF3D7_0902800, PF3D7_0902900, PF3D7_0903000, PF3D7_0903100, PF3D7_0903100, PF3D7_0903200, PF3D7_0903200, PF3D7_0903200, PF3D7_0903200, PF3D7_0903200, PF3D7_0903200, PF3D7_0903200, PF3D7_0903300, PF3D7_0903400, PF3D7_0903400, PF3D7_0903500, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903600.1, PF3D7_0903700, PF3D7_0903700, PF3D7_0903700, PF3D7_0903800, PF3D7_0903800, PF3D7_0903900, PF3D7_0903900, PF3D7_0904000, PF3D7_0904100, PF3D7_0904100, PF3D7_0904100, PF3D7_0904100, PF3D7_0904100, PF3D7_0904100, PF3D7_0904200, PF3D7_0904200, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904300, PF3D7_0904400, PF3D7_0904500, PF3D7_0904500, PF3D7_0904600, PF3D7_0904600, PF3D7_0904700, PF3D7_0904700, PF3D7_0904800, PF3D7_0904800, PF3D7_0904900, PF3D7_0904900, PF3D7_0904900, PF3D7_0905000, PF3D7_0905100, PF3D7_0905100, PF3D7_0905100, PF3D7_0905200, PF3D7_0905300, PF3D7_0905400, PF3D7_0905400, PF3D7_0905400, PF3D7_0905400, PF3D7_0905400, PF3D7_0905400, PF3D7_0905400, PF3D7_0905500, PF3D7_0905600, PF3D7_0905600, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905700.1, PF3D7_0905800, PF3D7_0905800, PF3D7_0905800, PF3D7_0905900, PF3D7_0906000, PF3D7_0906000, PF3D7_0906100, PF3D7_0906100, PF3D7_0906100, PF3D7_0906100, PF3D7_0906100, PF3D7_0906100, PF3D7_0906100, PF3D7_0906200, PF3D7_0906300, PF3D7_0906400, PF3D7_0906500, PF3D7_0906600 |
|
| NC_004330 | 97,848 | G→A | ? | 100% | intergenic (‑2235/+327) | PF3D7_0902100 ← / ← PF3D7_0902200 | serine/threonine protein kinase, FIKK family/serine/threonine protein kinase, FIKK family |
| NC_004330 | 104,804 | Δ1 bp | ? | 100% | intergenic (‑211/+1710) | PF3D7_0902300 ← / ← PF3D7_0902400 | serine/threonine protein kinase, FIKK family/serine/threonine protein kinase, FIKK family |
| NC_004330 | 139,357 | Δ1 bp | ? | 100% | intergenic (‑3770/‑1620) | PF3D7_0903200 ← / → PF3D7_0903300 | ras‑related protein RAB7/conserved protein, unknown function |
| NC_004330 | 236,870 | +ATATATAT | 100% | intergenic (‑21/+115) | PF3D7_0905100 ← / ← PF3D7_0905100 | nucleoporin NUP221, putative/nucleoporin NUP221, putative | |
| NC_004330 | 250,999 | +AT | ? | 100% | intergenic (‑2139/+354) | PF3D7_0905200 ← / ← PF3D7_0905300 | mitochondrial carrier protein, putative/dynein heavy chain, putative |
| NC_004330 | 276,862 | G→A | ? | 100% | intergenic (‑2073/‑1507) | PF3D7_0905400 ← / → PF3D7_0905500 | high molecular weight rhoptry protein 3/conserved protein, unknown function |
| NC_004330 | 323,401 | Δ7,100 bp | 100% | [PF3D7_0906700] | [PF3D7_0906700] | ||
| NC_004330 | 330,501 | 90,100 bp x 2 | 100% | duplication | [PF3D7_0906700]–PF3D7_0909300 | 89 genes [PF3D7_0906700], PF3D7_0906800, PF3D7_0906890, PF3D7_0906910, PF3D7_0907000, PF3D7_0907000, PF3D7_0907100, PF3D7_0907200, PF3D7_0907300, PF3D7_0907400, PF3D7_0907500, PF3D7_0907500, PF3D7_0907500, PF3D7_0907500, PF3D7_0907500, PF3D7_0907500, PF3D7_0907600, PF3D7_0907600, PF3D7_0907700, PF3D7_0907800, PF3D7_0907900, PF3D7_0907900, PF3D7_0908000, PF3D7_0908000, PF3D7_0908000, PF3D7_0908100, PF3D7_0908100, PF3D7_0908100, PF3D7_0908200, PF3D7_0908200, PF3D7_0908200, PF3D7_0908200, PF3D7_0908200, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908300.1, PF3D7_0908400, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908500, PF3D7_0908600, PF3D7_0908700, PF3D7_0908700, PF3D7_0908700, PF3D7_0908700, PF3D7_0908700, PF3D7_0908700, PF3D7_0908700, PF3D7_0908700, PF3D7_0908800, PF3D7_0908800, PF3D7_0908900, PF3D7_0908900, PF3D7_0909000, PF3D7_0909000, PF3D7_0909000, PF3D7_0909000, PF3D7_0909000, PF3D7_0909100, PF3D7_0909200, PF3D7_0909200, PF3D7_0909300 |
|
| NC_004330 | 356,619 | Δ2 bp | ? | 100% | intergenic (‑39/+84) | PF3D7_0907500 ← / ← PF3D7_0907500 | conserved protein, unknown function/conserved protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 369,339 | C→A | ? | 100% | intergenic (‑550/+531) | PF3D7_0907900 ← / ← PF3D7_0908000 | peptide deformylase/plasma membrane protein 1, putative |
| NC_004330 | 389,557 | C→T | ? | 100% | intergenic (+821/+48) | PF3D7_0908400 → / ← PF3D7_0908500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004330 | 422,117 | Δ1 bp | 100% | intergenic (‑435/‑2054) | PF3D7_0909300 ← / → PF3D7_0909400 | apoptosis‑related protein/exoribonuclease, putative | |
| NC_004330 | 422,134 | (T)18→17 | 100% | intergenic (‑452/‑2037) | PF3D7_0909300 ← / → PF3D7_0909400 | apoptosis‑related protein/exoribonuclease, putative | |
| NC_004330 | 424,201 | 7,900 bp x 4 | 100% | amplification | [PF3D7_0909400]–PF3D7_0909500 | [PF3D7_0909400], PF3D7_0909500 | |
| NC_004330 | 435,141 | C→T | ? | 100% | intergenic (‑1/+124) | PF3D7_0909600 ← / ← PF3D7_0909600 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004330 | 442,301 | 186,100 bp x 2 | 100% | duplication | [PF3D7_0909700]–PF3D7_0914600 | 117 genes [PF3D7_0909700], PF3D7_0909800, PF3D7_0909800, PF3D7_0909800, PF3D7_0909900, PF3D7_0910000, PF3D7_0910100, PF3D7_0910100, PF3D7_0910100, PF3D7_0910100, PF3D7_0910100, PF3D7_0910100, PF3D7_0910200, PF3D7_0910300, PF3D7_0910400, PF3D7_0910500, PF3D7_0910600, PF3D7_0910600, PF3D7_0910600, PF3D7_0910600, PF3D7_0910600, PF3D7_0910600, PF3D7_0910600, PF3D7_0910700, PF3D7_0910800, PF3D7_0910900, PF3D7_0910900, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911000, PF3D7_0911100, PF3D7_0911100, PF3D7_0911200, PF3D7_0911300, PF3D7_0911300, PF3D7_0911400, PF3D7_0911400, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911500.1, PF3D7_0911600, PF3D7_0911700, PF3D7_0911800, PF3D7_0911900, PF3D7_0911900, PF3D7_0912000, PF3D7_0912100, PF3D7_0912200, PF3D7_0912400, PF3D7_0912400, PF3D7_0912500, PF3D7_0912500, PF3D7_0912500, PF3D7_0912500, PF3D7_0912500, PF3D7_0912500, PF3D7_0912500, PF3D7_0912600, PF3D7_0912600, PF3D7_0912700, PF3D7_0912800, PF3D7_0912900, PF3D7_0912900, PF3D7_0913000, PF3D7_0913000, PF3D7_0913000, PF3D7_0913000, PF3D7_0913000, PF3D7_0913100, PF3D7_0913150, PF3D7_0913200, PF3D7_0913300, PF3D7_0913300, PF3D7_0913400, PF3D7_0913400, PF3D7_0913500, PF3D7_0913500, PF3D7_0913500, PF3D7_0913600, PF3D7_0913700, PF3D7_0913800, PF3D7_0913800, PF3D7_0913900, PF3D7_0913900, PF3D7_0914000, PF3D7_0914100, PF3D7_0914200, PF3D7_0914200, PF3D7_0914200, PF3D7_0914200, PF3D7_0914300, PF3D7_0914300, PF3D7_0914400, PF3D7_0914400, PF3D7_0914400, PF3D7_0914400, PF3D7_0914400, PF3D7_0914400, PF3D7_0914500, PF3D7_0914500, PF3D7_0914600, PF3D7_0914600 |
|
| NC_004330 | 477,517 | C→A | ? | 100% | intergenic (+548/+260) | PF3D7_0910300 → / ← PF3D7_0910400 | conserved protein, unknown function/selenide water dikinase, putative |
| NC_004330 | 528,163 | Δ1 bp | ? | 100% | intergenic (‑185/‑1749) | PF3D7_0911500.1 ← / → PF3D7_0911600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004330 | 536,767 | +ATAT | 100% | intergenic (‑86/+1454) | PF3D7_0911800 ← / ← PF3D7_0911900 | conserved Plasmodium protein, unknown function/falstatin | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 550,773 | G→A | ? | 100% | intergenic (‑327/+653) | PF3D7_0912200 ← / ← PF3D7_0912400 | conserved protein, unknown function/alkaline phosphatase, putative |
| NC_004330 | 570,026 | Δ2 bp | ? | 100% | intergenic (‑105/+59) | PF3D7_0913000 ← / ← PF3D7_0913000 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004330 | 588,683 | C→T | ? | 100% | intergenic (+262/‑580) | PF3D7_0913600 → / → PF3D7_0913700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004330 | 600,684 | A→T | ? | 100% | intergenic (+123/+392) | PF3D7_0914000 → / ← PF3D7_0914100 | pseudouridylate synthase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 600,689 | A→T | ? | 100% | intergenic (+128/+387) | PF3D7_0914000 → / ← PF3D7_0914100 | pseudouridylate synthase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 600,694 | A→T | ? | 100% | intergenic (+133/+382) | PF3D7_0914000 → / ← PF3D7_0914100 | pseudouridylate synthase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 600,701 | A→T | ? | 100% | intergenic (+140/+375) | PF3D7_0914000 → / ← PF3D7_0914100 | pseudouridylate synthase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 600,706 | A→T | ? | 100% | intergenic (+145/+370) | PF3D7_0914000 → / ← PF3D7_0914100 | pseudouridylate synthase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 615,779 | Δ4 bp | ? | 100% | intergenic (‑287/‑2181) | PF3D7_0914300 ← / → PF3D7_0914400 | met‑10+ like protein, putative/conserved protein, unknown function |
| NC_004330 | 628,051 | C→T | ? | 100% | intergenic (+185/‑46) | PF3D7_0914600 → / → PF3D7_0914600 | transcription elongation factor 1, putative/transcription elongation factor 1, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 628,056 | C→T | ? | 100% | intergenic (+190/‑41) | PF3D7_0914600 → / → PF3D7_0914600 | transcription elongation factor 1, putative/transcription elongation factor 1, putative |
| NC_004330 | 629,707 | Δ2 bp | ? | 100% | intergenic (+1388/‑949) | PF3D7_0914600 → / → PF3D7_0914700 | transcription elongation factor 1, putative/major facilitator superfamily‑related transporter, putative |
| NC_004330 | 630,601 | 67,400 bp x 3 | 100% | amplification | PF3D7_0914700–[PF3D7_0916700] | 47 genes PF3D7_0914700, PF3D7_0914800, PF3D7_0914900, PF3D7_0915000, PF3D7_0915100, PF3D7_0915100, PF3D7_0915100, PF3D7_0915100, PF3D7_0915200, PF3D7_0915300, PF3D7_0915400, PF3D7_0915500, PF3D7_0915600, PF3D7_0915700, PF3D7_0915700, PF3D7_0915800, PF3D7_0915900, PF3D7_0916000, PF3D7_0916000, PF3D7_0916000, PF3D7_0916000, PF3D7_0916100, PF3D7_0916100, PF3D7_0916100, PF3D7_0916100, PF3D7_0916100, PF3D7_0916200, PF3D7_0916200, PF3D7_0916300, PF3D7_0916300, PF3D7_0916300, PF3D7_0916300, PF3D7_0916300, PF3D7_0916300, PF3D7_0916300, PF3D7_0916400, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916500, PF3D7_0916600, [PF3D7_0916700] |
|
| NC_004330 | 692,127 | Δ2 bp | ? | 100% | intergenic (‑21/+120) | PF3D7_0916500 ← / ← PF3D7_0916500 | ubiquitin fusion degradation protein 1/ubiquitin fusion degradation protein 1 |
| NC_004330 | 706,601 | 67,300 bp x 3 | 100% | amplification | [PF3D7_0917000]–[PF3D7_0918800] | 38 genes [PF3D7_0917000], PF3D7_0917100, PF3D7_0917200, PF3D7_0917200, PF3D7_0917300, PF3D7_0917400, PF3D7_0917500, PF3D7_0917600, PF3D7_0917700, PF3D7_0917800, PF3D7_0917900, PF3D7_0917900, PF3D7_0918000, PF3D7_0918100, PF3D7_0918100, PF3D7_0918100, PF3D7_0918100, PF3D7_0918100, PF3D7_0918100, PF3D7_0918200.1, PF3D7_0918200.1, PF3D7_0918200.1, PF3D7_0918200.1, PF3D7_0918200.1, PF3D7_0918300, PF3D7_0918300, PF3D7_0918400, PF3D7_0918400, PF3D7_0918400, PF3D7_0918400, PF3D7_0918400, PF3D7_0918500, PF3D7_0918600, PF3D7_0918700, PF3D7_0918700, PF3D7_0918700, PF3D7_0918700, [PF3D7_0918800] |
|
| NC_004330 | 762,369 | C→T | ? | 100% | noncoding (1159/2148 nt) | PF3D7_0918500 → | telomerase RNA |
| NC_004330 | 762,534 | C→T | ? | 100% | noncoding (1324/2148 nt) | PF3D7_0918500 → | telomerase RNA |
| NC_004330 | 777,501 | +ATAT | 100% | intergenic (‑3122/‑57) | PF3D7_0918800 ← / → PF3D7_0918900 | dihydrouridine synthase, putative/gamma‑glutamylcysteine synthetase | |
| NC_004330 | 777,601 | 186,000 bp x 3 | 100% | amplification | [PF3D7_0918900]–[PF3D7_0923800.1] | 149 genes [PF3D7_0918900], PF3D7_0919000, PF3D7_0919000, PF3D7_0919000, PF3D7_0919100, PF3D7_0919100, PF3D7_0919100, PF3D7_0919100, PF3D7_0919100, PF3D7_0919200, PF3D7_0919200, PF3D7_0919300, PF3D7_0919300, PF3D7_0919300, PF3D7_0919400, PF3D7_0919400, PF3D7_0919400, PF3D7_0919500, PF3D7_0919600, PF3D7_0919700, PF3D7_0919800, PF3D7_0919800, PF3D7_0919900, PF3D7_0920000, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920100, PF3D7_0920200, PF3D7_0920300, PF3D7_0920300, PF3D7_0920300, PF3D7_0920300, PF3D7_0920400, PF3D7_0920500, PF3D7_0920500, PF3D7_0920500, PF3D7_0920500, PF3D7_0920500, PF3D7_0920600, PF3D7_0920700, PF3D7_0920800, PF3D7_0920900, PF3D7_0920900, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921000.1, PF3D7_0921100, PF3D7_0921100, PF3D7_0921100, PF3D7_0921100, PF3D7_0921100, PF3D7_0921200, PF3D7_0921200, PF3D7_0921200, PF3D7_0921200, PF3D7_0921200, PF3D7_0921200, PF3D7_0921300, PF3D7_0921300, PF3D7_0921400, PF3D7_0921400, PF3D7_0921500, PF3D7_0921600, PF3D7_0921600, PF3D7_0921700, PF3D7_0921700, PF3D7_0921700, PF3D7_0921800, PF3D7_0921800, PF3D7_0921800, PF3D7_0921900, PF3D7_0922000, PF3D7_0922000, PF3D7_0922000, PF3D7_0922000, PF3D7_0922000, PF3D7_0922000, PF3D7_0922000, PF3D7_0922000, PF3D7_0922100, PF3D7_0922100, PF3D7_0922100, PF3D7_0922200, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922300, PF3D7_0922400, PF3D7_0922400, PF3D7_0922400, PF3D7_0922400, PF3D7_0922500, PF3D7_0922600, PF3D7_0922600, PF3D7_0922600, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922700, PF3D7_0922800, PF3D7_0922800, PF3D7_0922800, PF3D7_0922900, PF3D7_0922900, PF3D7_0922900, PF3D7_0922900, PF3D7_0922900, PF3D7_0923000, PF3D7_0923100, PF3D7_0923200, PF3D7_0923300, PF3D7_0923400, PF3D7_0923500, PF3D7_0923500, PF3D7_0923600, PF3D7_0923700, PF3D7_0923700, PF3D7_0923700, PF3D7_0923700, PF3D7_0923800.1, [PF3D7_0923800.1] |
|
| NC_004330 | 804,378 | C→T | ? | 100% | intergenic (+621/+39) | PF3D7_0919700 → / ← PF3D7_0919800 | pyridoxal phosphate homeostasis protein, putative/TLD domain‑containing protein |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 822,642 | C→T | ? | 100% | intergenic (‑2838/‑23) | PF3D7_0919900 ← / → PF3D7_0920000 | regulator of chromosome condensation‑PP1‑interacting protein/long chain fatty acid elongation enzyme, putative |
| NC_004330 | 827,573 | A→T | ? | 100% | intergenic (‑433/+157) | PF3D7_0920100 ← / ← PF3D7_0920200 | chaperone, putative/CS domain protein, putative |
| NC_004330 | 841,366 | G→A | ? | 100% | intergenic (+2054/‑170) | PF3D7_0920400 → / → PF3D7_0920500 | conserved Plasmodium protein, unknown function/ADP‑ribosylation factor, putative |
| NC_004330 | 934,924 | Δ2 bp | ? | 100% | intergenic (‑51/+114) | PF3D7_0922800 ← / ← PF3D7_0922800 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004330 | 942,511 | T→A | 100% | intergenic (‑13/‑1615) | PF3D7_0923100 ← / → PF3D7_0923200 | OTU domain‑containing protein, putative/nitric oxide synthase, putative | |
| NC_004330 | 972,101 | 109,600 bp x 3 | 100% | amplification | PF3D7_0924000–PF3D7_0926500 | 79 genes PF3D7_0924000, PF3D7_0924000, PF3D7_0924100, PF3D7_0924200, PF3D7_0924300, PF3D7_0924400, PF3D7_0924400, PF3D7_0924500, PF3D7_0924500, PF3D7_0924500, PF3D7_0924500, PF3D7_0924600, PF3D7_0924600, PF3D7_0924700, PF3D7_0924800, PF3D7_0924800, PF3D7_0924800, PF3D7_0924800, PF3D7_0924800, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0924900, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925000, PF3D7_0925100, PF3D7_0925200, PF3D7_0925200, PF3D7_0925200, PF3D7_0925300, PF3D7_0925400, PF3D7_0925400, PF3D7_0925500, PF3D7_0925500, PF3D7_0925500, PF3D7_0925500, PF3D7_0925500, PF3D7_0925600, PF3D7_0925600, PF3D7_0925700, PF3D7_0925800, PF3D7_0925900, PF3D7_0925900, PF3D7_0926000, PF3D7_0926000, PF3D7_0926000, PF3D7_0926000, PF3D7_0926100, PF3D7_0926200, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926300, PF3D7_0926400, PF3D7_0926400, PF3D7_0926500 |
|
| NC_004330 | 972,429 | Δ1 bp | ? | 100% | intergenic (‑4360/‑119) | PF3D7_0923900 ← / → PF3D7_0924000 | polyadenylate‑binding protein 2, putative/patatin‑like phospholipase, putative |
| NC_004330 | 980,349 | Δ2 bp | ? | 100% | intergenic (‑384/‑802) | PF3D7_0924100 ← / → PF3D7_0924200 | conserved Plasmodium protein, unknown function/heptatricopeptide repeat‑containing protein, putative |
| NC_004330 | 998,605 | G→T | ? | 100% | intergenic (‑930/‑858) | PF3D7_0924500 ← / → PF3D7_0924600 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004330 | 999,163 | +AT | 100% | intergenic (‑1488/‑300) | PF3D7_0924500 ← / → PF3D7_0924600 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 1,011,473 | G→A | ? | 100% | intergenic (+19/‑82) | PF3D7_0924900 → / → PF3D7_0924900 | alpha‑tubulin N‑acetyltransferase, putative/alpha‑tubulin N‑acetyltransferase, putative |
| NC_004330 | 1,023,880 | Δ2 bp | ? | 100% | intergenic (‑260/‑1612) | PF3D7_0925400 ← / → PF3D7_0925500 | protein phosphatase‑beta/thioredoxin‑like protein 2 |
| NC_004330 | 1,027,813 | +TATA | 100% | intergenic (+109/+848) | PF3D7_0925600 → / ← PF3D7_0925700 | zinc binding protein (Yippee), putative/histone deacetylase 1 | |
| NC_004330 | 1,057,971 | G→T | ? | 100% | intergenic (‑155/‑5082) | PF3D7_0926100 ← / → PF3D7_0926200 | protein kinase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,057,975 | G→T | ? | 100% | intergenic (‑159/‑5078) | PF3D7_0926100 ← / → PF3D7_0926200 | protein kinase, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,072,500 | T→A | ? | 100% | intergenic (‑19/+383) | PF3D7_0926400 ← / ← PF3D7_0926400 | monocarboxylate transporter, putative/monocarboxylate transporter, putative |
| NC_004330 | 1,084,801 | 16,000 bp x 3 | 100% | amplification | [PF3D7_0926600]–[PF3D7_0927100] | [PF3D7_0926600], PF3D7_0926600, PF3D7_0926600, PF3D7_0926700, PF3D7_0926800, PF3D7_0926900, PF3D7_0926900, PF3D7_0926900, PF3D7_0927000, PF3D7_0927000, [PF3D7_0927100] | |
| NC_004330 | 1,107,001 | 132,400 bp x 3 | 100% | amplification | PF3D7_0927200–PF3D7_0930800 | 123 genes PF3D7_0927200, PF3D7_0927200, PF3D7_0927200, PF3D7_0927200, PF3D7_0927200, PF3D7_0927300, PF3D7_0927400, PF3D7_0927400, PF3D7_0927400, PF3D7_0927400, PF3D7_0927400, PF3D7_0927500, PF3D7_0927500, PF3D7_0927500, PF3D7_0927500, PF3D7_0927500, PF3D7_0927600, PF3D7_0927600, PF3D7_0927700, PF3D7_0927800, PF3D7_0927800, PF3D7_0927900, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928000.1, PF3D7_0928100, PF3D7_0928150, PF3D7_0928200, PF3D7_0928200, PF3D7_0928200, PF3D7_0928300, PF3D7_0928300, PF3D7_0928300, PF3D7_0928300, PF3D7_0928300, PF3D7_0928300, PF3D7_0928400, PF3D7_0928500, PF3D7_0928500, PF3D7_0928500, PF3D7_0928500, PF3D7_0928600, PF3D7_0928700, PF3D7_0928800, PF3D7_0928900, PF3D7_0929000, PF3D7_0929000, PF3D7_0929100, PF3D7_0929100, PF3D7_0929100, PF3D7_0929100, PF3D7_0929100, PF3D7_0929100, PF3D7_0929200, PF3D7_0929200, PF3D7_0929200, PF3D7_0929200, PF3D7_0929200, PF3D7_0929200, PF3D7_0929300, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929400, PF3D7_0929500, PF3D7_0929500, PF3D7_0929500, PF3D7_0929600, PF3D7_0929600, PF3D7_0929700, PF3D7_0929800, PF3D7_0929900, PF3D7_0929900, PF3D7_0929900, PF3D7_0929900, PF3D7_0929900, PF3D7_0929900, PF3D7_0930000, PF3D7_0930100, PF3D7_0930200, PF3D7_0930200, PF3D7_0930200, PF3D7_0930200, PF3D7_0930200, PF3D7_0930300, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930400.1, PF3D7_0930500, PF3D7_0930500, PF3D7_0930600.1, PF3D7_0930600.1, PF3D7_0930600.1, PF3D7_0930600.1, PF3D7_0930700, PF3D7_0930700, PF3D7_0930700, PF3D7_0930800, PF3D7_0930800 |
|
| NC_004330 | 1,122,427 | +ATATA | 100% | intergenic (‑1096/‑1434) | PF3D7_0927500 ← / → PF3D7_0927600 | dynein light chain, putative/RNA‑binding protein, putative | |
| NC_004330 | 1,133,493 | Δ14 bp | ? | 100% | intergenic (‑1358/‑2039) | PF3D7_0927900 ← / → PF3D7_0928000.1 | phosphatidylserine decarboxylase/cytochrome c oxidase subunit 6B, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 1,164,472 | G→A | ? | 100% | intergenic (+15/‑184) | PF3D7_0929100 → / → PF3D7_0929100 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004330 | 1,175,179 | G→T | ? | 100% | intergenic (+1696/‑24) | PF3D7_0929300 → / → PF3D7_0929400 | conserved Plasmodium protein, unknown function/high molecular weight rhoptry protein 2 |
| NC_004330 | 1,188,118 | Δ1 bp | 100% | intergenic (+9/‑125) | PF3D7_0929900 → / → PF3D7_0929900 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004330 | 1,188,896 | +AT | 100% | intergenic (+46/‑750) | PF3D7_0929900 → / → PF3D7_0930000 | conserved Plasmodium protein, unknown function/procollagen lysine 5‑dioxygenase, putative | |
| NC_004330 | 1,242,101 | Δ2,500 bp | 100% | intergenic (+2526/+2668) | PF3D7_0930800 → / ← PF3D7_0930900 | conserved Plasmodium membrane protein, unknown function/NifU‑like protein, putative | |
| NC_004330 | 1,244,601 | 193,000 bp x 2 | 100% | duplication | PF3D7_0930900–PF3D7_0936300 | 132 genes PF3D7_0930900, PF3D7_0930900, PF3D7_0931000, PF3D7_0931100, PF3D7_0931200, PF3D7_0931300, PF3D7_0931400, PF3D7_0931400, PF3D7_0931400, PF3D7_0931400, PF3D7_0931500, PF3D7_0931500, PF3D7_0931500, PF3D7_0931600, PF3D7_0931600, PF3D7_0931700, PF3D7_0931700, PF3D7_0931700, PF3D7_0931800, PF3D7_0931900, PF3D7_0931900, PF3D7_0931900, PF3D7_0931900, PF3D7_0932000, PF3D7_0932000, PF3D7_0932000, PF3D7_0932000, PF3D7_0932000, PF3D7_0932100, PF3D7_0932100, PF3D7_0932100, PF3D7_0932100, PF3D7_0932100, PF3D7_0932200, PF3D7_0932200, PF3D7_0932200, PF3D7_0932200, PF3D7_0932300, PF3D7_0932400, PF3D7_0932400, PF3D7_0932500, PF3D7_0932500, PF3D7_0932500, PF3D7_0932500, PF3D7_0932500, PF3D7_0932500, PF3D7_0932500, PF3D7_0932500, PF3D7_0932600, PF3D7_0932600, PF3D7_0932700, PF3D7_0932800, PF3D7_0932800, PF3D7_0932800, PF3D7_0932900, PF3D7_0933000, PF3D7_0933100, PF3D7_0933100, PF3D7_0933100, PF3D7_0933100, PF3D7_0933200, PF3D7_0933200, PF3D7_0933200, PF3D7_0933200, PF3D7_0933200, PF3D7_0933200, PF3D7_0933200, PF3D7_0933200, PF3D7_0933300, PF3D7_0933400, PF3D7_0933500, PF3D7_0933600, PF3D7_0933700, PF3D7_0933700, PF3D7_0933800, PF3D7_0933900, PF3D7_0933900, PF3D7_0933900, PF3D7_0933900, PF3D7_0934000, PF3D7_0934100, PF3D7_0934200, PF3D7_0934300, PF3D7_0934400, PF3D7_0934500, PF3D7_0934500, PF3D7_0934600, PF3D7_0934600, PF3D7_0934600, PF3D7_0934700, PF3D7_0934700, PF3D7_0934700, PF3D7_0934800, PF3D7_0934800, PF3D7_0934800, PF3D7_0934800, PF3D7_0934800, PF3D7_0934900, PF3D7_0934900, PF3D7_0935000, PF3D7_0935100, PF3D7_0935200, PF3D7_0935300, PF3D7_0935300, PF3D7_0935300, PF3D7_0935300, PF3D7_0935390, PF3D7_0935400, PF3D7_0935500, PF3D7_0935500, PF3D7_0935500, PF3D7_0935600, PF3D7_0935600, PF3D7_0935700, PF3D7_0935700, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935800, PF3D7_0935900, PF3D7_0935900, PF3D7_0936000, PF3D7_0936000, PF3D7_0936100, PF3D7_0936200, PF3D7_0936200, PF3D7_0936300 |
|
| NC_004330 | 1,260,861 | Δ2 bp | ? | 100% | intergenic (+1623/‑165) | PF3D7_0931200 → / → PF3D7_0931300 | selenoprotein/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,266,377 | Δ2 bp | 100% | intergenic (‑362/‑1899) | PF3D7_0931500 ← / → PF3D7_0931600 | conserved Plasmodium protein, unknown function/conserved protein, unknown function | |
| NC_004330 | 1,269,451 | Δ2 bp | 100% | intergenic (+36/‑703) | PF3D7_0931600 → / → PF3D7_0931700 | conserved protein, unknown function/PIH1 domain‑containing protein, putative | |
| NC_004330 | 1,278,935 | +ATAT | 100% | intergenic (+39/+284) | PF3D7_0932000 → / ← PF3D7_0932100 | conserved Plasmodium protein, unknown function/protein MAM3, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 1,279,268 | Δ1 bp | ? | 100% | intergenic (‑3/+160) | PF3D7_0932100 ← / ← PF3D7_0932100 | protein MAM3, putative/protein MAM3, putative |
| NC_004330 | 1,311,175 | Δ1 bp | ? | 100% | intergenic (‑1232/‑265) | PF3D7_0932900 ← / → PF3D7_0933000 | conserved Plasmodium protein, unknown function/CSTF domain‑containing protein, putative |
| NC_004330 | 1,324,860 | T→A | ? | 100% | intergenic (+161/+388) | PF3D7_0933400 → / ← PF3D7_0933500 | conserved Plasmodium protein, unknown function/gamma‑tubulin complex component, putative |
| NC_004330 | 1,352,638 | C→T | ? | 100% | intergenic (‑709/‑1943) | PF3D7_0934500 ← / → PF3D7_0934600 | V‑type proton ATPase subunit E, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,352,658 | C→T | ? | 100% | intergenic (‑729/‑1923) | PF3D7_0934500 ← / → PF3D7_0934600 | V‑type proton ATPase subunit E, putative/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,364,081 | C→T | ? | 100% | intergenic (+233/+175) | PF3D7_0934800 → / ← PF3D7_0934900 | cAMP‑dependent protein kinase catalytic subunit/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,364,084 | A→T | ? | 100% | intergenic (+236/+172) | PF3D7_0934800 → / ← PF3D7_0934900 | cAMP‑dependent protein kinase catalytic subunit/conserved Plasmodium protein, unknown function |
| NC_004330 | 1,376,975 | G→T | ? | 100% | noncoding (4508/4508 nt) | PF3D7_0935390 ← | gdv1 antisense RNA |
| NC_004330 | 1,376,983 | G→T | ? | 100% | noncoding (4500/4508 nt) | PF3D7_0935390 ← | gdv1 antisense RNA |
| NC_004330 | 1,379,780 | T→A | ? | 100% | noncoding (1703/4508 nt) | PF3D7_0935390 ← | gdv1 antisense RNA |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004330 | 1,390,423 | Δ2 bp | ? | 100% | intergenic (‑8941/‑10376) | PF3D7_0935390 ← / → PF3D7_0935500 | gdv1 antisense RNA/Plasmodium exported protein, unknown function |
| NC_004330 | 1,407,325 | Δ2 bp | ? | 100% | intergenic (+303/‑1873) | PF3D7_0935600 → / → PF3D7_0935700 | gametocytogenesis‑implicated protein/Plasmodium exported protein, unknown function |
| NC_004330 | 1,441,001 | 9,400 bp x 2 | 100% | duplication | PF3D7_0936400–PF3D7_0936600 | PF3D7_0936400, PF3D7_0936500, PF3D7_0936500, PF3D7_0936600, PF3D7_0936600 | |
| NC_004330 | 1,452,060 | Δ2 bp | ? | 100% | intergenic (+4113/‑2361) | PF3D7_0936600 → / → PF3D7_0936700 | Plasmodium exported protein (PHISTc), unknown function/lysophospholipase, putative |
| NC_004330 | 1,454,301 | 25,000 bp x 3 | 100% | amplification | PF3D7_0936700–PF3D7_0937400 | PF3D7_0936700, PF3D7_0936800, PF3D7_0936800, PF3D7_0937000, PF3D7_0937000, PF3D7_0937100, PF3D7_0937100, PF3D7_0937200, PF3D7_0937300, PF3D7_0937300, PF3D7_0937400, PF3D7_0937400 | |
| NC_004330 | 1,480,901 | 9,200 bp x 4 | 100% | amplification | PF3D7_0937500–[PF3D7_0937600] | PF3D7_0937500, PF3D7_0937500, PF3D7_0937600, [PF3D7_0937600] | |
| NC_004330 | 1,492,601 | 1,000 bp x 9 | 100% | amplification | [PF3D7_0937700] | [PF3D7_0937700] | |
| NC_004330 | 1,495,601 | 46,200 bp x 34 | 100% | amplification | [PF3D7_0937800]–PF3D7_0937800 | [PF3D7_0937800], PF3D7_0937800 | |
| NC_004330 | 1,524,351 | A→G | 100% | 100% | intergenic (‑21015/–) | PF3D7_0937800 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| NC_004331 | 1 | 28,800 bp x 14 | 100% | amplification | PF3D7_1300100–PF3D7_1300100 | PF3D7_1300100, PF3D7_1300100 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 79 | Δ1 bp | ? | 100% | intergenic (–/‑21285) | – / → PF3D7_1300100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_004331 | 34,001 | 79,800 bp x 3 | 100% | amplification | [PF3D7_1300300]–[PF3D7_1302000] | 28 genes [PF3D7_1300300], PF3D7_1300300, PF3D7_1300400, PF3D7_1300400, PF3D7_1300500, PF3D7_1300500, PF3D7_1300600, PF3D7_1300600, PF3D7_1300700, PF3D7_1300700, PF3D7_1300900, PF3D7_1300900, PF3D7_1301200, PF3D7_1301200, PF3D7_1301400, PF3D7_1301400, PF3D7_1301500, PF3D7_1301500, PF3D7_1301600, PF3D7_1301600, PF3D7_1301600, PF3D7_1301600, PF3D7_1301700, PF3D7_1301700, PF3D7_1301900, PF3D7_1301900, PF3D7_1302000, [PF3D7_1302000] |
|
| NC_004331 | 45,718 | T→A | ? | 100% | intergenic (‑976/‑1865) | PF3D7_1300300 ← / → PF3D7_1300400 | erythrocyte membrane protein 1, PfEMP1/rifin |
| NC_004331 | 95,743 | Δ1 bp | ? | 100% | intergenic (‑2391/‑3805) | PF3D7_1301600 ← / → PF3D7_1301700 | erythrocyte binding antigen‑140/CX3CL1‑binding protein 2 |
| NC_004331 | 106,926 | +T | 100% | intergenic (+6405/+2769) | PF3D7_1301700 → / ← PF3D7_1301900 | CX3CL1‑binding protein 2/Plasmodium exported protein, unknown function | |
| NC_004331 | 121,301 | 121,300 bp x 3 | 100% | amplification | PF3D7_1302100–PF3D7_1304700 | 75 genes PF3D7_1302100, PF3D7_1302200, PF3D7_1302300, PF3D7_1302300, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302400, PF3D7_1302500, PF3D7_1302500, PF3D7_1302500, PF3D7_1302500, PF3D7_1302600, PF3D7_1302700, PF3D7_1302700, PF3D7_1302700, PF3D7_1302800, PF3D7_1302800, PF3D7_1302900, PF3D7_1303000, PF3D7_1303000, PF3D7_1303000, PF3D7_1303100, PF3D7_1303100, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303200.1, PF3D7_1303300, PF3D7_1303400, PF3D7_1303500, PF3D7_1303500, PF3D7_1303600, PF3D7_1303600, PF3D7_1303700, PF3D7_1303700, PF3D7_1303700, PF3D7_1303700, PF3D7_1303700, PF3D7_1303700, PF3D7_1303800, PF3D7_1303900, PF3D7_1303900, PF3D7_1303900, PF3D7_1303900, PF3D7_1303900, PF3D7_1304000, PF3D7_1304000, PF3D7_1304000, PF3D7_1304000, PF3D7_1304100, PF3D7_1304100, PF3D7_1304200.1, PF3D7_1304200.1, PF3D7_1304200.1, PF3D7_1304200.1, PF3D7_1304200.1, PF3D7_1304300, PF3D7_1304400, PF3D7_1304400, PF3D7_1304500, PF3D7_1304600, PF3D7_1304700, PF3D7_1304700, PF3D7_1304700 |
|
| NC_004331 | 200,622 | Δ24 bp | 100% | coding (12016‑12039/27816 nt) | PF3D7_1303800 ← | conserved Plasmodium protein, unknown function | |
| NC_004331 | 230,738 | C→T | ? | 100% | intergenic (‑1865/‑345) | PF3D7_1304200.1 ← / → PF3D7_1304300 | CorA‑like Mg2+ transporter protein, putative/conserved Plasmodium protein, unknown function |
| NC_004331 | 241,479 | A→T | ? | 100% | intergenic (+246/‑178) | PF3D7_1304600 → / → PF3D7_1304700 | conserved Plasmodium protein, unknown function/cyclin |
| NC_004331 | 247,701 | 257,400 bp x 3 | 100% | amplification | [PF3D7_1305000]–PF3D7_1311800 | 125 genes [PF3D7_1305000], PF3D7_1305100, PF3D7_1305200, PF3D7_1305300, PF3D7_1305300, PF3D7_1305400, PF3D7_1305400, PF3D7_1305500, PF3D7_1305600, PF3D7_1305600, PF3D7_1305700, PF3D7_1305800, PF3D7_1305900, PF3D7_1305900, PF3D7_1306000, PF3D7_1306100, PF3D7_1306200, PF3D7_1306300, PF3D7_1306300, PF3D7_1306300, PF3D7_1306300, PF3D7_1306300, PF3D7_1306300, PF3D7_1306300, PF3D7_1306400, PF3D7_1306500, PF3D7_1306600, PF3D7_1306600, PF3D7_1306600, PF3D7_1306700, PF3D7_1306700, PF3D7_1306700, PF3D7_1306700, PF3D7_1306800, PF3D7_1306900, PF3D7_1306900, PF3D7_1307000, PF3D7_1307000, PF3D7_1307000, PF3D7_1307100, PF3D7_1307200, PF3D7_1307300, PF3D7_1307400, PF3D7_1307400, PF3D7_1307500, PF3D7_1307600, PF3D7_1307600, PF3D7_1307700, PF3D7_1307800, PF3D7_1307800, PF3D7_1307800, PF3D7_1307900, PF3D7_1307900, PF3D7_1308000, PF3D7_1308100, PF3D7_1308200, PF3D7_1308200, PF3D7_1308300, PF3D7_1308300, PF3D7_1308400, PF3D7_1308400, PF3D7_1308500, PF3D7_1308600, PF3D7_1308700, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308800, PF3D7_1308900, PF3D7_1309000, PF3D7_1309100, PF3D7_1309100, PF3D7_1309120, PF3D7_1309100, PF3D7_1309200, PF3D7_1309200, PF3D7_1309200, PF3D7_1309300, PF3D7_1309400, PF3D7_1309500, PF3D7_1309600, PF3D7_1309700, PF3D7_1309800, PF3D7_1309800, PF3D7_1309900, PF3D7_1310000, PF3D7_1310100, PF3D7_1310200, PF3D7_1310200, PF3D7_1310300, PF3D7_1310400, PF3D7_1310500, PF3D7_1310600, PF3D7_1310600, PF3D7_1310600, PF3D7_1310600, PF3D7_1310600, PF3D7_1310600, PF3D7_1310700, PF3D7_1310800, PF3D7_1310800, PF3D7_1310800, PF3D7_1310900, PF3D7_1311000, PF3D7_1311000, PF3D7_1311100, PF3D7_1311200, PF3D7_1311300, PF3D7_1311300, PF3D7_1311300, PF3D7_1311400, PF3D7_1311500, PF3D7_1311500, PF3D7_1311600, PF3D7_1311700, PF3D7_1311800 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 269,078 | T→A | ? | 100% | intergenic (‑19/+105) | PF3D7_1305400 ← / ← PF3D7_1305400 | AAR2 protein, putative/AAR2 protein, putative |
| NC_004331 | 396,430 | C→A | ? | 100% | intergenic (‑1494/+304) | PF3D7_1308500 ← / ← PF3D7_1308600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 439,796 | C→T | ? | 100% | intergenic (+420/‑469) | PF3D7_1309600 → / → PF3D7_1309700 | ribosomal RNA methyltransferase, putative/vacuolar protein sorting‑associated protein 18, putative |
| NC_004331 | 507,601 | 207,300 bp x 2 | 100% | duplication | PF3D7_1311900–[PF3D7_1317100] | 131 genes PF3D7_1311900, PF3D7_1312000, PF3D7_1312100, PF3D7_1312100, PF3D7_1312200, PF3D7_1312200, PF3D7_1312200, PF3D7_1312300, PF3D7_1312400, PF3D7_1312450, PF3D7_1312500, PF3D7_1312600, PF3D7_1312700, PF3D7_1312800, PF3D7_1312800, PF3D7_1312900, PF3D7_1312900, PF3D7_1312900, PF3D7_1313000, PF3D7_1313000, PF3D7_1313100, PF3D7_1313100, PF3D7_1313200, PF3D7_1313300, PF3D7_1313300, PF3D7_1313300, PF3D7_1313400, PF3D7_1313500, PF3D7_1313500, PF3D7_1313600, PF3D7_1313700, PF3D7_1313800, PF3D7_1313800, PF3D7_1313900, PF3D7_1314000, PF3D7_1314100, PF3D7_1314200, PF3D7_1314300, PF3D7_1314400, PF3D7_1314400, PF3D7_1314500, PF3D7_1314500, PF3D7_1314500, PF3D7_1314500, PF3D7_1314600, PF3D7_1314700, PF3D7_1314700, PF3D7_1314700, PF3D7_1314700, PF3D7_1314800, PF3D7_1314800, PF3D7_1314900, PF3D7_1314900, PF3D7_1314900, PF3D7_1314900, PF3D7_1314900, PF3D7_1315000, PF3D7_1315000, PF3D7_1315100, PF3D7_1315200, PF3D7_1315300, PF3D7_1315300, PF3D7_1315400, PF3D7_1315400, PF3D7_1315400, PF3D7_1315400, PF3D7_1315400, PF3D7_1315500, PF3D7_1315500, PF3D7_1315500, PF3D7_1315500, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315600, PF3D7_1315700, PF3D7_1315800, PF3D7_1315900, PF3D7_1315900, PF3D7_1315900, PF3D7_1315900, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316000, PF3D7_1316100, PF3D7_1316200, PF3D7_1316200, PF3D7_1316300, PF3D7_1316300, PF3D7_1316300, PF3D7_1316300, PF3D7_1316300, PF3D7_1316400, PF3D7_1316400, PF3D7_1316400, PF3D7_1316400, PF3D7_1316400, PF3D7_1316400, PF3D7_1316400, PF3D7_1316500, PF3D7_1316600, PF3D7_1316600, PF3D7_1316600, PF3D7_1316700, PF3D7_1316700, PF3D7_1316700, PF3D7_1316800, PF3D7_1316800, PF3D7_1316800, PF3D7_1316800, PF3D7_1316800, PF3D7_1316800, PF3D7_1316800, PF3D7_1316900, PF3D7_1317000, [PF3D7_1317100] |
|
| NC_004331 | 548,456 | Δ2 bp | ? | 100% | intergenic (‑3933/‑129) | PF3D7_1312800 ← / → PF3D7_1312900 | conserved Plasmodium protein, unknown function/eukaryotic translation initation factor 4 gamma |
| NC_004331 | 600,418 | Δ1 bp | ? | 100% | intergenic (‑1220/+248) | PF3D7_1313800 ← / ← PF3D7_1313900 | conserved Plasmodium membrane protein, unknown function/ankyrin‑repeat protein, putative |
| NC_004331 | 621,108 | Δ2 bp | ? | 100% | intergenic (‑583/+278) | PF3D7_1314300 ← / ← PF3D7_1314400 | MACRO domain‑containing protein, putative/conserved protein, unknown function |
| NC_004331 | 649,860 | C→T | ? | 100% | intergenic (‑598/+180) | PF3D7_1315400 ← / ← PF3D7_1315400 | zinc finger (CCCH type) protein, putative/zinc finger (CCCH type) protein, putative |
| NC_004331 | 649,866 | C→T | ? | 100% | intergenic (‑604/+174) | PF3D7_1315400 ← / ← PF3D7_1315400 | zinc finger (CCCH type) protein, putative/zinc finger (CCCH type) protein, putative |
| NC_004331 | 667,495 | Δ2 bp | 100% | intergenic (+95/‑71) | PF3D7_1315900 → / → PF3D7_1315900 | exportin‑T, putative/exportin‑T, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 690,703 | A→T | ? | 100% | intergenic (+2032/‑311) | PF3D7_1316500 → / → PF3D7_1316600 | pre‑mRNA‑processing factor 40, putative/choline‑phosphate cytidylyltransferase |
| NC_004331 | 690,708 | G→T | ? | 100% | intergenic (+2037/‑306) | PF3D7_1316500 → / → PF3D7_1316600 | pre‑mRNA‑processing factor 40, putative/choline‑phosphate cytidylyltransferase |
| NC_004331 | 717,242 | Δ2 bp | ? | 100% | intergenic (+2281/‑4718) | PF3D7_1317100 → / → PF3D7_1317200 | DNA replication licensing factor MCM4/AP2 domain transcription factor AP2‑FG, putative |
| NC_004331 | 721,901 | 54,900 bp x 3 | 100% | amplification | PF3D7_1317200–PF3D7_1318800 | 36 genes PF3D7_1317200, PF3D7_1317300, PF3D7_1317300, PF3D7_1317300, PF3D7_1317300, PF3D7_1317300, PF3D7_1317400, PF3D7_1317500, PF3D7_1317600, PF3D7_1317600, PF3D7_1317600, PF3D7_1317600, PF3D7_1317600, PF3D7_1317600, PF3D7_1317600, PF3D7_1317700, PF3D7_1317800, PF3D7_1317800, PF3D7_1317900, PF3D7_1318000, PF3D7_1318100, PF3D7_1318200, PF3D7_1318300, PF3D7_1318400, PF3D7_1318400, PF3D7_1318500, PF3D7_1318500, PF3D7_1318500, PF3D7_1318500, PF3D7_1318500, PF3D7_1318500, PF3D7_1318500, PF3D7_1318500, PF3D7_1318600, PF3D7_1318700, PF3D7_1318800 |
|
| NC_004331 | 779,901 | 7,100 bp x 3 | 100% | amplification | PF3D7_1318900–PF3D7_1319000 | PF3D7_1318900, PF3D7_1319000 | |
| NC_004331 | 789,277 | C→T | ? | 100% | intergenic (+2285/‑160) | PF3D7_1319000 → / → PF3D7_1319100 | conserved Plasmodium protein, unknown function/ubiquitin carboxyl‑terminal hydrolase MINDY, putative |
| NC_004331 | 789,601 | 176,500 bp x 3 | 100% | amplification | [PF3D7_1319100]–PF3D7_1323100 | 144 genes [PF3D7_1319100], PF3D7_1319200, PF3D7_1319300, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319400, PF3D7_1319500, PF3D7_1319600, PF3D7_1319700, PF3D7_1319800, PF3D7_1319900, PF3D7_1320000, PF3D7_1320100, PF3D7_1320100, PF3D7_1320100, PF3D7_1320100, PF3D7_1320100, PF3D7_1320200, PF3D7_1320300, PF3D7_1320400, PF3D7_1320500, PF3D7_1320500, PF3D7_1320500, PF3D7_1320500, PF3D7_1320500, PF3D7_1320500, PF3D7_1320600, PF3D7_1320600, PF3D7_1320600, PF3D7_1320600, PF3D7_1320600, PF3D7_1320700, PF3D7_1320800, PF3D7_1320800, PF3D7_1320800, PF3D7_1320900, PF3D7_1320900, PF3D7_1320900, PF3D7_1320900, PF3D7_1321000, PF3D7_1321100, PF3D7_1321100, PF3D7_1321100, PF3D7_1321100, PF3D7_1321200, PF3D7_1321200, PF3D7_1321200, PF3D7_1321300, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321400, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321500.1, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321600, PF3D7_1321700, PF3D7_1321700, PF3D7_1321800, PF3D7_1321800, PF3D7_1321800, PF3D7_1321800, PF3D7_1321900, PF3D7_1322000, PF3D7_1322000, PF3D7_1322000, PF3D7_1322000, PF3D7_1322100, PF3D7_1322100, PF3D7_1322100, PF3D7_1322100, PF3D7_1322100, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322200, PF3D7_1322300, PF3D7_1322300, PF3D7_1322300, PF3D7_1322300, PF3D7_1322400, PF3D7_1322400, PF3D7_1322400, PF3D7_1322500, PF3D7_1322500, PF3D7_1322500, PF3D7_1322500, PF3D7_1322500, PF3D7_1322500, PF3D7_1322600, PF3D7_1322700, PF3D7_1322800, PF3D7_1322800, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1322900, PF3D7_1323000, PF3D7_1323000, PF3D7_1323100 |
|
| NC_004331 | 846,683 | T→A | ? | 100% | intergenic (+1572/‑407) | PF3D7_1320500 → / → PF3D7_1320600 | SNARE protein, putative/ras‑related protein Rab‑11A |
| NC_004331 | 874,678 | C→T | ? | 100% | intergenic (‑2346/‑587) | PF3D7_1321100 ← / → PF3D7_1321200 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| NC_004331 | 927,170 | C→A | 100% | 100% | S2067* (TCA→TAA) | PF3D7_1322100 → | histone‑lysine N‑methyltransferase SET2 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 952,509 | G→A | ? | 100% | intergenic (+30/‑645) | PF3D7_1322400 → / → PF3D7_1322500 | conserved Plasmodium protein, unknown function/palmitoyltransferase DHHC5 |
| NC_004331 | 957,614 | +ATAT | 100% | intergenic (‑119/+605) | PF3D7_1322600 ← / ← PF3D7_1322700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 965,475 | C→T | ? | 100% | intergenic (‑785/+11) | PF3D7_1323000 ← / ← PF3D7_1323100 | beta‑hydroxyacyl‑ACP dehydratase/60S ribosomal protein L6, putative |
| NC_004331 | 965,479 | A→T | ? | 100% | intergenic (‑789/+7) | PF3D7_1323000 ← / ← PF3D7_1323100 | beta‑hydroxyacyl‑ACP dehydratase/60S ribosomal protein L6, putative |
| NC_004331 | 969,601 | 174,300 bp x 3 | 100% | amplification | PF3D7_1323300–[PF3D7_1327200] | 111 genes PF3D7_1323300, PF3D7_1323400, PF3D7_1323400, PF3D7_1323400, PF3D7_1323400, PF3D7_1323500, PF3D7_1323600, PF3D7_1323700, PF3D7_1323700, PF3D7_1323700, PF3D7_1323800, PF3D7_1323900, PF3D7_1324000, PF3D7_1324100, PF3D7_1324200, PF3D7_1324200, PF3D7_1324200, PF3D7_1324300, PF3D7_1324300, PF3D7_1324300, PF3D7_1324400, PF3D7_1324400, PF3D7_1324400, PF3D7_1324400, PF3D7_1324400, PF3D7_1324500, PF3D7_1324500, PF3D7_1324500, PF3D7_1324500, PF3D7_1324500, PF3D7_1324500, PF3D7_1324500, PF3D7_1324500, PF3D7_1324600, PF3D7_1324600, PF3D7_1324700, PF3D7_1324700, PF3D7_1324800, PF3D7_1324800, PF3D7_1324800, PF3D7_1324800, PF3D7_1324900, PF3D7_1325000, PF3D7_1325100, PF3D7_1325200, PF3D7_1325200, PF3D7_1325200, PF3D7_1325300, PF3D7_1325400, PF3D7_1325500, PF3D7_1325500, PF3D7_1325500, PF3D7_1325500, PF3D7_1325500, PF3D7_1325600, PF3D7_1325600, PF3D7_1325700, PF3D7_1325700, PF3D7_1325700, PF3D7_1325800, PF3D7_1325900, PF3D7_1325900, PF3D7_1326000, PF3D7_1326000, PF3D7_1326000, PF3D7_1326000, PF3D7_1326100, PF3D7_1326100, PF3D7_1326100, PF3D7_1326100, PF3D7_1326200, PF3D7_1326200, PF3D7_1326200, PF3D7_1326300, PF3D7_1326300, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326400, PF3D7_1326500, PF3D7_1326600, PF3D7_1326600, PF3D7_1326700, PF3D7_1326800, PF3D7_1326900, PF3D7_1327000, PF3D7_1327000, PF3D7_1327000, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, PF3D7_1327100, [PF3D7_1327200] |
|
| NC_004331 | 982,979 | Δ2 bp | ? | 100% | intergenic (+55/‑70) | PF3D7_1323700 → / → PF3D7_1323700 | glideosome associated protein with multiple membrane spans 1/glideosome associated protein with multiple membrane spans 1 |
| NC_004331 | 1,021,103 | T→A | 100% | 100% | intergenic (‑1800/‑406) | PF3D7_1324300 ← / → PF3D7_1324400 | conserved Plasmodium membrane protein, unknown function/PRELI domain‑containing protein, putative |
| NC_004331 | 1,066,331 | C→T | ? | 100% | intergenic (+132/‑14) | PF3D7_1325500 → / → PF3D7_1325500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,085,259 | Δ4 bp | ? | 100% | intergenic (‑672/+524) | PF3D7_1325900 ← / ← PF3D7_1326000 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,106,425 | C→T | ? | 100% | intergenic (‑589/‑1450) | PF3D7_1326500 ← / → PF3D7_1326600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 1,112,253 | G→A | 100% | 100% | C1460Y (TGT→TAT) | PF3D7_1326600 → | conserved Plasmodium protein, unknown function |
| NC_004331 | 1,145,901 | 18,500 bp x 3 | 100% | amplification | [PF3D7_1327300]–PF3D7_1327800 | [PF3D7_1327300], PF3D7_1327400, PF3D7_1327500, PF3D7_1327500, PF3D7_1327500, PF3D7_1327600, PF3D7_1327700, PF3D7_1327800 | |
| NC_004331 | 1,174,101 | 72,000 bp x 3 | 100% | amplification | PF3D7_1328000–[PF3D7_1329400] | 42 genes PF3D7_1328000, PF3D7_1328100, PF3D7_1328200, PF3D7_1328200, PF3D7_1328200, PF3D7_1328200, PF3D7_1328300, PF3D7_1328300, PF3D7_1328300, PF3D7_1328400, PF3D7_1328500, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328600, PF3D7_1328700, PF3D7_1328800, PF3D7_1328900, PF3D7_1329000, PF3D7_1329000, PF3D7_1329000, PF3D7_1329000, PF3D7_1329000, PF3D7_1329100, PF3D7_1329100, PF3D7_1329100, PF3D7_1329100, PF3D7_1329200, PF3D7_1329200, PF3D7_1329300, PF3D7_1329400, PF3D7_1329400, PF3D7_1329400, PF3D7_1329400, PF3D7_1329400, PF3D7_1329400, [PF3D7_1329400] |
|
| NC_004331 | 1,210,409 | Δ2 bp | 100% | intergenic (‑49/+67) | PF3D7_1328600 ← / ← PF3D7_1328600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 1,226,314 | Δ2 bp | ? | 100% | intergenic (‑779/+1057) | PF3D7_1329000 ← / ← PF3D7_1329100 | DNA‑directed RNA polymerase III subunit RPC1, putative/myosin F, putative |
| NC_004331 | 1,233,926 | T→A | ? | 100% | intergenic (‑54/+221) | PF3D7_1329100 ← / ← PF3D7_1329100 | myosin F, putative/myosin F, putative |
| NC_004331 | 1,239,247 | Δ2 bp | ? | 100% | intergenic (‑818/+238) | PF3D7_1329200 ← / ← PF3D7_1329300 | conserved Plasmodium protein, unknown function/chromatin assembly factor 1 subunit B, putative |
| NC_004331 | 1,252,401 | 377,100 bp x 3 | 100% | amplification | [PF3D7_1329500]–PF3D7_1340900 | 270 genes [PF3D7_1329500], PF3D7_1329500, PF3D7_1329500, PF3D7_1329600, PF3D7_1329700, PF3D7_1329800, PF3D7_1329900, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330000.1, PF3D7_1330100, PF3D7_1330200, PF3D7_1330200, PF3D7_1330300, PF3D7_1330300, PF3D7_1330300, PF3D7_1330300, PF3D7_1330300, PF3D7_1330300, PF3D7_1330400.1, PF3D7_1330400.1, PF3D7_1330400.1, PF3D7_1330400.1, PF3D7_1330400.1, PF3D7_1330500, PF3D7_1330600, PF3D7_1330700, PF3D7_1330700, PF3D7_1330700, PF3D7_1330700, PF3D7_1330700, PF3D7_1330700, PF3D7_1330700, PF3D7_1330700, PF3D7_1330800, PF3D7_1330900, PF3D7_1330800, PF3D7_1331000, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331100, PF3D7_1331200, PF3D7_1331200, PF3D7_1331300, PF3D7_1331300, PF3D7_1331400, PF3D7_1331500, PF3D7_1331600, PF3D7_1331600, PF3D7_1331600, PF3D7_1331600, PF3D7_1331700, PF3D7_1331800, PF3D7_1331900, PF3D7_1331800, PF3D7_1332000, PF3D7_1332000, PF3D7_1332000, PF3D7_1332000, PF3D7_1332000, PF3D7_1332100, PF3D7_1332200, PF3D7_1332200, PF3D7_1332200, PF3D7_1332300, PF3D7_1332400, PF3D7_1332500, PF3D7_1332600, PF3D7_1332700, PF3D7_1332800, PF3D7_1332900, PF3D7_1333000, PF3D7_1333000, PF3D7_1333000, PF3D7_1333000, PF3D7_1333000, PF3D7_1333000, PF3D7_1333100, PF3D7_1333200, PF3D7_1333300, PF3D7_1333400, PF3D7_1333500, PF3D7_1333600, PF3D7_1333700, PF3D7_1333800, PF3D7_1333900, PF3D7_1333900, PF3D7_1334000, PF3D7_1334100, PF3D7_1334200, PF3D7_1334300, PF3D7_1334400, PF3D7_1334500, PF3D7_1334600, PF3D7_1334700, PF3D7_1334800, PF3D7_1335000, PF3D7_1335100, PF3D7_1335300, PF3D7_1335300, PF3D7_1335400, PF3D7_1335400, PF3D7_1335500, PF3D7_1335500, PF3D7_1335500, PF3D7_1335600, PF3D7_1335600, PF3D7_1335700, PF3D7_1335700, PF3D7_1335700, PF3D7_1335800, PF3D7_1335900, PF3D7_1336000, PF3D7_1336000, PF3D7_1336000, PF3D7_1336100, PF3D7_1336100, PF3D7_1336100, PF3D7_1336200, PF3D7_1336200, PF3D7_1336200, PF3D7_1336200, PF3D7_1336200, PF3D7_1336300, PF3D7_1336400, PF3D7_1336400, PF3D7_1336400, PF3D7_1336400, PF3D7_1336400, PF3D7_1336400, PF3D7_1336400, PF3D7_1336500, PF3D7_1336400, PF3D7_1336400, PF3D7_1336600, PF3D7_1336600, PF3D7_1336600, PF3D7_1336600, PF3D7_1336700, PF3D7_1336800, PF3D7_1336900, PF3D7_1336900, PF3D7_1337000, PF3D7_1337000, PF3D7_1337100, PF3D7_1337100, PF3D7_1337100, PF3D7_1337100, PF3D7_1337100, PF3D7_1337100, PF3D7_1337100, PF3D7_1337100, PF3D7_1337200, PF3D7_1337300, PF3D7_1337300, PF3D7_1337400, PF3D7_1337400, PF3D7_1337400, PF3D7_1337500, PF3D7_1337600, PF3D7_1337700, PF3D7_1337700, PF3D7_1337700, PF3D7_1337700, PF3D7_1337800, PF3D7_1337900, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338000, PF3D7_1338100, PF3D7_1338100, PF3D7_1338200, PF3D7_1338300, PF3D7_1338300, PF3D7_1338400, PF3D7_1338400, PF3D7_1338400, PF3D7_1338400, PF3D7_1338400, PF3D7_1338400, PF3D7_1338400, PF3D7_1338400, PF3D7_1338500, PF3D7_1338600, PF3D7_1338600, PF3D7_1338600, PF3D7_1338700, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338800, PF3D7_1338900, PF3D7_1339000, PF3D7_1339000, PF3D7_1339000, PF3D7_1339000, PF3D7_1339100, PF3D7_1339200, PF3D7_1339300, PF3D7_1339400, PF3D7_1339400, PF3D7_1339500, PF3D7_1339500, PF3D7_1339500, PF3D7_1339500, PF3D7_1339600, PF3D7_1339600, PF3D7_1339700, PF3D7_1339800, PF3D7_1339900, PF3D7_1340000, PF3D7_1340100, PF3D7_1340200, PF3D7_1340300, PF3D7_1340400, PF3D7_1340400, PF3D7_1340500, PF3D7_1340600, PF3D7_1340700, PF3D7_1340700, PF3D7_1340700, PF3D7_1340700, PF3D7_1340700, PF3D7_1340800, PF3D7_1340800, PF3D7_1340900, PF3D7_1340900 |
|
| NC_004331 | 1,275,034 | +AT | 100% | intergenic (+26/‑70) | PF3D7_1330100 → / → PF3D7_1330200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 1,287,526 | G→A | ? | 100% | intergenic (+361/+365) | PF3D7_1330500 → / ← PF3D7_1330600 | CTLH domain‑containing protein, putative/elongation factor Tu, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 1,317,920 | C→T | ? | 100% | intergenic (‑114/+1169) | PF3D7_1331600 ← / ← PF3D7_1331700 | protein tyrosine phosphatase‑like protein, putative/glutamine‑‑tRNA ligase, putative |
| NC_004331 | 1,340,764 | G→T | 100% | intergenic (‑1071/‑22) | PF3D7_1332400 ← / → PF3D7_1332500 | nucleotidyltransferase, putative/SAM‑dependent RNA methyltransferase, putative | |
| NC_004331 | 1,371,664 | (T)22→21 | 100% | intergenic (+865/‑7) | PF3D7_1333400 → / → PF3D7_1333500 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 1,384,876 | G→T | 100% | intergenic (+1541/‑182) | PF3D7_1333800 → / → PF3D7_1333900 | Voldacs domain‑containing protein, putative/conserved Plasmodium protein, unknown function | |
| NC_004331 | 1,407,646 | Δ4 bp | ? | 100% | intergenic (‑134/+1400) | PF3D7_1334500 ← / ← PF3D7_1334600 | MSP7‑like protein/MSP7‑like protein |
| NC_004331 | 1,450,573 | Δ1 bp | ? | 100% | intergenic (+188/‑916) | PF3D7_1335400 → / → PF3D7_1335500 | reticulocyte binding protein 2 homologue a/DNA replication complex GINS protein, putative |
| NC_004331 | 1,501,682 | +TTTTTT | ? | 100% | intergenic (+188/‑1333) | PF3D7_1337200 → / → PF3D7_1337300 | 1‑deoxy‑D‑xylulose 5‑phosphate synthase/exoribonuclease, putative |
| NC_004331 | 1,532,216 | Δ4 bp | ? | 100% | intergenic (‑2008/‑2288) | PF3D7_1337800 ← / → PF3D7_1337900 | calcium‑dependent protein kinase 5/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,534,230 | +TATT | ? | 100% | intergenic (‑4022/‑277) | PF3D7_1337800 ← / → PF3D7_1337900 | calcium‑dependent protein kinase 5/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,541,315 | G→A | ? | 100% | intergenic (+962/‑765) | PF3D7_1338000 → / → PF3D7_1338100 | LMBR1 domain‑containing protein, putative/26S proteasome regulatory subunit RPN3, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 1,561,127 | G→A | ? | 100% | intergenic (‑1393/+128) | PF3D7_1338600 ← / ← PF3D7_1338700 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004331 | 1,581,128 | C→A | ? | 100% | intergenic (‑4131/‑2098) | PF3D7_1339200 ← / → PF3D7_1339300 | tRNA‑Pro/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,612,874 | Δ1 bp | 100% | intergenic (‑885/+323) | PF3D7_1340400 ← / ← PF3D7_1340500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 1,613,128 | Δ1 bp | ? | 100% | intergenic (‑1139/+69) | PF3D7_1340400 ← / ← PF3D7_1340500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,636,801 | 254,300 bp x 3 | 100% | amplification | PF3D7_1341300–[PF3D7_1347200] | 128 genes PF3D7_1341300, PF3D7_1341400, PF3D7_1341300, PF3D7_1341500, PF3D7_1341600, PF3D7_1341700, PF3D7_1341700, PF3D7_1341700, PF3D7_1341800, PF3D7_1341900, PF3D7_1341900, PF3D7_1341900, PF3D7_1341900, PF3D7_1341900, PF3D7_1341900, PF3D7_1341900, PF3D7_1342000, PF3D7_1342100, PF3D7_1342200, PF3D7_1342300, PF3D7_1342400, PF3D7_1342400, PF3D7_1342500, PF3D7_1342500, PF3D7_1342500, PF3D7_1342500, PF3D7_1342500, PF3D7_1342600, PF3D7_1342600, PF3D7_1342600, PF3D7_1342700, PF3D7_1342700, PF3D7_1342700, PF3D7_1342800, PF3D7_1342900, PF3D7_1343000, PF3D7_1343000, PF3D7_1343000, PF3D7_1343000, PF3D7_1343100, PF3D7_1343200, PF3D7_1343300, PF3D7_1343400, PF3D7_1343400, PF3D7_1343400, PF3D7_1343500, PF3D7_1343500, PF3D7_1343500, PF3D7_1343500, PF3D7_1343600, PF3D7_1343700, PF3D7_1343800, PF3D7_1343900, PF3D7_1344000, PF3D7_1344100, PF3D7_1344200, PF3D7_1344300, PF3D7_1344300, PF3D7_1344300, PF3D7_1344400, PF3D7_1344500, PF3D7_1344500, PF3D7_1344500, PF3D7_1344600, PF3D7_1344700, PF3D7_1344800, PF3D7_1344800, PF3D7_1344800, PF3D7_1344900, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345000, PF3D7_1345100, PF3D7_1345100, PF3D7_1345100, PF3D7_1345100, PF3D7_1345200, PF3D7_1345300, PF3D7_1345300, PF3D7_1345300, PF3D7_1345400, PF3D7_1345400, PF3D7_1345400, PF3D7_1345400, PF3D7_1345500, PF3D7_1345600, PF3D7_1345600, PF3D7_1345700, PF3D7_1345800, PF3D7_1345800, PF3D7_1345900, PF3D7_1345900, PF3D7_1345900, PF3D7_1345900, PF3D7_1345900, PF3D7_1345900, PF3D7_1345900, PF3D7_1346000, PF3D7_1346000, PF3D7_1346100, PF3D7_1346100, PF3D7_1346200, PF3D7_1346300, PF3D7_1346300, PF3D7_1346300, PF3D7_1346400, PF3D7_1346500, PF3D7_1346600, PF3D7_1346700, PF3D7_1346800, PF3D7_1346900, PF3D7_1347000, PF3D7_1347000, PF3D7_1347000, PF3D7_1347000, PF3D7_1347000, PF3D7_1347000, PF3D7_1347000, PF3D7_1347100, [PF3D7_1347200] |
|
| NC_004331 | 1,710,719 | C→T | ? | 100% | intergenic (‑40/‑3724) | PF3D7_1343300 ← / → PF3D7_1343400 | CDT1‑like protein, putative/DNA repair protein RAD5, putative |
| NC_004331 | 1,783,500 | A→T | ? | 100% | intergenic (‑4458/+1833) | PF3D7_1344300 ← / ← PF3D7_1344400 | zinc finger protein, putative/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,790,765 | G→A | ? | 100% | intergenic (+93/+267) | PF3D7_1344600 → / ← PF3D7_1344700 | lipoyl synthase/conserved Plasmodium protein, unknown function |
| NC_004331 | 1,837,227 | G→A | ? | 100% | intergenic (‑428/+525) | PF3D7_1345900 ← / ← PF3D7_1346000 | kinetochore protein SPC25, putative/dynactin subunit 2, putative |
| NC_004331 | 1,895,266 | +A | ? | 100% | intergenic (‑243/‑717) | PF3D7_1347300 ← / → PF3D7_1347400 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 1,903,048 | C→T | ? | 100% | intergenic (+271/‑12) | PF3D7_1347600 → / → PF3D7_1347600 | conserved protein, unknown function/conserved protein, unknown function |
| NC_004331 | 1,908,901 | 24,800 bp x 2 | 100% | duplication | PF3D7_1347700–[PF3D7_1348300] | 30 genes PF3D7_1347700, PF3D7_1347700, PF3D7_1347700, PF3D7_1347800, PF3D7_1347800, PF3D7_1347800, PF3D7_1347800, PF3D7_1347800, PF3D7_1347800, PF3D7_1347900, PF3D7_1347900, PF3D7_1347900, PF3D7_1348000, PF3D7_1348000, PF3D7_1348000, PF3D7_1348000, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348100, PF3D7_1348200, PF3D7_1348200, PF3D7_1348300, PF3D7_1348300, [PF3D7_1348300] |
|
| NC_004331 | 1,924,642 | Δ1 bp | ? | 100% | intergenic (‑643/‑407) | PF3D7_1348000 ← / → PF3D7_1348100 | conserved Plasmodium protein, unknown function/GTPase, putative |
| NC_004331 | 1,936,001 | 234,800 bp x 2 | 100% | duplication | [PF3D7_1348400]–PF3D7_1354400 | 163 genes [PF3D7_1348400], PF3D7_1348400, PF3D7_1348500, PF3D7_1348500, PF3D7_1348600, PF3D7_1348600, PF3D7_1348600, PF3D7_1348600, PF3D7_1348700, PF3D7_1348700, PF3D7_1348700, PF3D7_1348700, PF3D7_1348700, PF3D7_1348700, PF3D7_1348700, PF3D7_1348700, PF3D7_1348800, PF3D7_1348800, PF3D7_1348800, PF3D7_1348800, PF3D7_1348800, PF3D7_1348900, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349000, PF3D7_1349100, PF3D7_1349100, PF3D7_1349100, PF3D7_1349200, PF3D7_1349300, PF3D7_1349400, PF3D7_1349400, PF3D7_1349400, PF3D7_1349400, PF3D7_1349400, PF3D7_1349500, PF3D7_1349500, PF3D7_1349600, PF3D7_1349600, PF3D7_1349700, PF3D7_1349700, PF3D7_1349800, PF3D7_1349900, PF3D7_1350000, PF3D7_1350000, PF3D7_1350000, PF3D7_1350000, PF3D7_1350000, PF3D7_1350000, PF3D7_1350000, PF3D7_1350000, PF3D7_1350100, PF3D7_1350100, PF3D7_1350200, PF3D7_1350200, PF3D7_1350200, PF3D7_1350200, PF3D7_1350300, PF3D7_1350400, PF3D7_1350500, PF3D7_1350600, PF3D7_1350600, PF3D7_1350700, PF3D7_1350800, PF3D7_1350900, PF3D7_1351000, PF3D7_1351000, PF3D7_1351000, PF3D7_1351000, PF3D7_1351100, PF3D7_1351100, PF3D7_1351100, PF3D7_1351100, PF3D7_1351100, PF3D7_1351100, PF3D7_1351200, PF3D7_1351300, PF3D7_1351300, PF3D7_1351400, PF3D7_1351400, PF3D7_1351500, PF3D7_1351400, PF3D7_1351600, PF3D7_1351700, PF3D7_1351700, PF3D7_1351700, PF3D7_1351800.1, PF3D7_1351800.1, PF3D7_1351800.1, PF3D7_1351800.1, PF3D7_1351900, PF3D7_1352000, PF3D7_1352100, PF3D7_1352200, PF3D7_1352200, PF3D7_1352200, PF3D7_1352200, PF3D7_1352200, PF3D7_1352200, PF3D7_1352200, PF3D7_1352200, PF3D7_1352300, PF3D7_1352400, PF3D7_1352500, PF3D7_1352500, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352600, PF3D7_1352700, PF3D7_1352800, PF3D7_1352800, PF3D7_1352800, PF3D7_1352900, PF3D7_1352900, PF3D7_1352900, PF3D7_1353100, PF3D7_1353100, PF3D7_1353200, PF3D7_1353200, PF3D7_1353300, PF3D7_1353300, PF3D7_1353400, PF3D7_1353500, PF3D7_1353600, PF3D7_1353600, PF3D7_1353600, PF3D7_1353700, PF3D7_1353800, PF3D7_1353800, PF3D7_1353900, PF3D7_1353900, PF3D7_1353900, PF3D7_1353900, PF3D7_1354000, PF3D7_1354100, PF3D7_1354200, PF3D7_1354300, PF3D7_1354300, PF3D7_1354400, PF3D7_1354400, PF3D7_1354400, PF3D7_1354400, PF3D7_1354400 |
|
| NC_004331 | 1,995,659 | Δ6 bp | 100% | intergenic (‑45/‑1359) | PF3D7_1349500 ← / → PF3D7_1349600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,042,405 | C→T | ? | 100% | intergenic (‑850/‑701) | PF3D7_1351100 ← / → PF3D7_1351200 | conserved protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 2,042,409 | A→T | ? | 100% | intergenic (‑854/‑697) | PF3D7_1351100 ← / → PF3D7_1351200 | conserved protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 2,042,415 | C→T | ? | 100% | intergenic (‑860/‑691) | PF3D7_1351100 ← / → PF3D7_1351200 | conserved protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 2,042,419 | A→T | ? | 100% | intergenic (‑864/‑687) | PF3D7_1351100 ← / → PF3D7_1351200 | conserved protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 2,059,037 | +AAAAAAG | ? | 100% | intergenic (+2316/‑579) | PF3D7_1351600 → / → PF3D7_1351700 | glycerol kinase/inner membrane complex protein 1f, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 2,067,160 | G→T | ? | 100% | intergenic (+751/+369) | PF3D7_1351800.1 → / ← PF3D7_1351900 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| NC_004331 | 2,096,878 | +AA | ? | 100% | intergenic (‑66/+30) | PF3D7_1352600 ← / ← PF3D7_1352600 | protein kinase, putative/protein kinase, putative |
| NC_004331 | 2,129,046 | G→A | 100% | intergenic (‑3776/‑1485) | PF3D7_1353100 ← / → PF3D7_1353200 | Plasmodium exported protein, unknown function/membrane‑associated histidine rich protein 2, (MARHP2) | |
| NC_004331 | 2,174,301 | 273,000 bp x 3 | 100% | amplification | PF3D7_1354500–PF3D7_1361000 | 173 genes PF3D7_1354500, PF3D7_1354500, PF3D7_1354600, PF3D7_1354600, PF3D7_1354600, PF3D7_1354700, PF3D7_1354800, PF3D7_1354900, PF3D7_1355100, PF3D7_1355200, PF3D7_1355300, PF3D7_1355400, PF3D7_1355500, PF3D7_1355600, PF3D7_1355600, PF3D7_1355700, PF3D7_1355800, PF3D7_1355800, PF3D7_1355800, PF3D7_1355800, PF3D7_1355900, PF3D7_1356000, PF3D7_1356100, PF3D7_1356200, PF3D7_1356200, PF3D7_1356300, PF3D7_1356300, PF3D7_1356300, PF3D7_1356300, PF3D7_1356300, PF3D7_1356300, PF3D7_1356300, PF3D7_1356400, PF3D7_1356500, PF3D7_1356500, PF3D7_1356600, PF3D7_1356700, PF3D7_1356700, PF3D7_1356700, PF3D7_1356700, PF3D7_1356700, PF3D7_1356700, PF3D7_1356700, PF3D7_1356800, PF3D7_1356900, PF3D7_1356900, PF3D7_1356900, PF3D7_1356900, PF3D7_1356900, PF3D7_1357000, PF3D7_1357100, PF3D7_1357200, PF3D7_1357200, PF3D7_1357200, PF3D7_1357200, PF3D7_1357200, PF3D7_1357200, PF3D7_1357200, PF3D7_1357300, PF3D7_1357400, PF3D7_1357500, PF3D7_1357600, PF3D7_1357600, PF3D7_1357600, PF3D7_1357600, PF3D7_1357700, PF3D7_1357700, PF3D7_1357700, PF3D7_1357700, PF3D7_1357800, PF3D7_1357800, PF3D7_1357800, PF3D7_1357900, PF3D7_1357900, PF3D7_1357900, PF3D7_1357900, PF3D7_1357900, PF3D7_1357900, PF3D7_1358000, PF3D7_1358000, PF3D7_1358100, PF3D7_1358200, PF3D7_1358200, PF3D7_1358300, PF3D7_1358400, PF3D7_1358400, PF3D7_1358400, PF3D7_1358500, PF3D7_1358600, PF3D7_1358700, PF3D7_1358800, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1358900, PF3D7_1359000, PF3D7_1359100, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359200, PF3D7_1359300, PF3D7_1359400, PF3D7_1359400, PF3D7_1359500, PF3D7_1359600, PF3D7_1359700, PF3D7_1359800, PF3D7_1359800, PF3D7_1359800, PF3D7_1359900, PF3D7_1360000, PF3D7_1360100, PF3D7_1360100, PF3D7_1360100, PF3D7_1360100, PF3D7_1360200, PF3D7_1360200, PF3D7_1360200, PF3D7_1360200, PF3D7_1360200, PF3D7_1360200, PF3D7_1360200, PF3D7_1360300, PF3D7_1360400, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360500, PF3D7_1360700, PF3D7_1360700, PF3D7_1360700, PF3D7_1360700, PF3D7_1360700, PF3D7_1360800, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1360900.1, PF3D7_1361000 |
|
| NC_004331 | 2,198,707 | C→T | ? | 100% | intergenic (‑729/‑887) | PF3D7_1355400 ← / → PF3D7_1355500 | tRNA‑Thr/serine/threonine protein phosphatase 5 |
| NC_004331 | 2,211,638 | A→G | ? | 100% | intergenic (‑1180/‑2807) | PF3D7_1355700 ← / → PF3D7_1355800 | NLI interacting factor‑like phosphatase, putative/splicing factor 3B subunit 5, putative |
| NC_004331 | 2,263,058 | Δ1 bp | 100% | intergenic (+1337/+141) | PF3D7_1356800 → / ← PF3D7_1356900 | aurora‑related kinase 3, putative/protein kinase 5 | |
| NC_004331 | 2,265,694 | C→A | ? | 100% | intergenic (‑939/+123) | PF3D7_1356900 ← / ← PF3D7_1357000 | protein kinase 5/elongation factor 1‑alpha |
| NC_004331 | 2,286,622 | Δ2 bp | ? | 100% | intergenic (‑30/+85) | PF3D7_1357700 ← / ← PF3D7_1357700 | U3 small nucleolar RNA‑associated protein 21, putative/U3 small nucleolar RNA‑associated protein 21, putative |
| NC_004331 | 2,450,501 | 21,100 bp x 3 | 100% | amplification | [PF3D7_1361100]–[PF3D7_1361700] | 41 genes [PF3D7_1361100], PF3D7_1361100, PF3D7_1361100, PF3D7_1361100, PF3D7_1361100, PF3D7_1361200, PF3D7_1361200, PF3D7_1361200, PF3D7_1361200, PF3D7_1361200, PF3D7_1361200, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361300, PF3D7_1361400, PF3D7_1361400, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361500.1, PF3D7_1361600, [PF3D7_1361700] |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 2,463,221 | +AT | 100% | intergenic (+27/‑80) | PF3D7_1361300 → / → PF3D7_1361300 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,473,701 | 367,600 bp x 3 | 100% | amplification | PF3D7_1361800–[PF3D7_1372200] | 213 genes PF3D7_1361800, PF3D7_1361900, PF3D7_1362000, PF3D7_1362100, PF3D7_1362100, PF3D7_1362100, PF3D7_1362100, PF3D7_1362100, PF3D7_1362100, PF3D7_1362100, PF3D7_1362200, PF3D7_1362300, PF3D7_1362400, PF3D7_1362500, PF3D7_1362500, PF3D7_1362600, PF3D7_1362600, PF3D7_1362600, PF3D7_1362700, PF3D7_1362800, PF3D7_1362800, PF3D7_1362900, PF3D7_1362900, PF3D7_1363000, PF3D7_1363100, PF3D7_1363100, PF3D7_1363200, PF3D7_1363200, PF3D7_1363300, PF3D7_1363300, PF3D7_1363400, PF3D7_1363400, PF3D7_1363500, PF3D7_1363500, PF3D7_1363500, PF3D7_1363600, PF3D7_1363700, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1363800, PF3D7_1364000, PF3D7_1364100, PF3D7_1364200, PF3D7_1364300, PF3D7_1364400, PF3D7_1364500, PF3D7_1364600, PF3D7_1364800, PF3D7_1364800, PF3D7_1364800, PF3D7_1364800, PF3D7_1364800, PF3D7_1364800, PF3D7_1364800, PF3D7_1364900, PF3D7_1364900, PF3D7_1364900, PF3D7_1364900, PF3D7_1365000, PF3D7_1365100, PF3D7_1365100, PF3D7_1365100, PF3D7_1365200, PF3D7_1365300, PF3D7_1365400, PF3D7_1365500, PF3D7_1365500, PF3D7_1365600, PF3D7_1365600, PF3D7_1365600, PF3D7_1365600, PF3D7_1365600, PF3D7_1365600, PF3D7_1365600, PF3D7_1365600, PF3D7_1365700, PF3D7_1365700, PF3D7_1365700, PF3D7_1365800, PF3D7_1365800, PF3D7_1365800, PF3D7_1365800, PF3D7_1365900, PF3D7_1365900, PF3D7_1366000, PF3D7_1366100, PF3D7_1366100, PF3D7_1366200, PF3D7_1366300, PF3D7_1366300, PF3D7_1366300, PF3D7_1366300, PF3D7_1366400, PF3D7_1366500, PF3D7_1366600, PF3D7_1366700, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366800, PF3D7_1366900, PF3D7_1366900, PF3D7_1366900, PF3D7_1367000, PF3D7_1367000, PF3D7_1367000, PF3D7_1367000, PF3D7_1367000, PF3D7_1367100, PF3D7_1367200, PF3D7_1367200, PF3D7_1367200, PF3D7_1367300, PF3D7_1367300, PF3D7_1367300, PF3D7_1367300, PF3D7_1367400, PF3D7_1367500, PF3D7_1367500, PF3D7_1367600, PF3D7_1367600, PF3D7_1367600, PF3D7_1367700, PF3D7_1367800, PF3D7_1367900, PF3D7_1368000, PF3D7_1368000, PF3D7_1368000, PF3D7_1368000, PF3D7_1368100, PF3D7_1368100, PF3D7_1368100, PF3D7_1368200, PF3D7_1368200, PF3D7_1368300, PF3D7_1368300, PF3D7_1368300, PF3D7_1368300, PF3D7_1368300, PF3D7_1368300, PF3D7_1368400, PF3D7_1368400, PF3D7_1368400, PF3D7_1368400, PF3D7_1368400, PF3D7_1368400, PF3D7_1368500, PF3D7_1368600, PF3D7_1368700, PF3D7_1368800, PF3D7_1368900, PF3D7_1368900, PF3D7_1368900, PF3D7_1369000, PF3D7_1369000, PF3D7_1369000, PF3D7_1369000, PF3D7_1369000, PF3D7_1369100, PF3D7_1369200, PF3D7_1369300, PF3D7_1369300, PF3D7_1369400, PF3D7_1369400, PF3D7_1369500, PF3D7_1369500, PF3D7_1369600, PF3D7_1369700, PF3D7_1369700, PF3D7_1369700, PF3D7_1369700, PF3D7_1369700, PF3D7_1369800, PF3D7_1369900, PF3D7_1370000, PF3D7_1370100, PF3D7_1370200, PF3D7_1370300, PF3D7_1370300, PF3D7_1370500, PF3D7_1370800, PF3D7_1370900, PF3D7_1371000, PF3D7_1371200, PF3D7_1371300, PF3D7_1371500, PF3D7_1371500, PF3D7_1371700, PF3D7_1371700, PF3D7_1371700, PF3D7_1371800, PF3D7_1371800, PF3D7_1371900, PF3D7_1371900, PF3D7_1372000, PF3D7_1372000, PF3D7_1372100, PF3D7_1372100, [PF3D7_1372200] |
|
| NC_004331 | 2,495,387 | +T | ? | 100% | intergenic (+1675/‑537) | PF3D7_1362300 → / → PF3D7_1362400 | transmembrane and coiled‑coil domain‑containing protein 1, putative/calpain |
| NC_004331 | 2,508,810 | T→A | 100% | intergenic (+1596/‑1545) | PF3D7_1362600 → / → PF3D7_1362700 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,508,812 | T→C | 100% | intergenic (+1598/‑1543) | PF3D7_1362600 → / → PF3D7_1362700 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,508,814 | T→A | 100% | intergenic (+1600/‑1541) | PF3D7_1362600 → / → PF3D7_1362700 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,508,823 | T→A | 100% | intergenic (+1609/‑1532) | PF3D7_1362600 → / → PF3D7_1362700 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,508,827 | C→G | 100% | intergenic (+1613/‑1528) | PF3D7_1362600 → / → PF3D7_1362700 | conserved protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_004331 | 2,539,870 | C→T | ? | 100% | intergenic (+228/+78) | PF3D7_1363100 → / ← PF3D7_1363200 | conserved Plasmodium protein, unknown function/bifunctional polynucleotide phosphatase/kinase |
| NC_004331 | 2,547,633 | Δ2 bp | 100% | intergenic (‑1150/‑130) | PF3D7_1363400 ← / → PF3D7_1363500 | polyubiquitin binding protein, putative/CCR4 domain‑containing protein 2, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 2,577,770 | Δ2 bp | ? | 100% | intergenic (‑484/+1388) | PF3D7_1364200 ← / ← PF3D7_1364300 | nucleoporin NUP205, putative/pre‑mRNA‑splicing factor ATP‑dependent RNA helicase PRP16 |
| NC_004331 | 2,624,062 | G→A | ? | 100% | intergenic (+62/+491) | PF3D7_1365600 → / ← PF3D7_1365700 | DNA topoisomerase 6 subunit B, putative/SNARE associated Golgi protein, putative |
| NC_004331 | 2,650,572 | G→T | ? | 100% | intergenic (‑1013/+31) | PF3D7_1366300 ← / ← PF3D7_1366300 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 2,650,584 | G→T | ? | 100% | intergenic (‑1025/+19) | PF3D7_1366300 ← / ← PF3D7_1366300 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_004331 | 2,663,057 | C→T | 100% | intergenic (+1035/+365) | PF3D7_1366500 → / ← PF3D7_1366600 | nucleoside diphosphate kinase/signal recognition particle receptor subunit alpha, putative | |
| NC_004331 | 2,808,449 | +TA | ? | 100% | intergenic (+1290/+114) | PF3D7_1371300 → / ← PF3D7_1371500 | 28S ribosomal RNA/probable protein, unknown function |
| NC_004331 | 2,850,901 | 29,000 bp x 4 | 100% | amplification | [PF3D7_1372400]–PF3D7_1373300 | [PF3D7_1372400], PF3D7_1372600, PF3D7_1372600, PF3D7_1372700, PF3D7_1372700, PF3D7_1372800, PF3D7_1372800, PF3D7_1373000, PF3D7_1373000, PF3D7_1373100, PF3D7_1373100, PF3D7_1373200, PF3D7_1373300, PF3D7_1373300 | |
| NC_004331 | 2,884,801 | 17,900 bp x 17 | 100% | amplification | [PF3D7_1373500]–PF3D7_1373500 | [PF3D7_1373500], PF3D7_1373500 | |
| NC_004331 | 2,901,479 | G→A | ? | 100% | intergenic (‑9139/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| NC_004331 | 2,902,701 | Δ1,000 bp | ? | 100% | intergenic (‑10361/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_004331 | 2,922,534 | Δ1 bp | 100% | intergenic (‑30194/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004331 | 2,922,537 | G→T | 100% | intergenic (‑30197/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004331 | 2,922,544 | G→T | 100% | intergenic (‑30204/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004331 | 2,923,688 | T→G | 100% | intergenic (‑31348/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_004331 | 2,923,695 | 2 bp→AG | 100% | intergenic (‑31355/–) | PF3D7_1373500 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_036769 | 1 | 34,300 bp x 6 | 100% | amplification | [C2H85_pgp01]–C2H85_pgt34 | 69 genes [C2H85_pgp01], C2H85_pgt01, C2H85_pgt02, C2H85_pgt03, C2H85_pgt04, C2H85_pgt05, C2H85_pgt06, C2H85_pgt07, C2H85_pgt08, C2H85_pgt09, C2H85_pgt10, C2H85_pgt11, C2H85_pgp30, C2H85_pgp29, C2H85_pgp28, C2H85_pgp27, C2H85_pgp26, C2H85_pgp25, C2H85_pgp24, C2H85_pgp23, C2H85_pgp22, C2H85_pgp21, C2H85_pgp20, C2H85_pgp19, C2H85_pgp18, C2H85_pgp17, C2H85_pgp16, C2H85_pgp15, C2H85_pgp14, C2H85_pgp13, C2H85_pgt12, C2H85_pgt13, C2H85_pgt14, C2H85_pgt15, C2H85_pgp12, C2H85_pgp11, C2H85_pgt16, C2H85_pgp10, C2H85_pgt17, C2H85_pgp09, C2H85_pgp08, C2H85_pgp07, C2H85_pgp07, C2H85_pgp06, C2H85_pgp05, C2H85_pgp04, C2H85_pgp03, C2H85_pgp02, C2H85_pgt18, C2H85_pgr04, C2H85_pgt19, C2H85_pgt20, C2H85_pgt21, C2H85_pgt22, C2H85_pgt23, C2H85_pgt24, C2H85_pgt25, C2H85_pgr03, C2H85_pgt26, C2H85_pgr02, C2H85_pgt27, C2H85_pgt28, C2H85_pgt29, C2H85_pgt30, C2H85_pgt31, C2H85_pgt32, C2H85_pgt33, C2H85_pgr01, C2H85_pgt34 |
|
| NC_037280 | 138 | A→G | 100% | intergenic (–/‑25094) | – / → PF3D7_0200100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_037280 | 21,301 | Δ8,500 bp | 100% | PF3D7_0200100 | PF3D7_0200100 | ||
| NC_037280 | 22,828 | G→C | 100% | Δ | intergenic (–/‑2404) | – / → PF3D7_0200100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_037280 | 22,889 | C→T | 100% | Δ | intergenic (–/‑2343) | – / → PF3D7_0200100 | –/erythrocyte membrane protein 1, PfEMP1 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037280 | 30,101 | Δ21,700 bp | 100% | [PF3D7_0200100]–PF3D7_0200700 | [PF3D7_0200100], PF3D7_0200200, PF3D7_0200200, PF3D7_0200300, PF3D7_0200400, PF3D7_0200400, PF3D7_0200500, PF3D7_0200500, PF3D7_0200600, PF3D7_0200600, PF3D7_0200700, PF3D7_0200700 | ||
| NC_037280 | 54,901 | Δ56,200 bp | 100% | PF3D7_0201000–PF3D7_0202100 | 25 genes PF3D7_0201000, PF3D7_0201000, PF3D7_0201100, PF3D7_0201200, PF3D7_0201200, PF3D7_0201300, PF3D7_0201300, PF3D7_0201400, PF3D7_0201400, PF3D7_0201500, PF3D7_0201500, PF3D7_0201600, PF3D7_0201600, PF3D7_0201700, PF3D7_0201700, PF3D7_0201800, PF3D7_0201800, PF3D7_0201800, PF3D7_0201800, PF3D7_0201900, PF3D7_0201900, PF3D7_0202000, PF3D7_0202000, PF3D7_0202100, PF3D7_0202100 |
||
| NC_037280 | 61,649 | G→A | 100% | 100% | intergenic (‑1330/‑1508) | PF3D7_0201100 ← / → PF3D7_0201200 | Plasmodium exported protein, unknown function, fragment/rifin |
| NC_037280 | 61,660 | G→C | 100% | 100% | intergenic (‑1341/‑1497) | PF3D7_0201100 ← / → PF3D7_0201200 | Plasmodium exported protein, unknown function, fragment/rifin |
| NC_037280 | 111,101 | 12,200 bp x 2 | 100% | duplication | PF3D7_0202200–[PF3D7_0202400] | PF3D7_0202200, PF3D7_0202200, PF3D7_0202300, PF3D7_0202300, [PF3D7_0202400] | |
| NC_037280 | 127,801 | 491,600 bp x 3 | 100% | amplification | PF3D7_0202500–[PF3D7_0215000] | 367 genes PF3D7_0202500, PF3D7_0202600.1, PF3D7_0202600.1, PF3D7_0202600.1, PF3D7_0202600.1, PF3D7_0202600.1, PF3D7_0202600.1, PF3D7_0202700, PF3D7_0202800, PF3D7_0202800, PF3D7_0202800, PF3D7_0202800, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0202900, PF3D7_0203000, PF3D7_0203100, PF3D7_0203200, PF3D7_0203300, PF3D7_0203400, PF3D7_0203400, PF3D7_0203400, PF3D7_0203400, PF3D7_0203500, PF3D7_0203600, PF3D7_0203700, PF3D7_0203700, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203800, PF3D7_0203900, PF3D7_0204000, PF3D7_0204000, PF3D7_0204100, PF3D7_0204200, PF3D7_0204200, PF3D7_0204200, PF3D7_0204200, PF3D7_0204200, PF3D7_0204300, PF3D7_0204400, PF3D7_0204400, PF3D7_0204400, PF3D7_0204400, PF3D7_0204500, PF3D7_0204600, PF3D7_0204700, PF3D7_0204800, PF3D7_0204900, PF3D7_0204900, PF3D7_0205000, PF3D7_0205100, PF3D7_0205100, PF3D7_0205100, PF3D7_0205100, PF3D7_0205200, PF3D7_0205200, PF3D7_0205200, PF3D7_0205200, PF3D7_0205300, PF3D7_0205300, PF3D7_0205300, PF3D7_0205300, PF3D7_0205300, PF3D7_0205300, PF3D7_0205400, PF3D7_0205500, PF3D7_0205500, PF3D7_0205500, PF3D7_0205600, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205700.1, PF3D7_0205800, PF3D7_0205800, PF3D7_0205800, PF3D7_0205900, PF3D7_0205900, PF3D7_0205900, PF3D7_0205900, PF3D7_0206000, PF3D7_0206100, PF3D7_0206100, PF3D7_0206100, PF3D7_0206100, PF3D7_0206200, PF3D7_0206500, PF3D7_0206600, PF3D7_0206600, PF3D7_0206700, PF3D7_0206800, PF3D7_0206900.1, PF3D7_0206900.1, PF3D7_0206900.1, PF3D7_0206900.1, PF3D7_0206900.1, PF3D7_0207000, PF3D7_0207000, PF3D7_0207100, PF3D7_0207100, PF3D7_0207100, PF3D7_0207200, PF3D7_0207300, PF3D7_0207300, PF3D7_0207300, PF3D7_0207300, PF3D7_0207300, PF3D7_0207400, PF3D7_0207400, PF3D7_0207400, PF3D7_0207400, PF3D7_0207500, PF3D7_0207500, PF3D7_0207500, PF3D7_0207500, PF3D7_0207600, PF3D7_0207600, PF3D7_0207600, PF3D7_0207600, PF3D7_0207700, PF3D7_0207700, PF3D7_0207700, PF3D7_0207700, PF3D7_0207800, PF3D7_0207800, PF3D7_0207800, PF3D7_0207800, PF3D7_0207900, PF3D7_0207900, PF3D7_0207900, PF3D7_0207900, PF3D7_0208000, PF3D7_0208000, PF3D7_0208000, PF3D7_0208000, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208100.1, PF3D7_0208200, PF3D7_0208300, PF3D7_0208400, PF3D7_0208500, PF3D7_0208500, PF3D7_0208500, PF3D7_0208600, PF3D7_0208700.1, PF3D7_0208700.1, PF3D7_0208700.1, PF3D7_0208700.1, PF3D7_0208700.1, PF3D7_0208700.1, PF3D7_0208700.1, PF3D7_0208800, PF3D7_0208900, PF3D7_0209000, PF3D7_0209100, PF3D7_0209100, PF3D7_0209100, PF3D7_0209200, PF3D7_0209200, PF3D7_0209200, PF3D7_0209200, PF3D7_0209200, PF3D7_0209200, PF3D7_0209200, PF3D7_0209200, PF3D7_0209300, PF3D7_0209300, PF3D7_0209400, PF3D7_0209400, PF3D7_0209400, PF3D7_0209400, PF3D7_0209400, PF3D7_0209400, PF3D7_0209400, PF3D7_0209500, PF3D7_0209600, PF3D7_0209600, PF3D7_0209600, PF3D7_0209600, PF3D7_0209600, PF3D7_0209600, PF3D7_0209600, PF3D7_0209600, PF3D7_0209700, PF3D7_0209800, PF3D7_0209800, PF3D7_0209900, PF3D7_0210000, PF3D7_0210100.1, PF3D7_0210100.1, PF3D7_0210100.1, PF3D7_0210100.1, PF3D7_0210100.1, PF3D7_0210100.1, PF3D7_0210200, PF3D7_0210200, PF3D7_0210300, PF3D7_0210300, PF3D7_0210400, PF3D7_0210400, PF3D7_0210400, PF3D7_0210400, PF3D7_0210500, PF3D7_0210600, PF3D7_0210600, PF3D7_0210600, PF3D7_0210600, PF3D7_0210600, PF3D7_0210700, PF3D7_0210800, PF3D7_0210900, PF3D7_0211000, PF3D7_0211100, PF3D7_0211200, PF3D7_0211300, PF3D7_0211300, PF3D7_0211300, PF3D7_0211300, PF3D7_0211300, PF3D7_0211300, PF3D7_0211400, PF3D7_0211400, PF3D7_0211400, PF3D7_0211400, PF3D7_0211400, PF3D7_0211400, PF3D7_0211400, PF3D7_0211400, PF3D7_0211500, PF3D7_0211600, PF3D7_0211700, PF3D7_0211800, PF3D7_0211900, PF3D7_0211900, PF3D7_0211900, PF3D7_0212000, PF3D7_0212000, PF3D7_0212000, PF3D7_0212100, PF3D7_0212200, PF3D7_0212200, PF3D7_0212300, PF3D7_0212300, PF3D7_0212300, PF3D7_0212400, PF3D7_0212400, PF3D7_0212400, PF3D7_0212500, PF3D7_0212500, PF3D7_0212600, PF3D7_0212600, PF3D7_0212700, PF3D7_0212800, PF3D7_0212900, PF3D7_0213000, PF3D7_0213100, PF3D7_0213100, PF3D7_0213100, PF3D7_0213200, PF3D7_0213200, PF3D7_0213300, PF3D7_0213300, PF3D7_0213300, PF3D7_0213400, PF3D7_0213400, PF3D7_0213400, PF3D7_0213400, PF3D7_0213500, PF3D7_0213500, PF3D7_0213500, PF3D7_0213500, PF3D7_0213500, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213600, PF3D7_0213700, PF3D7_0213700, PF3D7_0213800, PF3D7_0213900, PF3D7_0214000, PF3D7_0214000, PF3D7_0214100, PF3D7_0214100, PF3D7_0214100, PF3D7_0214100, PF3D7_0214200, PF3D7_0214200, PF3D7_0214300, PF3D7_0214400, PF3D7_0214400, PF3D7_0214400, PF3D7_0214500, PF3D7_0214600, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214700, PF3D7_0214800, PF3D7_0214800, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, PF3D7_0214900, [PF3D7_0215000] |
|
| NC_037280 | 218,783 | C→T | ? | 100% | intergenic (‑68/+67) | PF3D7_0205200 ← / ← PF3D7_0205200 | MORN repeat protein, putative/MORN repeat protein, putative |
| NC_037280 | 245,786 | Δ2 bp | ? | 100% | intergenic (+52/‑270) | PF3D7_0206100 → / → PF3D7_0206100 | cysteine desulfuration protein SufE/cysteine desulfuration protein SufE |
| NC_037280 | 307,597 | Δ2 bp | ? | 100% | intergenic (‑570/+1249) | PF3D7_0207600 ← / ← PF3D7_0207700 | serine repeat antigen 5/serine repeat antigen 4 |
| NC_037280 | 380,252 | A→T | ? | 100% | intergenic (+407/+878) | PF3D7_0209000 → / ← PF3D7_0209100 | 6‑cysteine protein P230/patatin‑like phospholipase, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037280 | 409,947 | C→T | ? | 100% | intergenic (+1509/‑36) | PF3D7_0209900 → / → PF3D7_0210000 | uncharacterized ncRNA/secretory complex protein 61 gamma subunit |
| NC_037280 | 409,950 | C→T | ? | 100% | intergenic (+1512/‑33) | PF3D7_0209900 → / → PF3D7_0210000 | uncharacterized ncRNA/secretory complex protein 61 gamma subunit |
| NC_037280 | 409,961 | C→T | ? | 100% | intergenic (+1523/‑22) | PF3D7_0209900 → / → PF3D7_0210000 | uncharacterized ncRNA/secretory complex protein 61 gamma subunit |
| NC_037280 | 409,971 | G→T | ? | 100% | intergenic (+1533/‑12) | PF3D7_0209900 → / → PF3D7_0210000 | uncharacterized ncRNA/secretory complex protein 61 gamma subunit |
| NC_037280 | 416,046 | +ATTATT | 100% | coding (5092/7710 nt) | PF3D7_0210200 ← | conserved Plasmodium protein, unknown function | |
| NC_037280 | 435,992 | C→T | ? | 100% | intergenic (‑1906/‑58) | PF3D7_0210600 ← / → PF3D7_0210700 | conserved protein, unknown function/syntaxin, Qa‑SNARE family |
| NC_037280 | 435,996 | A→T | ? | 100% | intergenic (‑1910/‑54) | PF3D7_0210600 ← / → PF3D7_0210700 | conserved protein, unknown function/syntaxin, Qa‑SNARE family |
| NC_037280 | 483,153 | C→T | ? | 100% | intergenic (+1721/‑283) | PF3D7_0212000 → / → PF3D7_0212100 | GDP‑fructose:GMP antiporter, putative/conserved Plasmodium protein, unknown function |
| NC_037280 | 483,158 | C→T | ? | 100% | intergenic (+1726/‑278) | PF3D7_0212000 → / → PF3D7_0212100 | GDP‑fructose:GMP antiporter, putative/conserved Plasmodium protein, unknown function |
| NC_037280 | 507,889 | G→A | ? | 100% | intergenic (‑35/‑1636) | PF3D7_0212400 ← / → PF3D7_0212500 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037280 | 526,087 | C→A | ? | 100% | intergenic (‑44/‑2162) | PF3D7_0212700 ← / → PF3D7_0212800 | SRR1‑like protein/multidrug efflux pump, putative |
| NC_037280 | 556,776 | C→T | ? | 100% | intergenic (‑1482/‑272) | PF3D7_0213600 ← / → PF3D7_0213700 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| NC_037280 | 622,701 | 8,600 bp x 3 | 100% | amplification | PF3D7_0215100–[PF3D7_0215300] | PF3D7_0215100, PF3D7_0215100, PF3D7_0215100, PF3D7_0215100, PF3D7_0215100, PF3D7_0215100, PF3D7_0215200, [PF3D7_0215300] | |
| NC_037280 | 631,349 | T→A | ? | 100% | intergenic (‑41/+3240) | PF3D7_0215300 ← / ← PF3D7_0215400 | acyl‑CoA synthetase/conserved Plasmodium protein, unknown function |
| NC_037280 | 631,351 | T→A | ? | 100% | intergenic (‑43/+3238) | PF3D7_0215300 ← / ← PF3D7_0215400 | acyl‑CoA synthetase/conserved Plasmodium protein, unknown function |
| NC_037280 | 634,401 | 2,700 bp x 6 | 100% | amplification | [PF3D7_0215400] | [PF3D7_0215400] | |
| NC_037280 | 635,805 | C→T | ? | 100% | R568K (AGA→AAA) | PF3D7_0215400 ← | conserved Plasmodium protein, unknown function |
| NC_037280 | 640,101 | 274,500 bp x 3 | 100% | amplification | PF3D7_0215500–PF3D7_0223400 | 157 genes PF3D7_0215500, PF3D7_0215600, PF3D7_0215700, PF3D7_0215700, PF3D7_0215800, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0215900, PF3D7_0216000, PF3D7_0216100, PF3D7_0216200, PF3D7_0216200, PF3D7_0216300, PF3D7_0216400, PF3D7_0216500, PF3D7_0216500, PF3D7_0216600, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216700.1, PF3D7_0216800, PF3D7_0216900, PF3D7_0217000, PF3D7_0217000, PF3D7_0217000, PF3D7_0217000, PF3D7_0217100, PF3D7_0217200, PF3D7_0217300, PF3D7_0217300, PF3D7_0217300, PF3D7_0217400, PF3D7_0217400, PF3D7_0217500, PF3D7_0217500, PF3D7_0217500, PF3D7_0217500, PF3D7_0217500, PF3D7_0217600, PF3D7_0217600, PF3D7_0217600, PF3D7_0217600, PF3D7_0217600, PF3D7_0217600, PF3D7_0217600, PF3D7_0217700, PF3D7_0217700, PF3D7_0217700, PF3D7_0217700, PF3D7_0217800, PF3D7_0217900, PF3D7_0218000, PF3D7_0218100, PF3D7_0218100, PF3D7_0218100, PF3D7_0218100, PF3D7_0218200, PF3D7_0218300, PF3D7_0218300, PF3D7_0218300, PF3D7_0218300, PF3D7_0218400, PF3D7_0218500, PF3D7_0218500, PF3D7_0218600, PF3D7_0218700, PF3D7_0218700, PF3D7_0218800, PF3D7_0218900, PF3D7_0219000, PF3D7_0219100, PF3D7_0219200, PF3D7_0219200, PF3D7_0219300, PF3D7_0219400.1, PF3D7_0219400.1, PF3D7_0219400.1, PF3D7_0219500, PF3D7_0219500, PF3D7_0219600, PF3D7_0219700, PF3D7_0219700, PF3D7_0219800, PF3D7_0219800, PF3D7_0219900, PF3D7_0219900, PF3D7_0220000, PF3D7_0220000, PF3D7_0220100, PF3D7_0220100, PF3D7_0220200, PF3D7_0220200, PF3D7_0220300, PF3D7_0220300, PF3D7_0220500, PF3D7_0220500, PF3D7_0220600, PF3D7_0220600, PF3D7_0220700, PF3D7_0220700, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0220800, PF3D7_0221000, PF3D7_0221000, PF3D7_0221200, PF3D7_0221200, PF3D7_0221400, PF3D7_0221400, PF3D7_0221700, PF3D7_0221700, PF3D7_0221800, PF3D7_0222000, PF3D7_0222100, PF3D7_0222100, PF3D7_0222200, PF3D7_0222200, PF3D7_0222500, PF3D7_0222500, PF3D7_0222600, PF3D7_0222600, PF3D7_0222700, PF3D7_0222700, PF3D7_0222800, PF3D7_0222800, PF3D7_0223100, PF3D7_0223100, PF3D7_0223200, PF3D7_0223200, PF3D7_0223300, PF3D7_0223300, PF3D7_0223400, PF3D7_0223400 |
|
| NC_037280 | 644,517 | +ATAT | ? | 100% | intergenic (‑200/‑1412) | PF3D7_0215600 ← / → PF3D7_0215700 | conserved Plasmodium protein, unknown function/DNA‑directed RNA polymerase II subunit RPB2, putative |
| NC_037280 | 675,362 | A→T | ? | 100% | intergenic (+804/‑69) | PF3D7_0216300 → / → PF3D7_0216400 | conserved Plasmodium protein, unknown function/vacuolar protein sorting‑associated protein 45 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037280 | 675,375 | A→T | ? | 100% | intergenic (+817/‑56) | PF3D7_0216300 → / → PF3D7_0216400 | conserved Plasmodium protein, unknown function/vacuolar protein sorting‑associated protein 45 |
| NC_037280 | 675,383 | A→T | ? | 100% | intergenic (+825/‑48) | PF3D7_0216300 → / → PF3D7_0216400 | conserved Plasmodium protein, unknown function/vacuolar protein sorting‑associated protein 45 |
| NC_037280 | 676,139 | +ATA | 100% | coding (709/2169 nt) | PF3D7_0216400 → | vacuolar protein sorting‑associated protein 45 | |
| NC_037280 | 695,801 | Δ2 bp | ? | 100% | intergenic (+18/+391) | PF3D7_0216700.1 → / ← PF3D7_0216800 | autophagy‑related protein 11, putative/TMEM121 domain‑containing protein, putative |
| NC_037280 | 706,999 | C→T | ? | 100% | intergenic (‑412/‑739) | PF3D7_0217000 ← / → PF3D7_0217100 | conserved Plasmodium membrane protein, unknown function/ATP synthase subunit alpha, mitochondrial |
| NC_037280 | 707,002 | A→T | ? | 100% | intergenic (‑415/‑736) | PF3D7_0217000 ← / → PF3D7_0217100 | conserved Plasmodium membrane protein, unknown function/ATP synthase subunit alpha, mitochondrial |
| NC_037280 | 719,281 | C→A | ? | 100% | intergenic (+1000/‑1156) | PF3D7_0217400 → / → PF3D7_0217500 | conserved protein, unknown function/calcium‑dependent protein kinase 1 |
| NC_037280 | 745,527 | G→T | ? | 100% | N62K (AAC→AAA) | PF3D7_0218200 ← | SUZ domain‑containing protein, putative |
| NC_037280 | 752,853 | T→A | 100% | 100% | intergenic (‑1116/‑113) | PF3D7_0218400 ← / → PF3D7_0218500 | ATP‑dependent RNA helicase DDX47, putative/small nuclear ribonucleoprotein Sm D2, putative |
| NC_037280 | 802,341 | Δ6 bp | ? | 100% | intergenic (+755/‑2174) | PF3D7_0220000 → / → PF3D7_0220100 | liver stage antigen 3/DnaJ protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037280 | 804,062 | +T | ? | 100% | intergenic (+2476/‑458) | PF3D7_0220000 → / → PF3D7_0220100 | liver stage antigen 3/DnaJ protein, putative |
| NC_037280 | 813,411 | Δ2 bp | ? | 100% | intergenic (‑3113/+415) | PF3D7_0220200 ← / ← PF3D7_0220300 | Plasmodium exported protein, unknown function/Plasmodium exported protein, unknown function |
| NC_037280 | 845,039 | +AT | 100% | intergenic (+923/‑3053) | PF3D7_0220800 → / → PF3D7_0221000 | cytoadherence linked asexual protein 2/Plasmodium exported protein, unknown function | |
| NC_037280 | 913,551 | A→C | ? | 100% | K26N (AAA→AAC) | PF3D7_0223400 → | rifin |
| NC_037280 | 913,656 | A→C | 100% | V61V (GTA→GTC) | PF3D7_0223400 → | rifin | |
| NC_037280 | 913,670 | T→A | 100% | V66E (GTG→GAG) | PF3D7_0223400 → | rifin | |
| NC_037280 | 916,401 | 23,300 bp x 10 | 100% | amplification | [PF3D7_0223500]–PF3D7_0223500 | [PF3D7_0223500], PF3D7_0223500 | |
| NC_037281 | 1 | 88,700 bp x 13 | 100% | amplification | PF3D7_1000100–PF3D7_1001600 | 25 genes PF3D7_1000100, PF3D7_1000100, PF3D7_1000200, PF3D7_1000200, PF3D7_1000300, PF3D7_1000300, PF3D7_1000400, PF3D7_1000400, PF3D7_1000500, PF3D7_1000500, PF3D7_1000600, PF3D7_1000600, PF3D7_1001000, PF3D7_1001000, PF3D7_1001100.1, PF3D7_1001100.1, PF3D7_1001100.1, PF3D7_1001100.1, PF3D7_1001200, PF3D7_1001300, PF3D7_1001300, PF3D7_1001400, PF3D7_1001400, PF3D7_1001500, PF3D7_1001600 |
|
| NC_037281 | 200 | C→A | ? | 100% | intergenic (–/‑28290) | – / → PF3D7_1000100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_037281 | 381 | A→G | 100% | intergenic (–/‑28109) | – / → PF3D7_1000100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 20,013 | C→T | 100% | intergenic (–/‑8477) | – / → PF3D7_1000100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_037281 | 61,402 | Δ2 bp | ? | 100% | intergenic (‑8803/‑1749) | PF3D7_1000600 ← / → PF3D7_1001000 | rifin/Plasmodium exported protein (hyp12), unknown function |
| NC_037281 | 70,451 | A→T | ? | 100% | intergenic (‑1490/+96) | PF3D7_1001100.1 ← / ← PF3D7_1001200 | acyl‑CoA binding protein, isoform 1, ACBP1/acyl‑CoA binding protein, isoform 2, ACBP2 |
| NC_037281 | 73,608 | Δ2 bp | ? | 100% | intergenic (‑39/+108) | PF3D7_1001300 ← / ← PF3D7_1001300 | Plasmodium exported protein (PHISTa), unknown function/Plasmodium exported protein (PHISTa), unknown function |
| NC_037281 | 92,601 | 11,700 bp x 2 | 100% | duplication | [PF3D7_1001700]–PF3D7_1002000 | [PF3D7_1001700], PF3D7_1001700, PF3D7_1001800, PF3D7_1001800, PF3D7_1001900, PF3D7_1001900, PF3D7_1002000 | |
| NC_037281 | 94,940 | (A)25→24 | 100% | intergenic (‑1414/+1173) | PF3D7_1001700 ← / ← PF3D7_1001800 | Plasmodium exported protein (PHISTc), unknown function/Plasmodium exported protein (PHISTc), unknown function | |
| NC_037281 | 100,392 | G→A | 100% | intergenic (‑31/+2726) | PF3D7_1001900 ← / ← PF3D7_1002000 | Plasmodium exported protein (hyp16), unknown function/Plasmodium exported protein (hyp2), unknown function | |
| NC_037281 | 106,701 | 1,700 bp x 10 | 100% | amplification | PF3D7_1002100 ← | EMP1‑trafficking protein | |
| NC_037281 | 112,801 | 5,600 bp x 4 | 100% | amplification | PF3D7_1002200–[PF3D7_1002300] | PF3D7_1002200, PF3D7_1002200, [PF3D7_1002300] | |
| NC_037281 | 121,301 | 81,600 bp x 3 | 100% | amplification | PF3D7_1002400.1–PF3D7_1004300 | 54 genes PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002400.1, PF3D7_1002500, PF3D7_1002500, PF3D7_1002500, PF3D7_1002600, PF3D7_1002700, PF3D7_1002800, PF3D7_1002900, PF3D7_1002900, PF3D7_1002900, PF3D7_1002900, PF3D7_1002900, PF3D7_1003000, PF3D7_1003100, PF3D7_1003100, PF3D7_1003100, PF3D7_1003100, PF3D7_1003200, PF3D7_1003200, PF3D7_1003300, PF3D7_1003400, PF3D7_1003500, PF3D7_1003500, PF3D7_1003600, PF3D7_1003700, PF3D7_1003800, PF3D7_1003900, PF3D7_1003900, PF3D7_1004000, PF3D7_1004000, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004100, PF3D7_1004200, PF3D7_1004200, PF3D7_1004300 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 141,976 | C→T | ? | 100% | intergenic (+2123/‑443) | PF3D7_1002900 → / → PF3D7_1003000 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| NC_037281 | 144,543 | +ATA | ? | 100% | coding (2125/3819 nt) | PF3D7_1003000 → | conserved protein, unknown function |
| NC_037281 | 180,675 | Δ1 bp | ? | 100% | intergenic (‑449/‑1569) | PF3D7_1004000 ← / → PF3D7_1004100 | 60S ribosomal protein L13, putative/conserved Plasmodium protein, unknown function |
| NC_037281 | 203,998 | C→T | ? | 100% | intergenic (‑1154/+3002) | PF3D7_1004300 ← / ← PF3D7_1004400 | E3 ubiquitin‑protein ligase, putative/RNA‑binding protein, putative |
| NC_037281 | 207,001 | 2,700 bp x 7 | 100% | amplification | [PF3D7_1004400] | [PF3D7_1004400] | |
| NC_037281 | 215,701 | 146,500 bp x 3 | 100% | amplification | PF3D7_1004600–PF3D7_1008700 | 97 genes PF3D7_1004600, PF3D7_1004600, PF3D7_1004600, PF3D7_1004600, PF3D7_1004600, PF3D7_1004600, PF3D7_1004700, PF3D7_1004700, PF3D7_1004700, PF3D7_1004700, PF3D7_1004800, PF3D7_1004800, PF3D7_1004800, PF3D7_1004900, PF3D7_1005000, PF3D7_1005100, PF3D7_1005200, PF3D7_1005200, PF3D7_1005200, PF3D7_1005300, PF3D7_1005300, PF3D7_1005400, PF3D7_1005400, PF3D7_1005500, PF3D7_1005600, PF3D7_1005700, PF3D7_1005700, PF3D7_1005800, PF3D7_1005800, PF3D7_1005900, PF3D7_1006000, PF3D7_1006000, PF3D7_1006100, PF3D7_1006100, PF3D7_1006100, PF3D7_1006100, PF3D7_1006100, PF3D7_1006200, PF3D7_1006200, PF3D7_1006200, PF3D7_1006300, PF3D7_1006300, PF3D7_1006300, PF3D7_1006300, PF3D7_1006300, PF3D7_1006300, PF3D7_1006400, PF3D7_1006500, PF3D7_1006600, PF3D7_1006700, PF3D7_1006700, PF3D7_1006800, PF3D7_1006800, PF3D7_1006800, PF3D7_1006800, PF3D7_1006900, PF3D7_1006900, PF3D7_1006900, PF3D7_1006900, PF3D7_1006900, PF3D7_1006900, PF3D7_1006900, PF3D7_1006900, PF3D7_1007000, PF3D7_1007000, PF3D7_1007000, PF3D7_1007000, PF3D7_1007000, PF3D7_1007000, PF3D7_1007000, PF3D7_1007000, PF3D7_1007100, PF3D7_1007100, PF3D7_1007100, PF3D7_1007100, PF3D7_1007200, PF3D7_1007200, PF3D7_1007200, PF3D7_1007200, PF3D7_1007200, PF3D7_1007300, PF3D7_1007300, PF3D7_1007400, PF3D7_1007500, PF3D7_1007600, PF3D7_1007700, PF3D7_1007800, PF3D7_1007900, PF3D7_1008000, PF3D7_1008100, PF3D7_1008200, PF3D7_1008400, PF3D7_1008400, PF3D7_1008500, PF3D7_1008600, PF3D7_1008700, PF3D7_1008700 |
|
| NC_037281 | 275,563 | Δ17 bp | ? | 100% | intergenic (+137/‑2042) | PF3D7_1006700 → / → PF3D7_1006800 | conserved Plasmodium protein, unknown function/single‑strand telomeric DNA‑binding protein GBP2, putative |
| NC_037281 | 307,562 | Δ1 bp | ? | 100% | intergenic (‑1643/+3835) | PF3D7_1007700 ← / ← PF3D7_1007800 | AP2 domain transcription factor AP2‑I/conserved Plasmodium protein, unknown function |
| NC_037281 | 313,431 | A→G | 100% | 100% | N362N (AAT→AAC) | PF3D7_1007800 ← | conserved Plasmodium protein, unknown function |
| NC_037281 | 315,103 | Δ2 bp | ? | 100% | intergenic (‑587/‑1545) | PF3D7_1007800 ← / → PF3D7_1007900 | conserved Plasmodium protein, unknown function/eukaryotic translation initiation factor 3 subunit D, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 358,940 | Δ2 bp | ? | 100% | intergenic (+477/+1684) | PF3D7_1008600 → / ← PF3D7_1008700 | zinc finger (CCCH type) protein, putative/tubulin beta chain |
| NC_037281 | 365,701 | 415,900 bp x 3 | 100% | amplification | PF3D7_1008800–PF3D7_1019300 | 270 genes PF3D7_1008800, PF3D7_1008900, PF3D7_1008900, PF3D7_1009000, PF3D7_1009100, PF3D7_1009200, PF3D7_1009300, PF3D7_1009400, PF3D7_1009500, PF3D7_1009500, PF3D7_1009500, PF3D7_1009500, PF3D7_1009600, PF3D7_1009700, PF3D7_1009800, PF3D7_1009800, PF3D7_1009900, PF3D7_1009900, PF3D7_1010000, PF3D7_1010000, PF3D7_1010100, PF3D7_1010200, PF3D7_1010300, PF3D7_1010300, PF3D7_1010300, PF3D7_1010400, PF3D7_1010400, PF3D7_1010400, PF3D7_1010400, PF3D7_1010400, PF3D7_1010400, PF3D7_1010500, PF3D7_1010500, PF3D7_1010500, PF3D7_1010500, PF3D7_1010500, PF3D7_1010500, PF3D7_1010500, PF3D7_1010500, PF3D7_1010600, PF3D7_1010600, PF3D7_1010700, PF3D7_1010700, PF3D7_1010700, PF3D7_1010700, PF3D7_1010700, PF3D7_1010700, PF3D7_1010700, PF3D7_1010800, PF3D7_1010900, PF3D7_1010900, PF3D7_1010900, PF3D7_1010900, PF3D7_1010900, PF3D7_1011000, PF3D7_1011000, PF3D7_1011000, PF3D7_1011000, PF3D7_1011100, PF3D7_1011100, PF3D7_1011200.1, PF3D7_1011200.1, PF3D7_1011200.1, PF3D7_1011200.1, PF3D7_1011300, PF3D7_1011400, PF3D7_1011500, PF3D7_1011600, PF3D7_1011700, PF3D7_1011800, PF3D7_1011900, PF3D7_1011900, PF3D7_1011900, PF3D7_1011900, PF3D7_1011900, PF3D7_1011900, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012000, PF3D7_1012100, PF3D7_1012100, PF3D7_1012200, PF3D7_1012200, PF3D7_1012300, PF3D7_1012300, PF3D7_1012400, PF3D7_1012400, PF3D7_1012400, PF3D7_1012500, PF3D7_1012600, PF3D7_1012700, PF3D7_1012700, PF3D7_1012700, PF3D7_1012800, PF3D7_1012900, PF3D7_1012900, PF3D7_1013000, PF3D7_1013000, PF3D7_1013000, PF3D7_1013000, PF3D7_1013100, PF3D7_1013100, PF3D7_1013200, PF3D7_1013300, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013400, PF3D7_1013500, PF3D7_1013500, PF3D7_1013500, PF3D7_1013500, PF3D7_1013600, PF3D7_1013700, PF3D7_1013700, PF3D7_1013700, PF3D7_1013800, PF3D7_1013800, PF3D7_1013800, PF3D7_1013800, PF3D7_1013800, PF3D7_1013900, PF3D7_1014000, PF3D7_1014000, PF3D7_1014000, PF3D7_1014000, PF3D7_1014000, PF3D7_1014000, PF3D7_1014000, PF3D7_1014100, PF3D7_1014200, PF3D7_1014200, PF3D7_1014300, PF3D7_1014300, PF3D7_1014400, PF3D7_1014500, PF3D7_1014600, PF3D7_1014700, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014800, PF3D7_1014900, PF3D7_1015000, PF3D7_1015100, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015200.1, PF3D7_1015300, PF3D7_1015400, PF3D7_1015500, PF3D7_1015600, PF3D7_1015600, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015700.1, PF3D7_1015800, PF3D7_1015800, PF3D7_1015800, PF3D7_1015800, PF3D7_1015800, PF3D7_1015900, PF3D7_1015900, PF3D7_1016000, PF3D7_1016100, PF3D7_1016200, PF3D7_1016300, PF3D7_1016300, PF3D7_1016400, PF3D7_1016400, PF3D7_1016400, PF3D7_1016500, PF3D7_1016500, PF3D7_1016600, PF3D7_1016600, PF3D7_1016700, PF3D7_1016700, PF3D7_1016800, PF3D7_1016800, PF3D7_1016900, PF3D7_1017000, PF3D7_1017100, PF3D7_1017200, PF3D7_1017200, PF3D7_1017300.1, PF3D7_1017300.1, PF3D7_1017300.1, PF3D7_1017400, PF3D7_1017400, PF3D7_1017400, PF3D7_1017400, PF3D7_1017400, PF3D7_1017400, PF3D7_1017400, PF3D7_1017400, PF3D7_1017500, PF3D7_1017500, PF3D7_1017500, PF3D7_1017600, PF3D7_1017700, PF3D7_1017800, PF3D7_1017800, PF3D7_1017800, PF3D7_1017900, PF3D7_1017900, PF3D7_1018000, PF3D7_1018100, PF3D7_1018200, PF3D7_1018200, PF3D7_1018300, PF3D7_1018400, PF3D7_1018400, PF3D7_1018400, PF3D7_1018400, PF3D7_1018500, PF3D7_1018500, PF3D7_1018500, PF3D7_1018500, PF3D7_1018500, PF3D7_1018600, PF3D7_1018700, PF3D7_1018800, PF3D7_1018800, PF3D7_1018900, PF3D7_1019000, PF3D7_1019000, PF3D7_1019100, PF3D7_1019200, PF3D7_1019300, PF3D7_1019300, PF3D7_1019300, PF3D7_1019300 |
|
| NC_037281 | 386,740 | C→T | ? | 100% | intergenic (‑1947/‑236) | PF3D7_1009500 ← / → PF3D7_1009600 | metalloprotease, putative/protein phosphatase PPM10, putative |
| NC_037281 | 391,492 | C→T | ? | 100% | intergenic (‑327/+2273) | PF3D7_1009700 ← / ← PF3D7_1009800 | tubulin‑‑tyrosine ligase, putative/conserved Plasmodium membrane protein, unknown function |
| NC_037281 | 391,496 | C→T | ? | 100% | intergenic (‑331/+2269) | PF3D7_1009700 ← / ← PF3D7_1009800 | tubulin‑‑tyrosine ligase, putative/conserved Plasmodium membrane protein, unknown function |
| NC_037281 | 391,500 | C→T | ? | 100% | intergenic (‑335/+2265) | PF3D7_1009700 ← / ← PF3D7_1009800 | tubulin‑‑tyrosine ligase, putative/conserved Plasmodium membrane protein, unknown function |
| NC_037281 | 399,184 | G→T | ? | 100% | intergenic (‑1191/‑23) | PF3D7_1009800 ← / → PF3D7_1009900 | conserved Plasmodium membrane protein, unknown function/heptatricopeptide repeat‑containing protein, putative |
| NC_037281 | 417,783 | C→A | ? | 100% | intergenic (+70/‑113) | PF3D7_1010500 → / → PF3D7_1010500 | ankyrin‑repeat protein, putative/ankyrin‑repeat protein, putative |
| NC_037281 | 431,116 | Δ1 bp | ? | 100% | intergenic (‑976/+1389) | PF3D7_1011000 ← / ← PF3D7_1011100 | uncharacterized protein/conserved Plasmodium protein, unknown function |
| NC_037281 | 437,538 | Δ2 bp | ? | 100% | intergenic (+57/‑86) | PF3D7_1011200.1 → / → PF3D7_1011200.1 | BET1‑like protein, putative/BET1‑like protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 460,947 | +TA | ? | 100% | intergenic (‑45/+153) | PF3D7_1011900 ← / ← PF3D7_1011900 | heme oxygenase/heme oxygenase |
| NC_037281 | 472,431 | G→T | ? | 100% | intergenic (+498/+115) | PF3D7_1012200 → / ← PF3D7_1012300 | rhoptry associated adhesin/cytochrome b‑c1 complex subunit 7, putative |
| NC_037281 | 523,512 | G→A | ? | 100% | intergenic (‑1260/‑3328) | PF3D7_1013400 ← / → PF3D7_1013500 | conserved Plasmodium protein, unknown function/phosphoinositide‑specific phospholipase C |
| NC_037281 | 554,556 | G→A | ? | 100% | intergenic (‑1985/‑604) | PF3D7_1014000 ← / → PF3D7_1014100 | GDP‑L‑fucose synthase/merozoite surface protein MSA180 |
| NC_037281 | 581,289 | +ATATAT | ? | 100% | intergenic (+811/+65) | PF3D7_1014500 → / ← PF3D7_1014600 | conserved Plasmodium protein, unknown function/transcriptional coactivator ADA2 |
| NC_037281 | 610,166 | T→C | ? | 100% | intergenic (‑2357/‑1047) | PF3D7_1014900 ← / → PF3D7_1015000 | conserved Plasmodium protein, unknown function/FAD synthetase, putative |
| NC_037281 | 668,856 | Δ2 bp | ? | 100% | intergenic (‑2202/+345) | PF3D7_1016600 ← / ← PF3D7_1016700 | Plasmodium exported protein (PHISTc), unknown function/Plasmodium exported protein (PHISTc), unknown function |
| NC_037281 | 688,899 | Δ1 bp | 100% | intergenic (+37/+989) | PF3D7_1017000 → / ← PF3D7_1017100 | DNA polymerase delta catalytic subunit/rhoptry neck protein 12 | |
| NC_037281 | 787,701 | 124,800 bp x 3 | 100% | amplification | PF3D7_1019500.1–PF3D7_1021900 | 123 genes PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019500.1, PF3D7_1019600, PF3D7_1019700, PF3D7_1019800, PF3D7_1019900, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020000, PF3D7_1020100, PF3D7_1020100, PF3D7_1020100, PF3D7_1020200, PF3D7_1020200, PF3D7_1020200, PF3D7_1020300, PF3D7_1020400, PF3D7_1020400, PF3D7_1020500, PF3D7_1020600, PF3D7_1020600, PF3D7_1020600, PF3D7_1020700, PF3D7_1020700, PF3D7_1020700, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020800, PF3D7_1020900, PF3D7_1020900, PF3D7_1020900, PF3D7_1020900, PF3D7_1020900, PF3D7_1021000, PF3D7_1021000, PF3D7_1021000, PF3D7_1021000, PF3D7_1021100, PF3D7_1021200, PF3D7_1021300, PF3D7_1021300, PF3D7_1021400, PF3D7_1021400, PF3D7_1021400, PF3D7_1021400, PF3D7_1021400, PF3D7_1021400, PF3D7_1021400, PF3D7_1021500, PF3D7_1021600, PF3D7_1021700, PF3D7_1021700, PF3D7_1021700, PF3D7_1021700, PF3D7_1021700, PF3D7_1021800, PF3D7_1021800, PF3D7_1021800, PF3D7_1021800, PF3D7_1021900 |
|
| NC_037281 | 795,476 | G→A | ? | 100% | intergenic (‑256/‑815) | PF3D7_1019500.1 ← / → PF3D7_1019600 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 819,324 | C→T | ? | 100% | intergenic (‑352/‑506) | PF3D7_1020200 ← / → PF3D7_1020300 | conserved Plasmodium protein, unknown function/cytoplasmic dynein intermediate chain, putative |
| NC_037281 | 819,328 | C→T | ? | 100% | intergenic (‑356/‑502) | PF3D7_1020200 ← / → PF3D7_1020300 | conserved Plasmodium protein, unknown function/cytoplasmic dynein intermediate chain, putative |
| NC_037281 | 827,973 | (T)26→25 | 100% | intergenic (+191/‑43) | PF3D7_1020600 → / → PF3D7_1020600 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium membrane protein, unknown function | |
| NC_037281 | 838,916 | A→T | ? | 100% | intergenic (+115/‑16) | PF3D7_1020700 → / → PF3D7_1020700 | uncharacterized protein/uncharacterized protein |
| NC_037281 | 839,658 | G→A | ? | 100% | K1256K (AAG→AAA) | PF3D7_1020700 → | uncharacterized protein |
| NC_037281 | 904,234 | Δ2 bp | ? | 100% | intergenic (‑626/+1238) | PF3D7_1021800 ← / ← PF3D7_1021900 | schizont egress antigen‑1/PHAX domain‑containing protein, putative |
| NC_037281 | 919,582 | Δ1 bp | ? | 100% | intergenic (‑7237/‑190) | PF3D7_1021900 ← / → PF3D7_1022000 | PHAX domain‑containing protein, putative/RNA‑binding protein, putative |
| NC_037281 | 919,701 | 87,900 bp x 3 | 100% | amplification | PF3D7_1022000–PF3D7_1023900 | 52 genes PF3D7_1022000, PF3D7_1022000, PF3D7_1022100, PF3D7_1022100, PF3D7_1022200, PF3D7_1022200, PF3D7_1022200, PF3D7_1022300, PF3D7_1022300, PF3D7_1022300, PF3D7_1022300, PF3D7_1022300, PF3D7_1022300, PF3D7_1022400, PF3D7_1022400, PF3D7_1022400, PF3D7_1022400, PF3D7_1022500, PF3D7_1022600, PF3D7_1022700, PF3D7_1022800, PF3D7_1022900, PF3D7_1022900, PF3D7_1022900, PF3D7_1022900, PF3D7_1023000, PF3D7_1023100, PF3D7_1023200, PF3D7_1023300, PF3D7_1023300, PF3D7_1023300, PF3D7_1023300, PF3D7_1023400, PF3D7_1023400, PF3D7_1023400, PF3D7_1023400, PF3D7_1023400, PF3D7_1023400, PF3D7_1023400, PF3D7_1023500, PF3D7_1023600, PF3D7_1023600, PF3D7_1023600, PF3D7_1023600, PF3D7_1023600, PF3D7_1023600, PF3D7_1023600, PF3D7_1023600, PF3D7_1023700, PF3D7_1023800, PF3D7_1023800, PF3D7_1023900 |
|
| NC_037281 | 1,014,701 | 17,000 bp x 3 | 100% | amplification | PF3D7_1024000–PF3D7_1024700 | PF3D7_1024000, PF3D7_1024100, PF3D7_1024200, PF3D7_1024300, PF3D7_1024400, PF3D7_1024400, PF3D7_1024500, PF3D7_1024600, PF3D7_1024600, PF3D7_1024600, PF3D7_1024600, PF3D7_1024600, PF3D7_1024600, PF3D7_1024700 | |
| NC_037281 | 1,034,801 | 14,700 bp x 4 | 100% | amplification | [PF3D7_1024800]–PF3D7_1025000 | [PF3D7_1024800], PF3D7_1024900, PF3D7_1025000, PF3D7_1025000, PF3D7_1025000, PF3D7_1025000, PF3D7_1025000, PF3D7_1025000 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 1,052,701 | 237,400 bp x 4 | 100% | amplification | PF3D7_1025100–PF3D7_1032000 | 210 genes PF3D7_1025100, PF3D7_1025200, PF3D7_1025300, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025400, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025500, PF3D7_1025600, PF3D7_1025700, PF3D7_1025800, PF3D7_1025800, PF3D7_1025800, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1025900, PF3D7_1026000, PF3D7_1026000, PF3D7_1026000, PF3D7_1026100, PF3D7_1026100, PF3D7_1026100, PF3D7_1026100, PF3D7_1026100, PF3D7_1026200, PF3D7_1026300, PF3D7_1026400, PF3D7_1026500, PF3D7_1026600, PF3D7_1026800, PF3D7_1026800, PF3D7_1026900, PF3D7_1027000, PF3D7_1027100, PF3D7_1027200, PF3D7_1027300, PF3D7_1027300, PF3D7_1027300, PF3D7_1027400, PF3D7_1027400, PF3D7_1027500, PF3D7_1027500, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027600, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027700.1, PF3D7_1027800, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1027900, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028000, PF3D7_1028100, PF3D7_1028200, PF3D7_1028300, PF3D7_1028400, PF3D7_1028500, PF3D7_1028500, PF3D7_1028500, PF3D7_1028600, PF3D7_1028600, PF3D7_1028600, PF3D7_1028600, PF3D7_1028700, PF3D7_1028800, PF3D7_1028800, PF3D7_1028900, PF3D7_1028900, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029100.1, PF3D7_1029200, PF3D7_1029300, PF3D7_1029400, PF3D7_1029500, PF3D7_1029600, PF3D7_1029700, PF3D7_1029700, PF3D7_1029700, PF3D7_1029800, PF3D7_1029900, PF3D7_1030000, PF3D7_1030000, PF3D7_1030000, PF3D7_1030000, PF3D7_1030100, PF3D7_1030100, PF3D7_1030100, PF3D7_1030100, PF3D7_1030200, PF3D7_1030300, PF3D7_1030400, PF3D7_1030400, PF3D7_1030500, PF3D7_1030600, PF3D7_1030700, PF3D7_1030800, PF3D7_1030900, PF3D7_1031000, PF3D7_1031100, PF3D7_1031100, PF3D7_1031200, PF3D7_1031300, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031400.1, PF3D7_1031500, PF3D7_1031500, PF3D7_1031500, PF3D7_1031500, PF3D7_1031500, PF3D7_1031500, PF3D7_1031600, PF3D7_1031700, PF3D7_1031700, PF3D7_1031700, PF3D7_1031700, PF3D7_1031800, PF3D7_1031800, PF3D7_1031800, PF3D7_1031900, PF3D7_1031900, PF3D7_1031900, PF3D7_1031900, PF3D7_1031900, PF3D7_1032000, PF3D7_1032000 |
|
| NC_037281 | 1,148,278 | A→T | ? | 100% | intergenic (+65/+38) | PF3D7_1027500 → / ← PF3D7_1027600 | conserved Plasmodium protein, unknown function/meiotic recombination protein SPO11‑2, putative |
| NC_037281 | 1,159,781 | Δ1 bp | 100% | intergenic (+801/‑250) | PF3D7_1027900 → / → PF3D7_1028000 | palmitoyltransferase DHHC10, putative/methyltransferase, putative | |
| NC_037281 | 1,195,127 | C→T | ? | 100% | intergenic (+111/‑550) | PF3D7_1029100.1 → / → PF3D7_1029200 | conserved Plasmodium protein, unknown function/WD repeat‑containing protein, putative |
| NC_037281 | 1,195,131 | C→T | ? | 100% | intergenic (+115/‑546) | PF3D7_1029100.1 → / → PF3D7_1029200 | conserved Plasmodium protein, unknown function/WD repeat‑containing protein, putative |
| NC_037281 | 1,195,135 | C→T | ? | 100% | intergenic (+119/‑542) | PF3D7_1029100.1 → / → PF3D7_1029200 | conserved Plasmodium protein, unknown function/WD repeat‑containing protein, putative |
| NC_037281 | 1,195,139 | C→T | ? | 100% | intergenic (+123/‑538) | PF3D7_1029100.1 → / → PF3D7_1029200 | conserved Plasmodium protein, unknown function/WD repeat‑containing protein, putative |
| NC_037281 | 1,197,807 | C→T | ? | 100% | intergenic (+463/+18) | PF3D7_1029200 → / ← PF3D7_1029300 | WD repeat‑containing protein, putative/conserved protein, unknown function |
| NC_037281 | 1,197,816 | C→T | ? | 100% | intergenic (+472/+9) | PF3D7_1029200 → / ← PF3D7_1029300 | WD repeat‑containing protein, putative/conserved protein, unknown function |
| NC_037281 | 1,233,563 | +TTTA | 100% | intergenic (‑1650/+104) | PF3D7_1030200 ← / ← PF3D7_1030300 | claudin‑like apicomplexan microneme protein, putative/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 1,237,056 | G→A | ? | 100% | intergenic (‑54/+4711) | PF3D7_1030300 ← / ← PF3D7_1030400 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| NC_037281 | 1,293,301 | 37,200 bp x 3 | 100% | amplification | PF3D7_1032100–PF3D7_1033100 | 26 genes PF3D7_1032100, PF3D7_1032200, PF3D7_1032200, PF3D7_1032200, PF3D7_1032200, PF3D7_1032200, PF3D7_1032300, PF3D7_1032400, PF3D7_1032400, PF3D7_1032400, PF3D7_1032400, PF3D7_1032400, PF3D7_1032400, PF3D7_1032400, PF3D7_1032500, PF3D7_1032500, PF3D7_1032500, PF3D7_1032600, PF3D7_1032700, PF3D7_1032800, PF3D7_1032800, PF3D7_1032800, PF3D7_1032800, PF3D7_1032900, PF3D7_1033000, PF3D7_1033100 |
|
| NC_037281 | 1,307,719 | A→T | 100% | intergenic (‑187/‑1154) | PF3D7_1032500 ← / → PF3D7_1032600 | DER1‑like protein, putative/uncharacterized protein | |
| NC_037281 | 1,324,045 | T→C | ? | 100% | intergenic (+666/+87) | PF3D7_1033000 → / ← PF3D7_1033100 | heptatricopeptide repeat‑containing protein HPR1, putative/S‑adenosylmethionine decarboxylase/ornithine decarboxylase |
| NC_037281 | 1,332,528 | Δ5 bp | 100% | intergenic (‑4092/‑2690) | PF3D7_1033100 ← / → PF3D7_1033200 | S‑adenosylmethionine decarboxylase/ornithine decarboxylase/early transcribed membrane protein 10.2 | |
| NC_037281 | 1,332,529 | Δ1 bp | 100% | Δ | intergenic (‑4093/‑2693) | PF3D7_1033100 ← / → PF3D7_1033200 | S‑adenosylmethionine decarboxylase/ornithine decarboxylase/early transcribed membrane protein 10.2 |
| NC_037281 | 1,332,530 | Δ3 bp | 100% | Δ | intergenic (‑4094/‑2690) | PF3D7_1033100 ← / → PF3D7_1033200 | S‑adenosylmethionine decarboxylase/ornithine decarboxylase/early transcribed membrane protein 10.2 |
| NC_037281 | 1,334,518 | +A | 100% | intergenic (‑6082/‑704) | PF3D7_1033100 ← / → PF3D7_1033200 | S‑adenosylmethionine decarboxylase/ornithine decarboxylase/early transcribed membrane protein 10.2 | |
| NC_037281 | 1,335,101 | 80,200 bp x 3 | 100% | amplification | PF3D7_1033200–PF3D7_1035700 | 63 genes PF3D7_1033200, PF3D7_1033300, PF3D7_1033300, PF3D7_1033300, PF3D7_1033400, PF3D7_1033500, PF3D7_1033600, PF3D7_1033700, PF3D7_1033700, PF3D7_1033700, PF3D7_1033800, PF3D7_1033800, PF3D7_1033800, PF3D7_1033800, PF3D7_1033800, PF3D7_1033800, PF3D7_1033800, PF3D7_1033800, PF3D7_1033900, PF3D7_1033900, PF3D7_1033900, PF3D7_1033900, PF3D7_1033900, PF3D7_1034000, PF3D7_1034100, PF3D7_1034100, PF3D7_1034100, PF3D7_1034100, PF3D7_1034100, PF3D7_1034200, PF3D7_1034300, PF3D7_1034400, PF3D7_1034500, PF3D7_1034500, PF3D7_1034500, PF3D7_1034500, PF3D7_1034500, PF3D7_1034500, PF3D7_1034500, PF3D7_1034500, PF3D7_1034600, PF3D7_1034700, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034800, PF3D7_1034900, PF3D7_1035000, PF3D7_1035100, PF3D7_1035200, PF3D7_1035300, PF3D7_1035400, PF3D7_1035500, PF3D7_1035600, PF3D7_1035700 |
|
| NC_037281 | 1,348,408 | C→T | ? | 100% | intergenic (‑1511/‑25) | PF3D7_1033600 ← / → PF3D7_1033700 | pre‑mRNA‑splicing factor CEF1, putative/bromodomain protein 1 |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 1,386,122 | C→A | ? | 100% | intergenic (+3/+527) | PF3D7_1034900 → / ← PF3D7_1035000 | methionine‑‑tRNA ligase/U2 snRNA/tRNA pseudouridine synthase, putative |
| NC_037281 | 1,409,053 | Δ1 bp | ? | 100% | intergenic (+662/‑228) | PF3D7_1035500 → / → PF3D7_1035600 | merozoite surface protein 6/merozoite surface protein |
| NC_037281 | 1,420,801 | 37,200 bp x 4 | 100% | amplification | [PF3D7_1035800]–[PF3D7_1036900] | 29 genes [PF3D7_1035800], PF3D7_1035900, PF3D7_1036000, PF3D7_1036300, PF3D7_1036400, PF3D7_1036500, PF3D7_1036600.1, PF3D7_1036600.1, PF3D7_1036600.1, PF3D7_1036700, PF3D7_1036700, PF3D7_1036700, PF3D7_1036700, PF3D7_1036700, PF3D7_1036700, PF3D7_1036700, PF3D7_1036700, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036800, PF3D7_1036900, PF3D7_1036900, [PF3D7_1036900] |
|
| NC_037281 | 1,445,099 | +AT | 100% | intergenic (+134/‑86) | PF3D7_1036600.1 → / → PF3D7_1036600.1 | conserved protein, unknown function/conserved protein, unknown function | |
| NC_037281 | 1,462,501 | 100,500 bp x 5 | 100% | amplification | PF3D7_1037000–[PF3D7_1038900] | 77 genes PF3D7_1037000, PF3D7_1037000, PF3D7_1037000, PF3D7_1037100, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037200, PF3D7_1037300, PF3D7_1037400, PF3D7_1037500, PF3D7_1037600, PF3D7_1037600, PF3D7_1037600, PF3D7_1037700, PF3D7_1037700, PF3D7_1037700, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037800, PF3D7_1037900, PF3D7_1037900, PF3D7_1037900, PF3D7_1037900, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038000.1, PF3D7_1038100, PF3D7_1038200, PF3D7_1038200, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038300, PF3D7_1038400, PF3D7_1038400, PF3D7_1038500, PF3D7_1038500, PF3D7_1038600, PF3D7_1038600, PF3D7_1038700, PF3D7_1038700, PF3D7_1038800, PF3D7_1038800, [PF3D7_1038900] |
|
| NC_037281 | 1,479,200 | Δ2 bp | ? | 100% | intergenic (‑355/+2562) | PF3D7_1037300 ← / ← PF3D7_1037400 | ADP/ATP transporter on adenylate translocase/conserved Plasmodium protein, unknown function |
| NC_037281 | 1,544,067 | A→G | 100% | I8312V (ATA→GTA) | PF3D7_1038400 → | gametocyte‑specific protein | |
| NC_037281 | 1,557,483 | Δ1 bp | ? | 100% | intergenic (‑1781/‑333) | PF3D7_1038700 ← / → PF3D7_1038800 | Plasmodium exported protein, unknown function/RESA‑like protein with PHIST and DnaJ domains |
| NC_037281 | 1,563,001 | Δ11,600 bp | ? | 100% | [PF3D7_1038900]–PF3D7_1039000 | [PF3D7_1038900], PF3D7_1039000, PF3D7_1039000, PF3D7_1039000 | |
| NC_037281 | 1,583,550 | T→A | 100% | intergenic (+11735/+8028) | PF3D7_1039000 → / ← PF3D7_1039700 | serine/threonine protein kinase, FIKK family/Pfmc‑2TM Maurer's cleft two transmembrane protein | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 1,601,801 | Δ53,500 bp | 100% | PF3D7_1040100–PF3D7_1041300 | 26 genes PF3D7_1040100, PF3D7_1040100, PF3D7_1040200, PF3D7_1040200, PF3D7_1040300, PF3D7_1040300, PF3D7_1040400, PF3D7_1040400, PF3D7_1040500, PF3D7_1040500, PF3D7_1040600, PF3D7_1040600, PF3D7_1040700, PF3D7_1040700, PF3D7_1040800, PF3D7_1040800, PF3D7_1040900, PF3D7_1040900, PF3D7_1041000, PF3D7_1041000, PF3D7_1041100, PF3D7_1041100, PF3D7_1041200, PF3D7_1041200, PF3D7_1041300, PF3D7_1041300 |
||
| NC_037281 | 1,661,151 | G→A | 100% | intergenic (‑11203/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,165 | A→G | 100% | intergenic (‑11217/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,197 | A→G | 100% | intergenic (‑11249/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,206 | C→A | 100% | intergenic (‑11258/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,459 | T→A | 100% | intergenic (‑11511/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,467 | A→G | 100% | intergenic (‑11519/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,473 | A→T | 100% | intergenic (‑11525/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,661,491 | G→T | 100% | intergenic (‑11543/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,663,417 | C→T | 100% | intergenic (‑13469/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037281 | 1,663,425 | G→C | 100% | intergenic (‑13477/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,663,427 | G→C | 100% | intergenic (‑13479/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,663,467 | G→T | 100% | intergenic (‑13519/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,663,499 | 2 bp→GT | 100% | intergenic (‑13551/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,663,503 | A→T | 100% | intergenic (‑13555/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,663,505 | 2 bp→TA | 100% | intergenic (‑13557/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,675,671 | 2 bp→AG | 100% | intergenic (‑25723/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,675,682 | 2 bp→GT | 100% | intergenic (‑25734/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,675,692 | T→C | 100% | intergenic (‑25744/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037281 | 1,686,927 | C→T | ? | 100% | intergenic (‑36979/–) | PF3D7_1041300 ← / – | erythrocyte membrane protein 1, PfEMP1/– |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 1 | 16,300 bp x 12 | 100% | amplification | – / → PF3D7_1100100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_037282 | 254 | G→A | 100% | intergenic (–/‑23906) | – / → PF3D7_1100100 | –/erythrocyte membrane protein 1, PfEMP1 | |
| NC_037282 | 16,301 | Δ25,700 bp | 100% | PF3D7_1100100–[PF3D7_1100200] | PF3D7_1100100, PF3D7_1100100, PF3D7_1100200, [PF3D7_1100200] | ||
| NC_037282 | 16,308 | C→T | 100% | Δ | intergenic (–/‑7852) | – / → PF3D7_1100100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_037282 | 42,001 | 7,200 bp x 4 | 100% | amplification | [PF3D7_1100200]–[PF3D7_1100400] | [PF3D7_1100200], PF3D7_1100300, PF3D7_1100300, PF3D7_1100400, [PF3D7_1100400] | |
| NC_037282 | 51,501 | 13,300 bp x 3 | 100% | amplification | PF3D7_1100500–PF3D7_1100800 | PF3D7_1100500, PF3D7_1100500, PF3D7_1100800, PF3D7_1100800 | |
| NC_037282 | 66,601 | 55,000 bp x 4 | 100% | amplification | PF3D7_1101100–PF3D7_1102500 | 20 genes PF3D7_1101100, PF3D7_1101100, PF3D7_1101200, PF3D7_1101200, PF3D7_1101300, PF3D7_1101300, PF3D7_1101500, PF3D7_1101500, PF3D7_1101600, PF3D7_1101600, PF3D7_1101700, PF3D7_1101700, PF3D7_1101800, PF3D7_1102200, PF3D7_1102200, PF3D7_1102300, PF3D7_1102300, PF3D7_1102400, PF3D7_1102500, PF3D7_1102500 |
|
| NC_037282 | 84,013 | +AAGA | 100% | intergenic (+598/‑1616) | PF3D7_1101600 → / → PF3D7_1101700 | exported protein family 3/Pfmc‑2TM Maurer's cleft two transmembrane protein | |
| NC_037282 | 128,701 | 58,700 bp x 3 | 100% | amplification | PF3D7_1102700–PF3D7_1104200 | 40 genes PF3D7_1102700, PF3D7_1102800, PF3D7_1102900, PF3D7_1102900, PF3D7_1103000, PF3D7_1103000, PF3D7_1103100, PF3D7_1103100, PF3D7_1103200, PF3D7_1103300, PF3D7_1103400, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103500, PF3D7_1103600, PF3D7_1103700, PF3D7_1103800, PF3D7_1103900, PF3D7_1104000, PF3D7_1104000, PF3D7_1104000, PF3D7_1104100, PF3D7_1104100, PF3D7_1104100, PF3D7_1104100, PF3D7_1104200, PF3D7_1104200, PF3D7_1104200, PF3D7_1104200, PF3D7_1104200 |
|
| NC_037282 | 191,401 | 3,000 bp x 3 | 100% | amplification | [PF3D7_1104300]–PF3D7_1104300 | [PF3D7_1104300], PF3D7_1104300 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 194,730 | C→T | ? | 100% | intergenic (‑372/‑2037) | PF3D7_1104300 ← / → PF3D7_1104400 | conserved Plasmodium protein, unknown function/uncharacterized protein |
| NC_037282 | 196,801 | 46,800 bp x 2 | 100% | duplication | [PF3D7_1104400]–PF3D7_1105600 | 48 genes [PF3D7_1104400], PF3D7_1104400, PF3D7_1104500, PF3D7_1104600, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104700.1, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104800, PF3D7_1104900, PF3D7_1105000, PF3D7_1105100, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105200, PF3D7_1105300, PF3D7_1105300, PF3D7_1105400, PF3D7_1105400, PF3D7_1105500, PF3D7_1105500, PF3D7_1105500, PF3D7_1105600 |
|
| NC_037282 | 235,452 | Δ1 bp | ? | 100% | intergenic (‑1214/+145) | PF3D7_1105300 ← / ← PF3D7_1105400 | conserved Plasmodium protein, unknown function/40S ribosomal protein S4, putative |
| NC_037282 | 245,955 | C→T | ? | 100% | intergenic (‑2438/‑1496) | PF3D7_1105600 ← / → PF3D7_1105700 | translocon component PTEX88/uncharacterized protein |
| NC_037282 | 247,401 | 63,900 bp x 3 | 100% | amplification | PF3D7_1105700–PF3D7_1107300 | 66 genes PF3D7_1105700, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105800, PF3D7_1105900, PF3D7_1106000, PF3D7_1106100, PF3D7_1106100, PF3D7_1106100, PF3D7_1106100, PF3D7_1106200, PF3D7_1106200, PF3D7_1106200, PF3D7_1106300, PF3D7_1106300, PF3D7_1106300, PF3D7_1106300, PF3D7_1106300, PF3D7_1106300, PF3D7_1106300, PF3D7_1106400, PF3D7_1106500, PF3D7_1106500, PF3D7_1106500, PF3D7_1106600, PF3D7_1106700, PF3D7_1106800, PF3D7_1106800, PF3D7_1106800, PF3D7_1106800, PF3D7_1106800, PF3D7_1106800, PF3D7_1106800, PF3D7_1106800, PF3D7_1106900, PF3D7_1106900, PF3D7_1107000, PF3D7_1107000, PF3D7_1107000, PF3D7_1107000, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107100, PF3D7_1107200, PF3D7_1107200, PF3D7_1107200, PF3D7_1107200, PF3D7_1107200, PF3D7_1107200, PF3D7_1107200, PF3D7_1107200, PF3D7_1107300 |
|
| NC_037282 | 255,017 | C→T | ? | 100% | intergenic (+96/+697) | PF3D7_1105900 → / ← PF3D7_1106000 | conserved Plasmodium membrane protein, unknown function/RuvB‑like helicase 2 |
| NC_037282 | 287,767 | Δ1 bp | 100% | intergenic (+84/‑31) | PF3D7_1106800 → / → PF3D7_1106800 | pseudo‑tyrosine kinase‑like protein/pseudo‑tyrosine kinase‑like protein | |
| NC_037282 | 294,601 | Δ5 bp | ? | 100% | intergenic (+36/‑82) | PF3D7_1107100 → / → PF3D7_1107100 | nucleic acid binding protein, putative/nucleic acid binding protein, putative |
| NC_037282 | 317,801 | 31,900 bp x 3 | 100% | amplification | PF3D7_1107400–PF3D7_1107900 | PF3D7_1107400, PF3D7_1107500, PF3D7_1107500, PF3D7_1107500, PF3D7_1107500, PF3D7_1107500, PF3D7_1107600, PF3D7_1107700, PF3D7_1107800, PF3D7_1107800, PF3D7_1107900 | |
| NC_037282 | 352,001 | 245,300 bp x 3 | 100% | amplification | PF3D7_1108000–PF3D7_1115800 | 207 genes PF3D7_1108000, PF3D7_1108100, PF3D7_1108100, PF3D7_1108100, PF3D7_1108200, PF3D7_1108300, PF3D7_1108300, PF3D7_1108400, PF3D7_1108500, PF3D7_1108500, PF3D7_1108500, PF3D7_1108600, PF3D7_1108700, PF3D7_1108800, PF3D7_1108800, PF3D7_1108900, PF3D7_1109000, PF3D7_1109100, PF3D7_1109100, PF3D7_1109200, PF3D7_1109200, PF3D7_1109200, PF3D7_1109200, PF3D7_1109300, PF3D7_1109400, PF3D7_1109400, PF3D7_1109500, PF3D7_1109400, PF3D7_1109400, PF3D7_1109600, PF3D7_1109400, PF3D7_1109700, PF3D7_1109400, PF3D7_1109800, PF3D7_1109900, PF3D7_1109900, PF3D7_1110000, PF3D7_1110000, PF3D7_1110100, PF3D7_1110200, PF3D7_1110200, PF3D7_1110300, PF3D7_1110300, PF3D7_1110300, PF3D7_1110300, PF3D7_1110400, PF3D7_1110400, PF3D7_1110400, PF3D7_1110500, PF3D7_1110500, PF3D7_1110600, PF3D7_1110600, PF3D7_1110600, PF3D7_1110600, PF3D7_1110600, PF3D7_1110700, PF3D7_1110700, PF3D7_1110700, PF3D7_1110700, PF3D7_1110800, PF3D7_1110800, PF3D7_1110800, PF3D7_1110800, PF3D7_1110800, PF3D7_1110800, PF3D7_1110800, PF3D7_1110900, PF3D7_1111000, PF3D7_1111100, PF3D7_1111200, PF3D7_1111200, PF3D7_1111300, PF3D7_1111400, PF3D7_1111500, PF3D7_1111500, PF3D7_1111600, PF3D7_1111600, PF3D7_1111600, PF3D7_1111600, PF3D7_1111700, PF3D7_1111800, PF3D7_1111800, PF3D7_1111900, PF3D7_1111900, PF3D7_1111900, PF3D7_1112000, PF3D7_1112000, PF3D7_1112000, PF3D7_1112000, PF3D7_1112100, PF3D7_1112200, PF3D7_1112300, PF3D7_1112300, PF3D7_1112400, PF3D7_1112500, PF3D7_1112600, PF3D7_1112700, PF3D7_1112700, PF3D7_1112700, PF3D7_1112700, PF3D7_1112800, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1112900, PF3D7_1113000, PF3D7_1113000, PF3D7_1113000, PF3D7_1113000, PF3D7_1113000, PF3D7_1113000, PF3D7_1113000, PF3D7_1113100, PF3D7_1113200, PF3D7_1113200, PF3D7_1113300, PF3D7_1113400, PF3D7_1113400, PF3D7_1113400, PF3D7_1113400, PF3D7_1113500, PF3D7_1113600, PF3D7_1113700, PF3D7_1113800, PF3D7_1113900, PF3D7_1114000, PF3D7_1114000, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114100.1, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114200, PF3D7_1114300, PF3D7_1114400, PF3D7_1114500, PF3D7_1114600, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114700, PF3D7_1114800, PF3D7_1114800, PF3D7_1114800, PF3D7_1114800, PF3D7_1114800, PF3D7_1114800, PF3D7_1114800, PF3D7_1114800, PF3D7_1114900, PF3D7_1115000, PF3D7_1115000, PF3D7_1115000, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115100, PF3D7_1115200, PF3D7_1115200, PF3D7_1115200, PF3D7_1115200, PF3D7_1115200, PF3D7_1115200, PF3D7_1115200, PF3D7_1115300, PF3D7_1115400, PF3D7_1115500, PF3D7_1115500, PF3D7_1115500, PF3D7_1115500, PF3D7_1115600, PF3D7_1115600, PF3D7_1115600, PF3D7_1115700, PF3D7_1115800 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 377,702 | Δ2 bp | ? | 100% | intergenic (‑2842/‑37) | PF3D7_1108700 ← / → PF3D7_1108800 | heat shock protein J2/conserved Plasmodium protein, unknown function |
| NC_037282 | 382,050 | Δ2 bp | ? | 100% | intergenic (‑791/+518) | PF3D7_1109000 ← / ← PF3D7_1109100 | small nucleolar RNA snoR07/conserved Plasmodium protein, unknown function |
| NC_037282 | 391,903 | Δ2 bp | ? | 100% | intergenic (‑63/+61) | PF3D7_1109600 ← / ← PF3D7_1109400 | small nucleolar RNA SNORD127/essential nuclear protein 1, putative |
| NC_037282 | 398,323 | Δ2 bp | ? | 100% | intergenic (+548/‑335) | PF3D7_1109900 → / → PF3D7_1110000 | 60S ribosomal protein L36/conserved Plasmodium protein, unknown function |
| NC_037282 | 539,659 | Δ1 bp | ? | 100% | intergenic (+1362/‑244) | PF3D7_1114000 → / → PF3D7_1114100.1 | dynein light chain Tctex‑type, putative/rhomboid protease ROM1 |
| NC_037282 | 539,799 | G→T | ? | 100% | intergenic (+1502/‑104) | PF3D7_1114000 → / → PF3D7_1114100.1 | dynein light chain Tctex‑type, putative/rhomboid protease ROM1 |
| NC_037282 | 542,854 | C→T | ? | 100% | intergenic (‑94/+19) | PF3D7_1114200 ← / ← PF3D7_1114200 | GTPase‑activating protein, putative/GTPase‑activating protein, putative |
| NC_037282 | 551,187 | Δ6 bp | ? | 100% | intergenic (+35/‑1067) | PF3D7_1114500 → / → PF3D7_1114600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037282 | 577,178 | G→T | ? | 100% | intergenic (+276/‑15) | PF3D7_1115200 → / → PF3D7_1115200 | histone‑lysine N‑methyltransferase SET7/histone‑lysine N‑methyltransferase SET7 |
| NC_037282 | 600,401 | 32,500 bp x 4 | 100% | amplification | [PF3D7_1115900]–PF3D7_1116700 | 37 genes [PF3D7_1115900], PF3D7_1115900, PF3D7_1115900, PF3D7_1115900, PF3D7_1115900, PF3D7_1115900, PF3D7_1115900, PF3D7_1115900, PF3D7_1115900, PF3D7_1116000, PF3D7_1116000, PF3D7_1116000, PF3D7_1116100, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116200.1, PF3D7_1116300, PF3D7_1116300, PF3D7_1116300, PF3D7_1116300, PF3D7_1116300, PF3D7_1116300, PF3D7_1116400, PF3D7_1116500, PF3D7_1116600, PF3D7_1116600, PF3D7_1116700 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 617,197 | C→A | ? | 100% | intergenic (‑11/‑1115) | PF3D7_1116200.1 ← / → PF3D7_1116300 | pyridoxine biosynthesis protein PDX2/peptidyl‑prolyl cis‑trans isomerase |
| NC_037282 | 636,101 | 48,600 bp x 3 | 100% | amplification | [PF3D7_1116800]–PF3D7_1118000 | 40 genes [PF3D7_1116800], PF3D7_1116800, PF3D7_1116800, PF3D7_1116800, PF3D7_1116900, PF3D7_1116900, PF3D7_1116900, PF3D7_1116900, PF3D7_1116900, PF3D7_1116900, PF3D7_1116900, PF3D7_1117000, PF3D7_1117000, PF3D7_1117000, PF3D7_1117000, PF3D7_1117000, PF3D7_1117100, PF3D7_1117200, PF3D7_1117200, PF3D7_1117300, PF3D7_1117400, PF3D7_1117500, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117600.1, PF3D7_1117700, PF3D7_1117700, PF3D7_1117800, PF3D7_1117900, PF3D7_1117900, PF3D7_1118000, PF3D7_1118000 |
|
| NC_037282 | 661,959 | C→T | ? | 100% | intergenic (+1539/‑41) | PF3D7_1117200 → / → PF3D7_1117300 | conserved Plasmodium protein, unknown function/conserved protein, unknown function |
| NC_037282 | 682,888 | G→A | ? | 100% | intergenic (+11/‑104) | PF3D7_1117900 → / → PF3D7_1117900 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037282 | 687,201 | 4,500 bp x 4 | 100% | amplification | PF3D7_1118100–PF3D7_1118200 | PF3D7_1118100, PF3D7_1118100, PF3D7_1118200 | |
| NC_037282 | 694,801 | 121,500 bp x 3 | 100% | amplification | [PF3D7_1118300]–[PF3D7_1121600] | 98 genes [PF3D7_1118300], PF3D7_1118400, PF3D7_1118500, PF3D7_1118600, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118700, PF3D7_1118800, PF3D7_1118800, PF3D7_1118800, PF3D7_1118800, PF3D7_1118800, PF3D7_1118800, PF3D7_1118800, PF3D7_1118900, PF3D7_1118900, PF3D7_1118900, PF3D7_1118900, PF3D7_1118900, PF3D7_1118900, PF3D7_1118900, PF3D7_1119000, PF3D7_1119100, PF3D7_1119100, PF3D7_1119100, PF3D7_1119100, PF3D7_1119200, PF3D7_1119200, PF3D7_1119300, PF3D7_1119400, PF3D7_1119500, PF3D7_1119500, PF3D7_1119500, PF3D7_1119600, PF3D7_1119700, PF3D7_1119800, PF3D7_1119900, PF3D7_1120000, PF3D7_1120000, PF3D7_1120000, PF3D7_1120000, PF3D7_1120000, PF3D7_1120000, PF3D7_1120100, PF3D7_1120100, PF3D7_1120100, PF3D7_1120200, PF3D7_1120200, PF3D7_1120300, PF3D7_1120300, PF3D7_1120400, PF3D7_1120400, PF3D7_1120500, PF3D7_1120500, PF3D7_1120600, PF3D7_1120600, PF3D7_1120600, PF3D7_1120600, PF3D7_1120600, PF3D7_1120600, PF3D7_1120700, PF3D7_1120800, PF3D7_1120900, PF3D7_1121000, PF3D7_1121000, PF3D7_1121000, PF3D7_1121000, PF3D7_1121000, PF3D7_1121000, PF3D7_1121100, PF3D7_1121100, PF3D7_1121100, PF3D7_1121100, PF3D7_1121200, PF3D7_1121200, PF3D7_1121300, PF3D7_1121300, PF3D7_1121400, PF3D7_1121400, PF3D7_1121500, PF3D7_1121600, PF3D7_1121600, [PF3D7_1121600] |
|
| NC_037282 | 713,535 | +T | 100% | intergenic (‑672/+582) | PF3D7_1118700 ← / ← PF3D7_1118800 | myosin light chain B/actin‑related protein 2/3 complex subunit 1, putative | |
| NC_037282 | 718,037 | C→T | ? | 100% | intergenic (+89/‑82) | PF3D7_1118900 → / → PF3D7_1118900 | conserved protein, unknown function/conserved protein, unknown function |
| NC_037282 | 765,241 | Δ2 bp | ? | 100% | intergenic (+44/‑297) | PF3D7_1120200 → / → PF3D7_1120200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037282 | 766,743 | (A)19→18 | 100% | intergenic (+1118/‑16) | PF3D7_1120200 → / → PF3D7_1120300 | conserved Plasmodium protein, unknown function/CorA‑like Mg2+ transporter protein, putative | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 770,266 | Δ2 bp | ? | 100% | intergenic (‑84/+116) | PF3D7_1120400 ← / ← PF3D7_1120400 | alpha/beta hydrolase fold domain containing protein, putative/alpha/beta hydrolase fold domain containing protein, putative |
| NC_037282 | 784,513 | C→T | ? | 100% | intergenic (‑874/+79) | PF3D7_1120600 ← / ← PF3D7_1120700 | DDRGK domain‑containing protein, putative/conserved Plasmodium protein, unknown function |
| NC_037282 | 784,525 | Δ2 bp | ? | 100% | intergenic (‑886/+66) | PF3D7_1120600 ← / ← PF3D7_1120700 | DDRGK domain‑containing protein, putative/conserved Plasmodium protein, unknown function |
| NC_037282 | 791,370 | A→T | ? | 100% | intergenic (+762/‑827) | PF3D7_1120900 → / → PF3D7_1121000 | heat shock factor‑binding protein 1/palmitoyltransferase DHHC3 |
| NC_037282 | 791,375 | A→T | ? | 100% | intergenic (+767/‑822) | PF3D7_1120900 → / → PF3D7_1121000 | heat shock factor‑binding protein 1/palmitoyltransferase DHHC3 |
| NC_037282 | 820,301 | 11,600 bp x 3 | 100% | amplification | [PF3D7_1121700]–PF3D7_1121800 | [PF3D7_1121700], PF3D7_1121800 | |
| NC_037282 | 831,901 | Δ2,500 bp | 100% | intergenic (‑2588/+1489) | PF3D7_1121800 ← / ← PF3D7_1121900 | peptidase M16, putative/serine/threonine protein kinase, putative | |
| NC_037282 | 834,401 | 483,100 bp x 3 | 100% | amplification | PF3D7_1121900–PF3D7_1133900 | 344 genes PF3D7_1121900, PF3D7_1122000, PF3D7_1122000, PF3D7_1122000, PF3D7_1122100, PF3D7_1122100, PF3D7_1122100, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122200, PF3D7_1122300, PF3D7_1122400, PF3D7_1122400, PF3D7_1122400, PF3D7_1122400, PF3D7_1122400, PF3D7_1122400, PF3D7_1122400, PF3D7_1122500, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122600, PF3D7_1122700, PF3D7_1122800, PF3D7_1122800, PF3D7_1122800, PF3D7_1122800, PF3D7_1122800, PF3D7_1122800, PF3D7_1122900, PF3D7_1122900, PF3D7_1122900, PF3D7_1123000, PF3D7_1123100, PF3D7_1123100, PF3D7_1123200, PF3D7_1123200, PF3D7_1123200, PF3D7_1123300, PF3D7_1123400, PF3D7_1123400, PF3D7_1123500, PF3D7_1123600, PF3D7_1123700, PF3D7_1123700, PF3D7_1123800, PF3D7_1123900, PF3D7_1123900, PF3D7_1123900, PF3D7_1124000, PF3D7_1124000, PF3D7_1124000, PF3D7_1124000, PF3D7_1124000, PF3D7_1124100, PF3D7_1124200, PF3D7_1124200, PF3D7_1124200, PF3D7_1124200, PF3D7_1124300, PF3D7_1124300, PF3D7_1124300, PF3D7_1124400, PF3D7_1124400, PF3D7_1124400, PF3D7_1124500, PF3D7_1124600, PF3D7_1124700, PF3D7_1124700, PF3D7_1124800, PF3D7_1124800, PF3D7_1124800, PF3D7_1124900, PF3D7_1124900, PF3D7_1124900, PF3D7_1124900, PF3D7_1125000, PF3D7_1125000, PF3D7_1125000, PF3D7_1125000, PF3D7_1125000, PF3D7_1125000, PF3D7_1125000, PF3D7_1125100, PF3D7_1125200, PF3D7_1125200, PF3D7_1125200, PF3D7_1125200, PF3D7_1125300, PF3D7_1125400, PF3D7_1125400, PF3D7_1125500, PF3D7_1125600, PF3D7_1125600, PF3D7_1125700, PF3D7_1125700, PF3D7_1125700, PF3D7_1125700, PF3D7_1125700, PF3D7_1125700, PF3D7_1125800, PF3D7_1125800, PF3D7_1125800, PF3D7_1125800, PF3D7_1125900, PF3D7_1126000, PF3D7_1126100, PF3D7_1126100, PF3D7_1126200, PF3D7_1126200, PF3D7_1126300.1, PF3D7_1126300.1, PF3D7_1126300.1, PF3D7_1126300.1, PF3D7_1126300.1, PF3D7_1126400, PF3D7_1126400, PF3D7_1126400, PF3D7_1126500, PF3D7_1126600, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126700, PF3D7_1126800, PF3D7_1126900, PF3D7_1126900, PF3D7_1126900, PF3D7_1126900, PF3D7_1127000, PF3D7_1127000, PF3D7_1127000, PF3D7_1127000, PF3D7_1127000, PF3D7_1127000, PF3D7_1127000, PF3D7_1127100, PF3D7_1127200, PF3D7_1127200, PF3D7_1127300, PF3D7_1127400, PF3D7_1127400, PF3D7_1127400, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127500, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127600, PF3D7_1127700, PF3D7_1127700, PF3D7_1127700, PF3D7_1127800, PF3D7_1127900, PF3D7_1127900, PF3D7_1127900, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128000.1, PF3D7_1128100, PF3D7_1128100, PF3D7_1128100, PF3D7_1128200, PF3D7_1128300, PF3D7_1128300, PF3D7_1128300, PF3D7_1128300, PF3D7_1128300, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128400, PF3D7_1128500, PF3D7_1128600, PF3D7_1128700, PF3D7_1128900, PF3D7_1128900, PF3D7_1128900, PF3D7_1128900, PF3D7_1129000, PF3D7_1129000, PF3D7_1129000, PF3D7_1129000, PF3D7_1129100, PF3D7_1129200, PF3D7_1129200, PF3D7_1129200, PF3D7_1129200, PF3D7_1129300, PF3D7_1129400, PF3D7_1129500, PF3D7_1129500, PF3D7_1129500, PF3D7_1129500, PF3D7_1129500, PF3D7_1129600, PF3D7_1129700, PF3D7_1129800, PF3D7_1129900, PF3D7_1130000, PF3D7_1130100, PF3D7_1130200, PF3D7_1130300, PF3D7_1130310, PF3D7_1130400, PF3D7_1130500, PF3D7_1130500, PF3D7_1130500, PF3D7_1130500, PF3D7_1130500, PF3D7_1130500, PF3D7_1130500, PF3D7_1130600, PF3D7_1130600, PF3D7_1130600, PF3D7_1130600, PF3D7_1130600, PF3D7_1130600, PF3D7_1130700, PF3D7_1130800, PF3D7_1130800, PF3D7_1130900, PF3D7_1130900, PF3D7_1131000, PF3D7_1131100, PF3D7_1131200, PF3D7_1131200, PF3D7_1131200, PF3D7_1131200, PF3D7_1131200, PF3D7_1131200, PF3D7_1131300, PF3D7_1131400, PF3D7_1131400, PF3D7_1131500, PF3D7_1131600, PF3D7_1131700, PF3D7_1131700, PF3D7_1131700, PF3D7_1131700, PF3D7_1131700, PF3D7_1131800, PF3D7_1131900, PF3D7_1132000, PF3D7_1132100, PF3D7_1132200, PF3D7_1132200, PF3D7_1132300, PF3D7_1132400, PF3D7_1132500, PF3D7_1132600, PF3D7_1132600, PF3D7_1132700, PF3D7_1132800, PF3D7_1132900, PF3D7_1133000, PF3D7_1133100, PF3D7_1133100, PF3D7_1133200, PF3D7_1133200, PF3D7_1133300, PF3D7_1133400, PF3D7_1133500, PF3D7_1133500, PF3D7_1133600, PF3D7_1133700, PF3D7_1133700, PF3D7_1133800, PF3D7_1133800, PF3D7_1133900, PF3D7_1133900 |
|
| NC_037282 | 975,555 | G→A | 100% | intergenic (‑17/+1325) | PF3D7_1124700 ← / ← PF3D7_1124800 | GrpE protein homolog, mitochondrial, putative/ribosome biogenesis regulatory protein, putative | |
| NC_037282 | 975,952 | Δ1 bp | ? | 100% | intergenic (‑414/+928) | PF3D7_1124700 ← / ← PF3D7_1124800 | GrpE protein homolog, mitochondrial, putative/ribosome biogenesis regulatory protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 996,650 | G→T | ? | 100% | intergenic (+192/+1273) | PF3D7_1125300 → / ← PF3D7_1125400 | DNA‑directed RNA polymerase/mitochondrial import inner membrane translocase subunit TIM44, putative |
| NC_037282 | 1,004,010 | A→T | ? | 100% | intergenic (‑316/+770) | PF3D7_1125600 ← / ← PF3D7_1125700 | conserved protein, unknown function/kelch domain‑containing protein, putative |
| NC_037282 | 1,004,014 | A→T | ? | 100% | intergenic (‑320/+766) | PF3D7_1125600 ← / ← PF3D7_1125700 | conserved protein, unknown function/kelch domain‑containing protein, putative |
| NC_037282 | 1,004,019 | A→T | ? | 100% | intergenic (‑325/+761) | PF3D7_1125600 ← / ← PF3D7_1125700 | conserved protein, unknown function/kelch domain‑containing protein, putative |
| NC_037282 | 1,008,375 | C→T | ? | 100% | intergenic (‑1021/+34) | PF3D7_1125700 ← / ← PF3D7_1125800 | kelch domain‑containing protein, putative/kelch domain‑containing protein, putative |
| NC_037282 | 1,048,144 | Δ1 bp | 100% | intergenic (‑2057/‑1777) | PF3D7_1126700 ← / → PF3D7_1126800 | autophagy‑related protein 23, putative/RNA‑binding protein, putative | |
| NC_037282 | 1,062,483 | C→T | ? | 100% | intergenic (‑1700/‑235) | PF3D7_1127100 ← / → PF3D7_1127200 | deoxyuridine 5'‑triphosphate nucleotidohydrolase/conserved Plasmodium protein, unknown function |
| NC_037282 | 1,062,486 | C→T | ? | 100% | intergenic (‑1703/‑232) | PF3D7_1127100 ← / → PF3D7_1127200 | deoxyuridine 5'‑triphosphate nucleotidohydrolase/conserved Plasmodium protein, unknown function |
| NC_037282 | 1,075,271 | Δ2 bp | ? | 100% | intergenic (‑30/+83) | PF3D7_1127700 ← / ← PF3D7_1127700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037282 | 1,256,579 | Δ6 bp | 100% | coding (3088‑3093/4386 nt) | PF3D7_1132400 ← | conserved Plasmodium membrane protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 1,256,590 | (CATTAT)2→1 | 100% | coding (3077‑3082/4386 nt) | PF3D7_1132400 ← | conserved Plasmodium membrane protein, unknown function | |
| NC_037282 | 1,296,693 | G→A | ? | 100% | intergenic (+969/‑108) | PF3D7_1133400 → / → PF3D7_1133500 | apical membrane antigen 1/conserved Plasmodium protein, unknown function |
| NC_037282 | 1,320,001 | 193,600 bp x 2 | 100% | duplication | PF3D7_1134000–[PF3D7_1138400] | 120 genes PF3D7_1134000, PF3D7_1134100, PF3D7_1134200, PF3D7_1134300, PF3D7_1134400, PF3D7_1134400, PF3D7_1134400, PF3D7_1134400, PF3D7_1134400, PF3D7_1134400, PF3D7_1134500, PF3D7_1134500, PF3D7_1134600, PF3D7_1134700, PF3D7_1134700, PF3D7_1134800, PF3D7_1134800, PF3D7_1134900, PF3D7_1135000.1, PF3D7_1135000.1, PF3D7_1135000.1, PF3D7_1135000.1, PF3D7_1135000.1, PF3D7_1135000.1, PF3D7_1135000.1, PF3D7_1135100, PF3D7_1135300, PF3D7_1135400, PF3D7_1135500, PF3D7_1135500, PF3D7_1135500, PF3D7_1135500, PF3D7_1135500, PF3D7_1135600, PF3D7_1135600, PF3D7_1135600, PF3D7_1135600, PF3D7_1135600, PF3D7_1135700, PF3D7_1135700, PF3D7_1135800, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1135900, PF3D7_1136000, PF3D7_1136000, PF3D7_1136100, PF3D7_1136200, PF3D7_1136200, PF3D7_1136200, PF3D7_1136200, PF3D7_1136200, PF3D7_1136300, PF3D7_1136300, PF3D7_1136400, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136500.1, PF3D7_1136600, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136700.1, PF3D7_1136800, PF3D7_1136800, PF3D7_1136800, PF3D7_1136800, PF3D7_1136800, PF3D7_1136900, PF3D7_1136900, PF3D7_1137000, PF3D7_1137100, PF3D7_1137200, PF3D7_1137300, PF3D7_1137400, PF3D7_1137500, PF3D7_1137500, PF3D7_1137600, PF3D7_1137600, PF3D7_1137700, PF3D7_1137800, PF3D7_1137800, PF3D7_1137900, PF3D7_1137900, PF3D7_1138000, PF3D7_1138100, PF3D7_1138200, PF3D7_1138200, PF3D7_1138300, [PF3D7_1138400] |
|
| NC_037282 | 1,343,383 | C→T | ? | 100% | intergenic (‑1703/‑920) | PF3D7_1134400 ← / → PF3D7_1134500 | conserved protein, unknown function/alpha/beta hydrolase, putative |
| NC_037282 | 1,350,084 | C→T | ? | 100% | intergenic (+321/+537) | PF3D7_1134500 → / ← PF3D7_1134600 | alpha/beta hydrolase, putative/zinc finger protein, putative |
| NC_037282 | 1,358,699 | Δ1 bp | ? | 100% | intergenic (‑2910/+665) | PF3D7_1134600 ← / ← PF3D7_1134700 | zinc finger protein, putative/DNA‑directed RNA polymerase I subunit RPA2, putative |
| NC_037282 | 1,389,813 | Δ4 bp | ? | 100% | intergenic (‑904/‑248) | PF3D7_1135500 ← / → PF3D7_1135600 | conserved protein, unknown function/condensin‑2 complex subunit D3, putative |
| NC_037282 | 1,417,883 | C→A | ? | 100% | intergenic (‑6/+193) | PF3D7_1136200 ← / ← PF3D7_1136200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037282 | 1,454,777 | G→A | ? | 100% | intergenic (‑3327/‑1374) | PF3D7_1136800 ← / → PF3D7_1136900 | DnaJ protein, putative/subtilisin‑like protease 2 |
| NC_037282 | 1,509,918 | +TTA | 100% | coding (3774/12681 nt) | PF3D7_1138400 ← | guanylyl cyclase | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 1,518,501 | 46,600 bp x 3 | 100% | amplification | [PF3D7_1138500]–PF3D7_1139300 | 23 genes [PF3D7_1138500], PF3D7_1138600, PF3D7_1138600, PF3D7_1138600, PF3D7_1138700, PF3D7_1138700, PF3D7_1138700, PF3D7_1138700, PF3D7_1138800, PF3D7_1138800, PF3D7_1138800, PF3D7_1138800, PF3D7_1138800, PF3D7_1138800, PF3D7_1138800, PF3D7_1138900, PF3D7_1139000, PF3D7_1139100, PF3D7_1139200, PF3D7_1139200, PF3D7_1139300, PF3D7_1139300, PF3D7_1139300 |
|
| NC_037282 | 1,519,137 | +TAA | 100% | coding (674/2775 nt) | PF3D7_1138500 → | protein phosphatase 2C | |
| NC_037282 | 1,519,169 | (ATA)10→11 | 100% | coding (706/2775 nt) | PF3D7_1138500 → | protein phosphatase 2C | |
| NC_037282 | 1,533,229 | G→T | ? | 100% | intergenic (‑1485/+23) | PF3D7_1138700 ← / ← PF3D7_1138800 | conserved Plasmodium protein, unknown function/WD repeat‑containing protein, putative |
| NC_037282 | 1,575,501 | 149,400 bp x 2 | 100% | duplication | PF3D7_1139500.1–PF3D7_1143100 | 98 genes PF3D7_1139500.1, PF3D7_1139500.1, PF3D7_1139500.1, PF3D7_1139500.1, PF3D7_1139500.1, PF3D7_1139500.1, PF3D7_1139500.1, PF3D7_1139600, PF3D7_1139700, PF3D7_1139800, PF3D7_1139900, PF3D7_1139900, PF3D7_1139900, PF3D7_1139900, PF3D7_1140000, PF3D7_1140000, PF3D7_1140100, PF3D7_1140100, PF3D7_1140100, PF3D7_1140100, PF3D7_1140200, PF3D7_1140200, PF3D7_1140300, PF3D7_1140400, PF3D7_1140400, PF3D7_1140500, PF3D7_1140500, PF3D7_1140500, PF3D7_1140500, PF3D7_1140500, PF3D7_1140600, PF3D7_1140700, PF3D7_1140800, PF3D7_1140900, PF3D7_1140900, PF3D7_1140900, PF3D7_1140900, PF3D7_1140900, PF3D7_1140900, PF3D7_1141000, PF3D7_1141100, PF3D7_1141200, PF3D7_1141200, PF3D7_1141300, PF3D7_1141300, PF3D7_1141400, PF3D7_1141400, PF3D7_1141400, PF3D7_1141400, PF3D7_1141400, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141500, PF3D7_1141600, PF3D7_1141700, PF3D7_1141700, PF3D7_1141700, PF3D7_1141700, PF3D7_1141700, PF3D7_1141800, PF3D7_1141800, PF3D7_1141800, PF3D7_1141800, PF3D7_1141800, PF3D7_1141800, PF3D7_1141800, PF3D7_1141900, PF3D7_1142000, PF3D7_1142100, PF3D7_1142200, PF3D7_1142200, PF3D7_1142200, PF3D7_1142300, PF3D7_1142300, PF3D7_1142300, PF3D7_1142400, PF3D7_1142400, PF3D7_1142500, PF3D7_1142500, PF3D7_1142500, PF3D7_1142600, PF3D7_1142600, PF3D7_1142700, PF3D7_1142800, PF3D7_1142900, PF3D7_1143000, PF3D7_1143100 |
|
| NC_037282 | 1,674,544 | +A | 100% | 100% | coding (14/291 nt) | PF3D7_1141800 ← | EELM2 domain‑containing protein, putative |
| NC_037282 | 1,678,424 | Δ4 bp | ? | 100% | intergenic (‑655/‑651) | PF3D7_1141900 ← / → PF3D7_1142000 | inner membrane complex protein 1b, putative/heptatricopeptide repeat‑containing protein, putative |
| NC_037282 | 1,693,682 | Δ18 bp | ? | 100% | intergenic (‑101/+69) | PF3D7_1142200 ← / ← PF3D7_1142200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037282 | 1,729,478 | T→A | ? | 100% | intergenic (‑4617/‑315) | PF3D7_1143100 ← / → PF3D7_1143200 | AP2 domain transcription factor AP2‑O, putative/DnaJ protein, putative |
| NC_037282 | 1,729,801 | 57,000 bp x 2 | 100% | duplication | [PF3D7_1143200]–PF3D7_1145100 | 51 genes [PF3D7_1143200], PF3D7_1143200, PF3D7_1143300, PF3D7_1143400, PF3D7_1143400, PF3D7_1143400, PF3D7_1143400, PF3D7_1143400, PF3D7_1143400, PF3D7_1143500, PF3D7_1143500, PF3D7_1143600, PF3D7_1143700, PF3D7_1143700, PF3D7_1143700, PF3D7_1143700, PF3D7_1143700, PF3D7_1143700, PF3D7_1143800, PF3D7_1143900, PF3D7_1143900, PF3D7_1143900, PF3D7_1144000, PF3D7_1144000, PF3D7_1144100, PF3D7_1144100, PF3D7_1144100, PF3D7_1144200, PF3D7_1144200, PF3D7_1144300, PF3D7_1144300, PF3D7_1144400, PF3D7_1144500, PF3D7_1144600, PF3D7_1144700, PF3D7_1144700, PF3D7_1144700, PF3D7_1144700, PF3D7_1144700, PF3D7_1144800, PF3D7_1144900, PF3D7_1144900, PF3D7_1144900, PF3D7_1144900, PF3D7_1145000, PF3D7_1145000, PF3D7_1145000, PF3D7_1145000, PF3D7_1145000, PF3D7_1145000, PF3D7_1145100 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 1,731,477 | G→A | ? | 100% | intergenic (+578/+422) | PF3D7_1143200 → / ← PF3D7_1143300 | DnaJ protein, putative/DNA‑directed RNA polymerases I and III subunit RPAC1, putative |
| NC_037282 | 1,759,848 | C→T | ? | 100% | intergenic (‑526/+21) | PF3D7_1144300 ← / ← PF3D7_1144300 | 60S ribosomal protein L41/60S ribosomal protein L41 |
| NC_037282 | 1,788,163 | T→A | ? | 100% | intergenic (‑1600/+1160) | PF3D7_1145100 ← / ← PF3D7_1145200 | coatomer subunit gamma, putative/serine/threonine protein kinase, putative |
| NC_037282 | 1,789,301 | 92,200 bp x 2 | 100% | duplication | PF3D7_1145200–PF3D7_1147200 | 72 genes PF3D7_1145200, PF3D7_1145300, PF3D7_1145300, PF3D7_1145300, PF3D7_1145300, PF3D7_1145400, PF3D7_1145400, PF3D7_1145400, PF3D7_1145400, PF3D7_1145500, PF3D7_1145500, PF3D7_1145500, PF3D7_1145600, PF3D7_1145600, PF3D7_1145600, PF3D7_1145700, PF3D7_1145800, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1145900, PF3D7_1146000, PF3D7_1146100, PF3D7_1146100, PF3D7_1146100, PF3D7_1146100, PF3D7_1146100, PF3D7_1146100, PF3D7_1146100, PF3D7_1146100, PF3D7_1146200, PF3D7_1146200, PF3D7_1146300, PF3D7_1146300, PF3D7_1146500, PF3D7_1146600, PF3D7_1146600, PF3D7_1146600, PF3D7_1146600, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146700, PF3D7_1146800, PF3D7_1146800, PF3D7_1146900, PF3D7_1146900, PF3D7_1146900, PF3D7_1146900, PF3D7_1146900, PF3D7_1146900, PF3D7_1146900, PF3D7_1147000, PF3D7_1147000, PF3D7_1147000, PF3D7_1147100, PF3D7_1147100, PF3D7_1147100, PF3D7_1147100, PF3D7_1147200 |
|
| NC_037282 | 1,826,830 | Δ1 bp | 100% | intergenic (‑38/+1410) | PF3D7_1146200 ← / ← PF3D7_1146300 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037282 | 1,826,851 | (A)22→21 | 100% | intergenic (‑59/+1389) | PF3D7_1146200 ← / ← PF3D7_1146300 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037282 | 1,842,969 | +TA | 100% | intergenic (‑91/+676) | PF3D7_1146700 ← / ← PF3D7_1146800 | kinesin‑like protein, putative/conserved Plasmodium protein, unknown function | |
| NC_037282 | 1,883,601 | 127,300 bp x 4 | 100% | amplification | PF3D7_1147300–[PF3D7_1149900] | 54 genes PF3D7_1147300, PF3D7_1147400, PF3D7_1147400, PF3D7_1147500, PF3D7_1147600, PF3D7_1147600, PF3D7_1147600, PF3D7_1147600, PF3D7_1147600, PF3D7_1147700, PF3D7_1147700, PF3D7_1147700, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147800.1, PF3D7_1147900, PF3D7_1148000, PF3D7_1148100, PF3D7_1148200, PF3D7_1148500, PF3D7_1148600, PF3D7_1148620, PF3D7_1148640, PF3D7_1148700, PF3D7_1148700, PF3D7_1148800, PF3D7_1148800, PF3D7_1148900, PF3D7_1149000, PF3D7_1149000, PF3D7_1149100.1, PF3D7_1149100.1, PF3D7_1149100.1, PF3D7_1149100.1, PF3D7_1149200, PF3D7_1149200, PF3D7_1149300, PF3D7_1149300, PF3D7_1149300, PF3D7_1149400, PF3D7_1149400, PF3D7_1149600, PF3D7_1149600, PF3D7_1149700, PF3D7_1149800, PF3D7_1149800, PF3D7_1149900, [PF3D7_1149900] |
|
| NC_037282 | 1,915,373 | Δ1 bp | 100% | intergenic (‑1874/‑1019) | PF3D7_1148000 ← / → PF3D7_1148100 | serine/threonine protein kinase, putative/uncharacterized ncRNA | |
| NC_037282 | 2,013,301 | 25,100 bp x 5 | 100% | amplification | [PF3D7_1150000]–PF3D7_1150400 | [PF3D7_1150000], PF3D7_1150200, PF3D7_1150200, PF3D7_1150300, PF3D7_1150300, PF3D7_1150400, PF3D7_1150400 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037282 | 2,034,148 | G→A | ? | 100% | intergenic (+178/‑533) | PF3D7_1150400 → / → PF3D7_1150400 | erythrocyte membrane protein 1, PfEMP1/erythrocyte membrane protein 1, PfEMP1 |
| NC_037282 | 2,034,154 | G→A | ? | 100% | intergenic (+184/‑527) | PF3D7_1150400 → / → PF3D7_1150400 | erythrocyte membrane protein 1, PfEMP1/erythrocyte membrane protein 1, PfEMP1 |
| NC_037282 | 2,038,241 | G→T | 100% | intergenic (+2355/–) | PF3D7_1150400 → / – | erythrocyte membrane protein 1, PfEMP1/– | |
| NC_037283 | 41,244 | +AT | 100% | intergenic (‑5471/+45) | PF3D7_1401000 ← / ← PF3D7_1401100 | GBPH protein/DnaJ protein, putative | |
| NC_037283 | 67,098 | Δ2 bp | ? | 100% | intergenic (‑17/‑4269) | PF3D7_1401700 ← / → PF3D7_1401800 | conserved Plasmodium protein, unknown function/choline kinase |
| NC_037283 | 76,827 | G→A | ? | 100% | intergenic (‑34/+431) | PF3D7_1401900 ← / ← PF3D7_1402000 | conserved protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 94,853 | Δ2 bp | ? | 100% | intergenic (‑1316/+126) | PF3D7_1402500 ← / ← PF3D7_1402700 | ribosomal protein S27a, putative/U2 snRNP‑associated SURP motif‑containing protein, putative |
| NC_037283 | 100,573 | C→T | ? | 100% | intergenic (‑2169/‑274) | PF3D7_1402700 ← / → PF3D7_1402800 | U2 snRNP‑associated SURP motif‑containing protein, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 100,577 | C→T | ? | 100% | intergenic (‑2173/‑270) | PF3D7_1402700 ← / → PF3D7_1402800 | U2 snRNP‑associated SURP motif‑containing protein, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 100,581 | C→T | ? | 100% | intergenic (‑2177/‑266) | PF3D7_1402700 ← / → PF3D7_1402800 | U2 snRNP‑associated SURP motif‑containing protein, putative/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 105,501 | +TTTAT | 100% | intergenic (+106/‑43) | PF3D7_1402800 → / → PF3D7_1402800 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037283 | 109,948 | (T)20→21 | 100% | intergenic (+714/‑166) | PF3D7_1402900 → / → PF3D7_1403000 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037283 | 113,044 | C→T | ? | 100% | intergenic (+399/+100) | PF3D7_1403000 → / ← PF3D7_1403100 | conserved Plasmodium protein, unknown function/condensin complex subunit 1, putative |
| NC_037283 | 127,715 | Δ2 bp | ? | 100% | intergenic (+76/‑57) | PF3D7_1403400 → / → PF3D7_1403400 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 128,818 | +ATAA | 100% | intergenic (+14/‑106) | PF3D7_1403400 → / → PF3D7_1403400 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037283 | 135,174 | C→T | ? | 100% | intergenic (‑101/+1356) | PF3D7_1403700 ← / ← PF3D7_1403800 | translocation associated membrane protein, putative/nuclear formin‑like protein MISFIT, putative |
| NC_037283 | 153,372 | +AAGGAC | 100% | coding (234/1407 nt) | PF3D7_1404500 → | rRNA biogenesis protein RRP5, putative | |
| NC_037283 | 168,502 | +T | ? | 100% | intergenic (‑1648/‑1498) | PF3D7_1404800 ← / → PF3D7_1404900 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 184,018 | Δ6 bp | ? | 100% | coding (2064‑2069/3078 nt) | PF3D7_1405300 → | conserved Plasmodium protein, unknown function |
| NC_037283 | 205,115 | G→A | ? | 100% | intergenic (‑972/‑444) | PF3D7_1405800 ← / → PF3D7_1405900 | ribosome biogenesis protein BOP1, putative/RNA‑binding protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 262,557 | Δ1 bp | ? | 100% | intergenic (‑458/‑1846) | PF3D7_1407200 ← / → PF3D7_1407300 | conserved Plasmodium protein, unknown function/pre‑mRNA‑splicing factor 38B, putative |
| NC_037283 | 285,359 | C→T | ? | 100% | intergenic (+924/‑2938) | PF3D7_1407800 → / → PF3D7_1407900 | plasmepsin IV/plasmepsin I |
| NC_037283 | 303,132 | Δ6 bp | ? | 100% | coding (2697‑2702/5109 nt) | PF3D7_1408200 ← | AP2 domain transcription factor AP2‑G2, putative |
| NC_037283 | 393,142 | A→T | 100% | 100% | L237I (TTA→ATA) | PF3D7_1410000 ← | ER membrane protein complex subunit 2, putative |
| NC_037283 | 398,398 | +A | ? | 100% | intergenic (+431/‑2020) | PF3D7_1410100 → / → PF3D7_1410200 | alpha/beta hydrolase, putative/CTP synthase |
| NC_037283 | 460,454 | Δ2 bp | ? | 100% | intergenic (+15/‑445) | PF3D7_1411300 → / → PF3D7_1411300 | DnaJ protein, putative/DnaJ protein, putative |
| NC_037283 | 472,809 | T→A | ? | 100% | intergenic (+793/‑41) | PF3D7_1411500 → / → PF3D7_1411600 | conserved Plasmodium protein, unknown function/GTP‑binding protein Obg1 |
| NC_037283 | 472,818 | T→A | ? | 100% | intergenic (+802/‑32) | PF3D7_1411500 → / → PF3D7_1411600 | conserved Plasmodium protein, unknown function/GTP‑binding protein Obg1 |
| NC_037283 | 478,522 | C→T | ? | 100% | K122K (AAG→AAA) | PF3D7_1411800 ← | conserved Plasmodium protein, unknown function |
| NC_037283 | 478,533 | C→T | ? | 100% | E119K (GAA→AAA) | PF3D7_1411800 ← | conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 487,519 | +AATAAATG | 100% | intergenic (+211/+257) | PF3D7_1412100 → / ← PF3D7_1412200 | mini‑chromosome maintenance complex‑binding protein, putative/conserved Plasmodium protein, unknown function | |
| NC_037283 | 516,531 | +TATTA | 100% | intergenic (+509/+43) | PF3D7_1412700 → / ← PF3D7_1412800 | AAA family ATPase, putative/glycylpeptide N‑tetradecanoyltransferase | |
| NC_037283 | 566,825 | Δ1 bp | ? | 100% | intergenic (‑1578/‑3977) | PF3D7_1414200 ← / → PF3D7_1414300 | conserved Plasmodium protein, unknown function/60S ribosomal protein L10, putative |
| NC_037283 | 577,196 | C→T | ? | 100% | intergenic (+141/+1173) | PF3D7_1414400 → / ← PF3D7_1414500 | serine/threonine protein phosphatase PP1/atypical protein kinase, ABC‑1 family, putative |
| NC_037283 | 592,301 | Δ1 bp | ? | 100% | intergenic (+113/+691) | PF3D7_1414600 → / ← PF3D7_1414700 | mRNA‑capping enzyme subunit alpha/ubiquitin carboxyl‑terminal hydrolase, putative |
| NC_037283 | 601,873 | T→A | ? | 100% | intergenic (‑1193/+108) | PF3D7_1414800 ← / ← PF3D7_1414900 | small nuclear ribonucleoprotein‑associated protein B, putative/ATP‑dependent protease, putative |
| NC_037283 | 606,301 | Δ2 bp | ? | 100% | intergenic (‑742/+78) | PF3D7_1414900 ← / ← PF3D7_1415000 | ATP‑dependent protease, putative/uracil‑DNA glycosylase |
| NC_037283 | 639,273 | C→T | ? | 100% | intergenic (‑2740/‑1101) | PF3D7_1415700 ← / → PF3D7_1415800 | serine palmitoyltransferase, putative/ribosomal RNA small subunit methyltransferase A1 |
| NC_037283 | 726,158 | Δ2 bp | ? | 100% | intergenic (+12849/+820) | PF3D7_1417300 → / ← PF3D7_1417500 | cysteine protease ATG4, putative/H/ACA ribonucleoprotein complex subunit 4, putative |
| NC_037283 | 728,483 | G→A | ? | 100% | intergenic (‑104/+2211) | PF3D7_1417500 ← / ← PF3D7_1417600 | H/ACA ribonucleoprotein complex subunit 4, putative/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 730,501 | 5,600 bp x 2 | 100% | duplication | [PF3D7_1417600] | [PF3D7_1417600] | |
| NC_037283 | 830,933 | G→A | ? | 100% | intergenic (‑160/+1402) | PF3D7_1420000 ← / ← PF3D7_1420100 | splicing factor 3B subunit 4, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 846,126 | Δ1 bp | ? | 100% | intergenic (+1507/‑382) | PF3D7_1420300 → / → PF3D7_1420400 | DNL‑type zinc finger protein/glycine‑‑tRNA ligase |
| NC_037283 | 866,193 | G→A | ? | 100% | intergenic (‑20/+214) | PF3D7_1420900 ← / ← PF3D7_1420900 | mannose‑1‑phosphate guanyltransferase, putative/mannose‑1‑phosphate guanyltransferase, putative |
| NC_037283 | 886,036 | G→A | ? | 100% | intergenic (+13/‑319) | PF3D7_1421600 → / → PF3D7_1421600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 891,953 | +AT | ? | 100% | intergenic (‑331/+38) | PF3D7_1421900 ← / ← PF3D7_1422000 | copper transporter, putative/cytochrome c oxidase assembly protein COX14, putative |
| NC_037283 | 906,571 | G→T | ? | 100% | intergenic (+1293/‑49) | PF3D7_1422400 → / → PF3D7_1422500 | conserved Plasmodium protein, unknown function/ERAD‑associated E3 ubiquitin‑protein ligase HRD1 |
| NC_037283 | 906,575 | G→T | ? | 100% | intergenic (+1297/‑45) | PF3D7_1422400 → / → PF3D7_1422500 | conserved Plasmodium protein, unknown function/ERAD‑associated E3 ubiquitin‑protein ligase HRD1 |
| NC_037283 | 921,587 | +AT | 100% | intergenic (‑1590/‑1344) | PF3D7_1422800 ← / → PF3D7_1422900 | actin‑related protein, putative/14‑3‑3 protein, putative | |
| NC_037283 | 954,952 | G→A | ? | 100% | intergenic (‑2604/‑913) | PF3D7_1423500 ← / → PF3D7_1423600 | conserved Plasmodium protein, unknown function/calcium‑dependent protein kinase, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 956,179 | C→T | ? | 100% | intergenic (+214/‑72) | PF3D7_1423600 → / → PF3D7_1423600 | calcium‑dependent protein kinase, putative/calcium‑dependent protein kinase, putative |
| NC_037283 | 965,968 | G→A | 100% | 100% | intergenic (‑2218/‑1595) | PF3D7_1423700 ← / → PF3D7_1423800 | conserved Plasmodium protein, unknown function/vacuolar protein sorting‑associated protein 3, putative |
| NC_037283 | 966,800 | C→T | ? | 100% | intergenic (‑3050/‑763) | PF3D7_1423700 ← / → PF3D7_1423800 | conserved Plasmodium protein, unknown function/vacuolar protein sorting‑associated protein 3, putative |
| NC_037283 | 985,525 | Δ2 bp | ? | 100% | intergenic (‑86/+58) | PF3D7_1425300 ← / ← PF3D7_1425300 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 988,360 | C→T | ? | 100% | intergenic (‑605/‑860) | PF3D7_1425300 ← / → PF3D7_1425400 | conserved Plasmodium protein, unknown function/DEAD/DEAH box helicase, putative |
| NC_037283 | 988,367 | C→T | ? | 100% | intergenic (‑612/‑853) | PF3D7_1425300 ← / → PF3D7_1425400 | conserved Plasmodium protein, unknown function/DEAD/DEAH box helicase, putative |
| NC_037283 | 988,374 | C→T | ? | 100% | intergenic (‑619/‑846) | PF3D7_1425300 ← / → PF3D7_1425400 | conserved Plasmodium protein, unknown function/DEAD/DEAH box helicase, putative |
| NC_037283 | 1,000,774 | Δ2 bp | ? | 100% | intergenic (‑268/‑5868) | PF3D7_1425600 ← / → PF3D7_1425700 | zinc finger protein, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,025,809 | +AT | 100% | intergenic (‑44/+453) | PF3D7_1426300 ← / ← PF3D7_1426400 | dynein intermediate chain, putative/MORN repeat protein, putative | |
| NC_037283 | 1,031,419 | Δ6 bp | ? | 100% | coding (3937‑3942/4296 nt) | PF3D7_1426600 ← | conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 1,035,643 | C→T | ? | 100% | intergenic (‑283/+494) | PF3D7_1426600 ← / ← PF3D7_1426700 | conserved Plasmodium protein, unknown function/phosphoenolpyruvate carboxylase |
| NC_037283 | 1,071,701 | Δ3,000 bp | 100% | intergenic (+2315/+2657) | PF3D7_1427300 → / ← PF3D7_1427400.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium membrane protein, unknown function | |
| NC_037283 | 1,081,453 | (A)18→17 | 100% | intergenic (‑1732/‑320) | PF3D7_1427400.1 ← / → PF3D7_1427500 | conserved Plasmodium membrane protein, unknown function/DNA mismatch repair protein MSH2, putative | |
| NC_037283 | 1,097,186 | Δ1 bp | 100% | intergenic (+46/‑108) | PF3D7_1428000 → / → PF3D7_1428000 | conserved Plasmodium membrane protein, unknown function/conserved Plasmodium membrane protein, unknown function | |
| NC_037283 | 1,107,903 | G→A | ? | 100% | intergenic (‑1389/+187) | PF3D7_1428300 ← / ← PF3D7_1428400 | proliferation‑associated protein 2g4, putative/WD and tetratricopeptide repeats protein 1, putative |
| NC_037283 | 1,153,878 | +AT | 100% | intergenic (‑491/‑1477) | PF3D7_1429300 ← / → PF3D7_1429400 | CPW‑WPC family protein/rRNA (adenosine‑2'‑O‑)‑methyltransferase, putative | |
| NC_037283 | 1,154,632 | (A)19→20 | 100% | intergenic (‑1245/‑723) | PF3D7_1429300 ← / → PF3D7_1429400 | CPW‑WPC family protein/rRNA (adenosine‑2'‑O‑)‑methyltransferase, putative | |
| NC_037283 | 1,204,612 | C→T | ? | 100% | intergenic (+273/‑476) | PF3D7_1430400 → / → PF3D7_1430500 | autophagy protein 5, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,291,030 | Δ1 bp | 100% | intergenic (‑141/+32) | PF3D7_1432700 ← / ← PF3D7_1432700 | protein‑L‑isoaspartate(D‑aspartate) O‑methyltransferase, putative/protein‑L‑isoaspartate(D‑aspartate) O‑methyltransferase, putative | |
| NC_037283 | 1,309,608 | C→T | ? | 100% | intergenic (‑1777/‑433) | PF3D7_1433200 ← / → PF3D7_1433300 | conserved Plasmodium protein, unknown function/chromatin assembly factor 1 P55 subunit, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 1,309,610 | C→T | ? | 100% | intergenic (‑1779/‑431) | PF3D7_1433200 ← / → PF3D7_1433300 | conserved Plasmodium protein, unknown function/chromatin assembly factor 1 P55 subunit, putative |
| NC_037283 | 1,311,709 | A→T | ? | 100% | intergenic (+147/‑21) | PF3D7_1433300 → / → PF3D7_1433300 | chromatin assembly factor 1 P55 subunit, putative/chromatin assembly factor 1 P55 subunit, putative |
| NC_037283 | 1,311,717 | A→T | ? | 100% | intergenic (+155/‑13) | PF3D7_1433300 → / → PF3D7_1433300 | chromatin assembly factor 1 P55 subunit, putative/chromatin assembly factor 1 P55 subunit, putative |
| NC_037283 | 1,358,705 | Δ2 bp | ? | 100% | intergenic (‑326/‑1296) | PF3D7_1433800 ← / → PF3D7_1433900 | conserved Plasmodium protein, unknown function/protein kinase, putative |
| NC_037283 | 1,359,581 | G→A | ? | 100% | intergenic (‑1202/‑421) | PF3D7_1433800 ← / → PF3D7_1433900 | conserved Plasmodium protein, unknown function/protein kinase, putative |
| NC_037283 | 1,433,693 | Δ1 bp | 100% | intergenic (‑2472/+45) | PF3D7_1435300 ← / ← PF3D7_1435400 | glutamate synthase [NADH], putative/ER membrane protein complex subunit 4, putative | |
| NC_037283 | 1,442,961 | Δ1 bp | ? | 100% | intergenic (‑84/+2124) | PF3D7_1435600 ← / ← PF3D7_1435700.1 | conserved Plasmodium protein, unknown function/ataxin‑2 like protein, putative |
| NC_037283 | 1,448,156 | Δ1 bp | 100% | intergenic (‑8/+165) | PF3D7_1435700.1 ← / ← PF3D7_1435700.1 | ataxin‑2 like protein, putative/ataxin‑2 like protein, putative | |
| NC_037283 | 1,452,179 | Δ2 bp | ? | 100% | intergenic (‑2688/‑424) | PF3D7_1435700.1 ← / → PF3D7_1435800 | ataxin‑2 like protein, putative/GTPase Era, putative |
| NC_037283 | 1,455,701 | Δ2,300 bp | 100% | intergenic (‑205/‑131) | PF3D7_1435900 ← / → PF3D7_1436000 | conserved Plasmodium protein, unknown function/glucose‑6‑phosphate isomerase | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 1,479,601 | 13,800 bp x 1 | 100% | amplification | PF3D7_1436300–[PF3D7_1436600] | PF3D7_1436300, PF3D7_1436400, PF3D7_1436400, PF3D7_1436500, PF3D7_1436600, PF3D7_1436600, [PF3D7_1436600] | |
| NC_037283 | 1,488,178 | Δ6 bp | ? | 100% | intergenic (+49/‑523) | PF3D7_1436400 → / → PF3D7_1436500 | conserved Plasmodium protein, unknown function/GTP‑binding protein, putative |
| NC_037283 | 1,492,724 | A→T | ? | 100% | intergenic (‑214/+51) | PF3D7_1436600 ← / ← PF3D7_1436600 | cGMP‑dependent protein kinase/cGMP‑dependent protein kinase |
| NC_037283 | 1,492,733 | A→T | ? | 100% | intergenic (‑223/+42) | PF3D7_1436600 ← / ← PF3D7_1436600 | cGMP‑dependent protein kinase/cGMP‑dependent protein kinase |
| NC_037283 | 1,513,097 | G→A | ? | 100% | intergenic (‑3008/+841) | PF3D7_1437200 ← / ← PF3D7_1437300 | ribonucleoside‑diphosphate reductase large subunit, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,515,551 | Δ1 bp | 100% | intergenic (‑590/‑1519) | PF3D7_1437300 ← / → PF3D7_1437400 | conserved Plasmodium protein, unknown function/pantothenate kinase 2, putative | |
| NC_037283 | 1,515,567 | (T)17→16 | 100% | intergenic (‑606/‑1503) | PF3D7_1437300 ← / → PF3D7_1437400 | conserved Plasmodium protein, unknown function/pantothenate kinase 2, putative | |
| NC_037283 | 1,564,549 | Δ1 bp | ? | 100% | intergenic (+1484/‑26) | PF3D7_1438600 → / → PF3D7_1438700 | conserved protein, unknown function/DNA primase small subunit |
| NC_037283 | 1,597,781 | Δ1 bp | ? | 100% | coding (3011/5291 nt) | PF3D7_1439300 → | Sad1/UNC domain‑containing protein, putative |
| NC_037283 | 1,622,720 | Δ2 bp | ? | 100% | intergenic (+33/‑257) | PF3D7_1439900 → / → PF3D7_1439900 | triosephosphate isomerase/triosephosphate isomerase |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 1,652,331 | Δ1 bp | 100% | intergenic (‑637/‑1716) | PF3D7_1440400 ← / → PF3D7_1440500 | zinc finger protein, putative/allantoicase, putative | |
| NC_037283 | 1,700,253 | C→T | ? | 100% | intergenic (‑2240/‑421) | PF3D7_1441600 ← / → PF3D7_1441700 | acid cluster protein 33 homologue, putative/mitochondrial inner membrane protease ATP23, putative |
| NC_037283 | 1,724,288 | Δ1 bp | 100% | intergenic (+776/+114) | PF3D7_1442400 → / ← PF3D7_1442500 | conserved Plasmodium protein, unknown function/geranylgeranyl transferase type‑2 subunit alpha, putative | |
| NC_037283 | 1,830,859 | A→T | ? | 100% | intergenic (+897/‑150) | PF3D7_1444300 → / → PF3D7_1444400 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,830,867 | A→T | ? | 100% | intergenic (+905/‑142) | PF3D7_1444300 → / → PF3D7_1444400 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase, putative/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,841,215 | C→T | ? | 100% | intergenic (+153/‑46) | PF3D7_1444600 → / → PF3D7_1444600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,841,218 | C→T | ? | 100% | intergenic (+156/‑43) | PF3D7_1444600 → / → PF3D7_1444600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 1,850,593 | Δ2 bp | ? | 100% | intergenic (‑201/+1062) | PF3D7_1445000 ← / ← PF3D7_1445100 | prolyl hydroxylase‑like protein, putative/histidine‑‑tRNA ligase, putative |
| NC_037283 | 1,885,206 | Δ2 bp | ? | 100% | intergenic (‑2629/‑236) | PF3D7_1445800 ← / → PF3D7_1445900 | conserved Plasmodium membrane protein, unknown function/ATP‑dependent RNA helicase DDX5, putative |
| NC_037283 | 1,887,438 | C→T | ? | 100% | intergenic (+973/‑325) | PF3D7_1445900 → / → PF3D7_1445900 | ATP‑dependent RNA helicase DDX5, putative/ATP‑dependent RNA helicase DDX5, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 1,916,763 | Δ1 bp | ? | 100% | intergenic (+561/+469) | PF3D7_1446500 → / ← PF3D7_1446600 | nucleoporin NUP313, putative/centrin‑2 |
| NC_037283 | 1,920,083 | Δ4 bp | 100% | intergenic (‑18/+160) | PF3D7_1446700 ← / ← PF3D7_1446700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037283 | 2,033,580 | A→T | 100% | intergenic (+183/+1536) | PF3D7_1449500 → / ← PF3D7_1449600 | AP2 domain transcription factor AP2‑O5, putative/conserved protein, unknown function | |
| NC_037283 | 2,033,583 | C→T | 100% | intergenic (+186/+1533) | PF3D7_1449500 → / ← PF3D7_1449600 | AP2 domain transcription factor AP2‑O5, putative/conserved protein, unknown function | |
| NC_037283 | 2,045,859 | A→T | ? | 100% | intergenic (‑830/‑1934) | PF3D7_1449900 ← / → PF3D7_1450000 | conserved protein, unknown function/serine/threonine protein kinase, putative |
| NC_037283 | 2,067,802 | G→A | ? | 100% | intergenic (‑19/+185) | PF3D7_1450500 ← / ← PF3D7_1450500 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037283 | 2,085,374 | Δ1 bp | 100% | coding (2146/2415 nt) | PF3D7_1451000 ← | conserved Plasmodium protein, unknown function | |
| NC_037283 | 2,100,745 | Δ2 bp | ? | 100% | intergenic (‑1009/‑4201) | PF3D7_1451200 ← / → PF3D7_1451300 | conserved Plasmodium protein, unknown function/E3 SUMO‑protein ligase NSE2, putative |
| NC_037283 | 2,123,801 | 17,300 bp x 1 | 100% | amplification | [PF3D7_1451800]–PF3D7_1452000 | [PF3D7_1451800], PF3D7_1451800, PF3D7_1451800, PF3D7_1451800, PF3D7_1451900, PF3D7_1452000 | |
| NC_037283 | 2,185,087 | Δ2 bp | 100% | intergenic (+210/‑44) | PF3D7_1453200 → / → PF3D7_1453200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 2,233,998 | Δ2 bp | ? | 100% | intergenic (+2417/‑144) | PF3D7_1454300 → / → PF3D7_1454400 | SNF1‑related serine/threonine protein kinase KIN/aminopeptidase P |
| NC_037283 | 2,284,159 | Δ2 bp | ? | 100% | intergenic (‑1997/‑953) | PF3D7_1455700 ← / → PF3D7_1455800 | conserved Plasmodium protein, unknown function/LCCL domain‑containing protein |
| NC_037283 | 2,294,210 | Δ1 bp | 100% | intergenic (‑1519/‑2281) | PF3D7_1455900 ← / → PF3D7_1456000 | polyprenol reductase, putative/AP2 domain transcription factor, putative | |
| NC_037283 | 2,338,259 | Δ2 bp | ? | 100% | intergenic (‑260/+61) | PF3D7_1457000 ← / ← PF3D7_1457000 | signal peptide peptidase/signal peptide peptidase |
| NC_037283 | 2,339,174 | T→A | ? | 100% | intergenic (‑21/‑1610) | PF3D7_1457000 ← / → PF3D7_1457100 | signal peptide peptidase/conserved Plasmodium protein, unknown function |
| NC_037283 | 2,365,469 | C→T | ? | 100% | intergenic (+99/‑1818) | PF3D7_1457600 → / → PF3D7_1457700 | conserved Plasmodium protein, unknown function/large ribosomal subunit nuclear export factor, putative |
| NC_037283 | 2,365,473 | C→T | ? | 100% | intergenic (+103/‑1814) | PF3D7_1457600 → / → PF3D7_1457700 | conserved Plasmodium protein, unknown function/large ribosomal subunit nuclear export factor, putative |
| NC_037283 | 2,365,480 | C→T | ? | 100% | intergenic (+110/‑1807) | PF3D7_1457600 → / → PF3D7_1457700 | conserved Plasmodium protein, unknown function/large ribosomal subunit nuclear export factor, putative |
| NC_037283 | 2,456,262 | C→T | ? | 100% | intergenic (+383/+617) | PF3D7_1460100 → / ← PF3D7_1460200 | FYVE and coiled‑coil domain‑containing protein/conserved protein, unknown function |
| NC_037283 | 2,456,648 | C→T | ? | 100% | intergenic (+769/+231) | PF3D7_1460100 → / ← PF3D7_1460200 | FYVE and coiled‑coil domain‑containing protein/conserved protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 2,456,655 | C→T | ? | 100% | intergenic (+776/+224) | PF3D7_1460100 → / ← PF3D7_1460200 | FYVE and coiled‑coil domain‑containing protein/conserved protein, unknown function |
| NC_037283 | 2,456,662 | C→T | ? | 100% | intergenic (+783/+217) | PF3D7_1460100 → / ← PF3D7_1460200 | FYVE and coiled‑coil domain‑containing protein/conserved protein, unknown function |
| NC_037283 | 2,456,669 | C→T | ? | 100% | intergenic (+790/+210) | PF3D7_1460100 → / ← PF3D7_1460200 | FYVE and coiled‑coil domain‑containing protein/conserved protein, unknown function |
| NC_037283 | 2,462,363 | C→T | ? | 100% | intergenic (+32/‑104) | PF3D7_1460400 → / → PF3D7_1460400 | ubiquitin carboxyl‑terminal hydrolase isozyme L3/ubiquitin carboxyl‑terminal hydrolase isozyme L3 |
| NC_037283 | 2,494,814 | Δ4 bp | 100% | intergenic (‑52/+1233) | PF3D7_1461400 ← / ← PF3D7_1461500 | MORN repeat protein, putative/meiotic nuclear division protein 1, putative | |
| NC_037283 | 2,494,853 | (TAAA)10→9 | 100% | intergenic (‑91/+1194) | PF3D7_1461400 ← / ← PF3D7_1461500 | MORN repeat protein, putative/meiotic nuclear division protein 1, putative | |
| NC_037283 | 2,519,128 | G→A | ? | 100% | intergenic (‑371/+77) | PF3D7_1462000 ← / ← PF3D7_1462100 | thioredoxin‑like protein/conserved Plasmodium protein, unknown function |
| NC_037283 | 2,584,057 | C→A | ? | 100% | intergenic (‑508/+518) | PF3D7_1463800 ← / ← PF3D7_1463900 | mitochondrial ribosomal protein S6‑2 precursor, putative/EF‑hand calcium‑binding domain‑containing protein, putative |
| NC_037283 | 2,607,130 | Δ2 bp | ? | 100% | intergenic (‑1719/‑161) | PF3D7_1464400 ← / → PF3D7_1464500 | zinc finger protein, putative/conserved Plasmodium membrane protein, unknown function |
| NC_037283 | 2,618,723 | +A | ? | 100% | intergenic (+1102/‑956) | PF3D7_1464500 → / → PF3D7_1464600 | conserved Plasmodium membrane protein, unknown function/serine/threonine protein phosphatase UIS2, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 2,661,547 | C→T | ? | 100% | intergenic (‑636/‑473) | PF3D7_1465700 ← / → PF3D7_1465800 | plasmepsin VIII, putative/dynein beta chain, putative |
| NC_037283 | 2,661,550 | C→T | ? | 100% | intergenic (‑639/‑470) | PF3D7_1465700 ← / → PF3D7_1465800 | plasmepsin VIII, putative/dynein beta chain, putative |
| NC_037283 | 2,690,301 | 13,900 bp x 1 | 100% | amplification | PF3D7_1466100–PF3D7_1466200 | PF3D7_1466100, PF3D7_1466100, PF3D7_1466200 | |
| NC_037283 | 2,770,531 | G→A | ? | 100% | intergenic (+2596/‑570) | PF3D7_1467800 → / → PF3D7_1467900 | conserved Plasmodium protein, unknown function/rab GTPase activator, putative |
| NC_037283 | 2,794,568 | C→T | ? | 100% | intergenic (‑245/‑7940) | PF3D7_1468100 ← / → PF3D7_1468200 | kelch domain‑containing protein, putative/telomere length and silencing protein 1, putative |
| NC_037283 | 2,802,436 | G→T | ? | 100% | intergenic (‑8113/‑72) | PF3D7_1468100 ← / → PF3D7_1468200 | kelch domain‑containing protein, putative/telomere length and silencing protein 1, putative |
| NC_037283 | 2,802,437 | A→T | ? | 100% | intergenic (‑8114/‑71) | PF3D7_1468100 ← / → PF3D7_1468200 | kelch domain‑containing protein, putative/telomere length and silencing protein 1, putative |
| NC_037283 | 2,837,109 | G→A | ? | 100% | intergenic (‑958/‑210) | PF3D7_1469000 ← / → PF3D7_1469100 | translation initiation factor IF‑1/conserved Plasmodium protein, unknown function |
| NC_037283 | 2,838,906 | C→T | ? | 100% | intergenic (+805/+7) | PF3D7_1469100 → / ← PF3D7_1469200 | conserved Plasmodium protein, unknown function/shewanella‑like protein phosphatase 1, putative |
| NC_037283 | 2,912,538 | A→T | 100% | 100% | R51S (AGA→AGT) | PF3D7_1471200 → | inorganic anion exchanger, inorganic anion antiporter |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 2,913,318 | A→T | ? | 100% | intergenic (+177/‑21) | PF3D7_1471200 → / → PF3D7_1471200 | inorganic anion exchanger, inorganic anion antiporter/inorganic anion exchanger, inorganic anion antiporter |
| NC_037283 | 2,913,729 | Δ2 bp | ? | 100% | intergenic (+156/‑181) | PF3D7_1471200 → / → PF3D7_1471200 | inorganic anion exchanger, inorganic anion antiporter/inorganic anion exchanger, inorganic anion antiporter |
| NC_037283 | 2,923,643 | G→A | ? | 100% | intergenic (‑24/+109) | PF3D7_1471500 ← / ← PF3D7_1471500 | transmembrane protein 43, putative/transmembrane protein 43, putative |
| NC_037283 | 2,941,258 | Δ2 bp | ? | 100% | intergenic (+137/‑73) | PF3D7_1472000 → / → PF3D7_1472000 | pre‑mRNA‑splicing factor ISY1, putative/pre‑mRNA‑splicing factor ISY1, putative |
| NC_037283 | 2,954,415 | C→T | ? | 100% | intergenic (+103/‑99) | PF3D7_1472300 → / → PF3D7_1472300 | conserved protein, unknown function/conserved protein, unknown function |
| NC_037283 | 2,958,515 | Δ1 bp | ? | 100% | coding (807/3487 nt) | PF3D7_1472400 → | M1‑family alanyl aminopeptidase, putative |
| NC_037283 | 2,965,125 | G→A | ? | 100% | intergenic (‑39/‑1624) | PF3D7_1472600 ← / → PF3D7_1472700 | protein disulfide‑isomerase/DNA‑directed RNA polymerase, alpha subunit, putative |
| NC_037283 | 2,970,558 | Δ2 bp | ? | 100% | intergenic (‑99/+49) | PF3D7_1472800 ← / ← PF3D7_1472800 | HSP20‑like chaperone, putative/HSP20‑like chaperone, putative |
| NC_037283 | 2,983,601 | T→C | 100% | 100% | intergenic (+637/‑461) | PF3D7_1473200 → / → PF3D7_1473300 | DnaJ protein, putative/CKK domain‑containing protein, putative |
| NC_037283 | 3,106,413 | G→A | ? | 100% | intergenic (‑1342/‑536) | PF3D7_1475400 ← / → PF3D7_1475500 | cysteine repeat modular protein 4/LCCL domain‑containing protein |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037283 | 3,135,835 | Δ2 bp | ? | 100% | intergenic (+184/‑3304) | PF3D7_1476200 → / → PF3D7_1476300 | Plasmodium exported protein (PHISTb), unknown function/Plasmodium exported protein (PHISTb), unknown function |
| NC_037283 | 3,158,185 | Δ5 bp | ? | 100% | intergenic (+148/‑1298) | PF3D7_1476700 → / → PF3D7_1476800 | lysophospholipase, putative/lysophospholipase, putative |
| NC_037283 | 3,185,304 | Δ2 bp | ? | 100% | intergenic (+952/‑3583) | PF3D7_1477400 → / → PF3D7_1477500 | Plasmodium exported protein (PHIST), unknown function/Plasmodium exported protein (PHISTb), unknown function |
| NC_037283 | 3,207,031 | Δ1 bp | ? | 100% | intergenic (+3014/‑596) | PF3D7_1477700 → / → PF3D7_1477800 | Plasmodium exported protein (PHISTa), unknown function/acyl‑CoA binding protein |
| NC_037283 | 3,260,901 | Δ31,100 bp | 100% | PF3D7_1479200–PF3D7_1480000 | 15 genes PF3D7_1479200, PF3D7_1479400, PF3D7_1479400, PF3D7_1479500, PF3D7_1479500, PF3D7_1479600, PF3D7_1479600, PF3D7_1479700, PF3D7_1479700, PF3D7_1479800, PF3D7_1479800, PF3D7_1479900, PF3D7_1479900, PF3D7_1480000, PF3D7_1480000 |
||
| NC_037283 | 3,291,767 | Δ1 bp | 100% | intergenic (+4764/–) | PF3D7_1480000 → / – | rifin/– | |
| NC_037283 | 3,291,881 | +C | 100% | Δ | intergenic (+4878/–) | PF3D7_1480000 → / – | rifin/– |
| NC_037284 | 1 | 22,200 bp x 20 | 100% | amplification | PF3D7_1200100 | PF3D7_1200100 | |
| NC_037284 | 489 | G→A | ? | 100% | intergenic (–/‑16484) | – / → PF3D7_1200100 | –/erythrocyte membrane protein 1, PfEMP1 |
| NC_037284 | 23,001 | 17,100 bp x 9 | 100% | amplification | PF3D7_1200100–PF3D7_1200400 | PF3D7_1200100, PF3D7_1200200, PF3D7_1200200, PF3D7_1200300, PF3D7_1200300, PF3D7_1200400 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 43,801 | 40,100 bp x 4 | 100% | amplification | [PF3D7_1200500]–[PF3D7_1201100] | [PF3D7_1200500], PF3D7_1200500, PF3D7_1200600, PF3D7_1200600, PF3D7_1200610, PF3D7_1200700, PF3D7_1200800, PF3D7_1200800, PF3D7_1200800, PF3D7_1200900, PF3D7_1200900, PF3D7_1201000, PF3D7_1201000, [PF3D7_1201100] | |
| NC_037284 | 89,801 | 98,600 bp x 3 | 100% | amplification | PF3D7_1201200–PF3D7_1203700 | 104 genes PF3D7_1201200, PF3D7_1201200, PF3D7_1201300, PF3D7_1201400, PF3D7_1201400, PF3D7_1201500, PF3D7_1201600, PF3D7_1201700, PF3D7_1201800, PF3D7_1201900, PF3D7_1201900, PF3D7_1202000, PF3D7_1202000, PF3D7_1202000, PF3D7_1202000, PF3D7_1202000, PF3D7_1202000, PF3D7_1202000, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202100.1, PF3D7_1202200, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202300, PF3D7_1202400, PF3D7_1202400, PF3D7_1202400, PF3D7_1202400, PF3D7_1202400, PF3D7_1202400, PF3D7_1202400, PF3D7_1202400, PF3D7_1202500, PF3D7_1202600, PF3D7_1202600, PF3D7_1202600, PF3D7_1202600, PF3D7_1202600, PF3D7_1202600, PF3D7_1202700, PF3D7_1202700, PF3D7_1202700, PF3D7_1202700, PF3D7_1202700, PF3D7_1202800, PF3D7_1202800, PF3D7_1202800, PF3D7_1202900, PF3D7_1203000, PF3D7_1203100, PF3D7_1203100, PF3D7_1203200, PF3D7_1203200, PF3D7_1203300, PF3D7_1203400, PF3D7_1203500, PF3D7_1203600, PF3D7_1203600, PF3D7_1203600, PF3D7_1203700, PF3D7_1203700 |
|
| NC_037284 | 115,796 | A→T | ? | 100% | intergenic (+121/‑15) | PF3D7_1202100.1 → / → PF3D7_1202100.1 | SRAP domain‑containing protein, putative/SRAP domain‑containing protein, putative |
| NC_037284 | 115,797 | A→T | ? | 100% | intergenic (+122/‑14) | PF3D7_1202100.1 → / → PF3D7_1202100.1 | SRAP domain‑containing protein, putative/SRAP domain‑containing protein, putative |
| NC_037284 | 128,256 | Δ2 bp | ? | 100% | intergenic (+7/‑143) | PF3D7_1202300 → / → PF3D7_1202300 | dynein heavy chain, putative/dynein heavy chain, putative |
| NC_037284 | 137,609 | Δ6 bp | ? | 100% | coding (363‑368/2035 nt) | PF3D7_1202300 → | dynein heavy chain, putative |
| NC_037284 | 146,045 | T→C | ? | 100% | E414G (GAG→GGG) | PF3D7_1202500 ← | trimethylguanosine synthase, putative |
| NC_037284 | 194,401 | 11,600 bp x 2 | 100% | duplication | PF3D7_1203900–PF3D7_1204300 | PF3D7_1203900, PF3D7_1203900, PF3D7_1203900, PF3D7_1203900, PF3D7_1204000, PF3D7_1204000, PF3D7_1204000, PF3D7_1204000, PF3D7_1204000, PF3D7_1204000, PF3D7_1204000, PF3D7_1204100, PF3D7_1204200, PF3D7_1204300 | |
| NC_037284 | 197,152 | G→A | ? | 100% | intergenic (+1690/‑357) | PF3D7_1203900 → / → PF3D7_1204000 | ubiquitin‑conjugating enzyme E2/conserved Plasmodium protein, unknown function |
| NC_037284 | 198,593 | Δ8 bp | ? | 100% | intergenic (+108/‑40) | PF3D7_1204000 → / → PF3D7_1204000 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 202,893 | A→T | ? | 100% | intergenic (‑654/‑55) | PF3D7_1204100 ← / → PF3D7_1204200 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 203,118 | G→A | 100% | 100% | G57G (GGG→GGA) | PF3D7_1204200 → | conserved Plasmodium protein, unknown function |
| NC_037284 | 208,101 | 354,100 bp x 3 | 100% | amplification | PF3D7_1204400–PF3D7_1212700 | 212 genes PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204400, PF3D7_1204500, PF3D7_1204600, PF3D7_1204700, PF3D7_1204700, PF3D7_1204700, PF3D7_1204700, PF3D7_1204700, PF3D7_1204900, PF3D7_1204900, PF3D7_1204900, PF3D7_1204900, PF3D7_1204900, PF3D7_1204900, PF3D7_1205000, PF3D7_1205000, PF3D7_1205000, PF3D7_1205100, PF3D7_1205100, PF3D7_1205100, PF3D7_1205100, PF3D7_1205100, PF3D7_1205200, PF3D7_1205300, PF3D7_1205400, PF3D7_1205500, PF3D7_1205600, PF3D7_1205600, PF3D7_1205600, PF3D7_1205600, PF3D7_1205600, PF3D7_1205600, PF3D7_1205600, PF3D7_1205600, PF3D7_1205700, PF3D7_1205800, PF3D7_1205800, PF3D7_1205800, PF3D7_1205800, PF3D7_1205900, PF3D7_1206000, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206100, PF3D7_1206200, PF3D7_1206200, PF3D7_1206200, PF3D7_1206300, PF3D7_1206400, PF3D7_1206500, PF3D7_1206600, PF3D7_1206700, PF3D7_1206800, PF3D7_1206900, PF3D7_1206900, PF3D7_1206900, PF3D7_1206900, PF3D7_1207000, PF3D7_1207000, PF3D7_1207000, PF3D7_1207100, PF3D7_1207200, PF3D7_1207300, PF3D7_1207300, PF3D7_1207300, PF3D7_1207300, PF3D7_1207300, PF3D7_1207300, PF3D7_1207400, PF3D7_1207400, PF3D7_1207500, PF3D7_1207500, PF3D7_1207500, PF3D7_1207600, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207700, PF3D7_1207800, PF3D7_1207900, PF3D7_1207900, PF3D7_1208000, PF3D7_1208000, PF3D7_1208100, PF3D7_1208100, PF3D7_1208100, PF3D7_1208100, PF3D7_1208200, PF3D7_1208200, PF3D7_1208300, PF3D7_1208300, PF3D7_1208400, PF3D7_1208500, PF3D7_1208600, PF3D7_1208700, PF3D7_1208700, PF3D7_1208700, PF3D7_1208800, PF3D7_1208900, PF3D7_1209000, PF3D7_1209000, PF3D7_1209100, PF3D7_1209200, PF3D7_1209200, PF3D7_1209200, PF3D7_1209200, PF3D7_1209300, PF3D7_1209400, PF3D7_1209500.1, PF3D7_1209500.1, PF3D7_1209500.1, PF3D7_1209500.1, PF3D7_1209500.1, PF3D7_1209500.1, PF3D7_1209500.1, PF3D7_1209600, PF3D7_1209700, PF3D7_1209700, PF3D7_1209700, PF3D7_1209700, PF3D7_1209700, PF3D7_1209700, PF3D7_1209700, PF3D7_1209800, PF3D7_1209900, PF3D7_1210000, PF3D7_1210000, PF3D7_1210100, PF3D7_1210200, PF3D7_1210300, PF3D7_1210400, PF3D7_1210500, PF3D7_1210600, PF3D7_1210700, PF3D7_1210700, PF3D7_1210700, PF3D7_1210800, PF3D7_1210900, PF3D7_1210900, PF3D7_1210900, PF3D7_1210900, PF3D7_1210900, PF3D7_1210900, PF3D7_1210900, PF3D7_1210900, PF3D7_1211000, PF3D7_1211000, PF3D7_1211000, PF3D7_1211100, PF3D7_1211200, PF3D7_1211300, PF3D7_1211300, PF3D7_1211300, PF3D7_1211300, PF3D7_1211400, PF3D7_1211400, PF3D7_1211400, PF3D7_1211400, PF3D7_1211500, PF3D7_1211600, PF3D7_1211600, PF3D7_1211700, PF3D7_1211700, PF3D7_1211700, PF3D7_1211700, PF3D7_1211800, PF3D7_1211800, PF3D7_1211900, PF3D7_1212000, PF3D7_1212000, PF3D7_1212000, PF3D7_1212100, PF3D7_1212200, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212300, PF3D7_1212400, PF3D7_1212500, PF3D7_1212600.1, PF3D7_1212600.1, PF3D7_1212600.1, PF3D7_1212600.1, PF3D7_1212700 |
|
| NC_037284 | 252,505 | C→T | ? | 100% | intergenic (‑1106/‑650) | PF3D7_1205600 ← / → PF3D7_1205700 | tetratricopeptide repeat protein, putative/targeted glyoxalase II |
| NC_037284 | 308,173 | Δ1 bp | ? | 100% | intergenic (‑5347/‑41) | PF3D7_1206700 ← / → PF3D7_1206800 | eukaryotic translation initiation factor 5, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 308,178 | Δ1 bp | ? | 100% | intergenic (‑5352/‑36) | PF3D7_1206700 ← / → PF3D7_1206800 | eukaryotic translation initiation factor 5, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 308,183 | Δ1 bp | ? | 100% | intergenic (‑5357/‑31) | PF3D7_1206700 ← / → PF3D7_1206800 | eukaryotic translation initiation factor 5, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 308,189 | Δ1 bp | ? | 100% | intergenic (‑5363/‑25) | PF3D7_1206700 ← / → PF3D7_1206800 | eukaryotic translation initiation factor 5, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 308,193 | Δ3 bp | ? | 100% | intergenic (‑5367/‑19) | PF3D7_1206700 ← / → PF3D7_1206800 | eukaryotic translation initiation factor 5, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 347,873 | A→T | ? | 100% | intergenic (+634/‑401) | PF3D7_1207400 → / → PF3D7_1207500 | conserved Plasmodium protein, unknown function/RNA‑binding protein, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 361,607 | C→T | ? | 100% | intergenic (+1108/‑293) | PF3D7_1208000 → / → PF3D7_1208100 | apicoplast ribosomal protein L29 precursor, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 403,284 | C→T | ? | 100% | intergenic (+757/‑66) | PF3D7_1208600 → / → PF3D7_1208700 | mitochondrial import inner membrane translocase subunit TIM10, putative/conserved protein, unknown function |
| NC_037284 | 414,430 | Δ2 bp | ? | 100% | intergenic (‑5280/‑973) | PF3D7_1208800 ← / → PF3D7_1208900 | zinc finger protein, putative/protein phosphatase PPM11, putative |
| NC_037284 | 479,195 | Δ2 bp | ? | 100% | intergenic (‑825/+293) | PF3D7_1210700 ← / ← PF3D7_1210800 | conserved Plasmodium protein, unknown function/small nucleolar RNA snoR14 |
| NC_037284 | 524,018 | Δ2 bp | ? | 100% | intergenic (+66/‑171) | PF3D7_1211700 → / → PF3D7_1211700 | DNA replication licensing factor MCM5, putative/DNA replication licensing factor MCM5, putative |
| NC_037284 | 535,592 | A→T | ? | 100% | intergenic (‑191/+27) | PF3D7_1212000 ← / ← PF3D7_1212000 | glutathione peroxidase‑like thioredoxin peroxidase/glutathione peroxidase‑like thioredoxin peroxidase |
| NC_037284 | 535,600 | A→T | ? | 100% | intergenic (‑199/+19) | PF3D7_1212000 ← / ← PF3D7_1212000 | glutathione peroxidase‑like thioredoxin peroxidase/glutathione peroxidase‑like thioredoxin peroxidase |
| NC_037284 | 552,051 | +TATTA | ? | 100% | intergenic (+1141/+51) | PF3D7_1212400 → / ← PF3D7_1212500 | tetratricopeptide repeat protein, putative/glycerol‑3‑phosphate 1‑O‑acyltransferase |
| NC_037284 | 566,001 | 157,500 bp x 3 | 100% | amplification | [PF3D7_1212800]–PF3D7_1218400 | 124 genes [PF3D7_1212800], PF3D7_1212900, PF3D7_1213000, PF3D7_1213100, PF3D7_1213200, PF3D7_1213300, PF3D7_1213300, PF3D7_1213400, PF3D7_1213500, PF3D7_1213500, PF3D7_1213600, PF3D7_1213700, PF3D7_1213700, PF3D7_1213700, PF3D7_1213800, PF3D7_1213900, PF3D7_1213900, PF3D7_1214000, PF3D7_1214000, PF3D7_1214100, PF3D7_1214100, PF3D7_1214100, PF3D7_1214100, PF3D7_1214200, PF3D7_1214200, PF3D7_1214300, PF3D7_1214300, PF3D7_1214400, PF3D7_1214400, PF3D7_1214500, PF3D7_1214500, PF3D7_1214500, PF3D7_1214500, PF3D7_1214500, PF3D7_1214500, PF3D7_1214600, PF3D7_1214600, PF3D7_1214600, PF3D7_1214600, PF3D7_1214600, PF3D7_1214700, PF3D7_1214800, PF3D7_1214800, PF3D7_1214800, PF3D7_1214900, PF3D7_1214900, PF3D7_1214900, PF3D7_1214900, PF3D7_1214900, PF3D7_1215000, PF3D7_1215100, PF3D7_1215100, PF3D7_1215200, PF3D7_1215300, PF3D7_1215300, PF3D7_1215300, PF3D7_1215400, PF3D7_1215500, PF3D7_1215500, PF3D7_1215500, PF3D7_1215600, PF3D7_1215700, PF3D7_1215800, PF3D7_1215900, PF3D7_1216000, PF3D7_1216100, PF3D7_1216200, PF3D7_1216200, PF3D7_1216200, PF3D7_1216200, PF3D7_1216200, PF3D7_1216300, PF3D7_1216400, PF3D7_1216500, PF3D7_1216600, PF3D7_1216700, PF3D7_1216800, PF3D7_1216900, PF3D7_1217000, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217100.1, PF3D7_1217200, PF3D7_1217300, PF3D7_1217400, PF3D7_1217500, PF3D7_1217600, PF3D7_1217700, PF3D7_1217800, PF3D7_1217900, PF3D7_1217900, PF3D7_1217900, PF3D7_1218000, PF3D7_1218100, PF3D7_1218100, PF3D7_1218100, PF3D7_1218100, PF3D7_1218100, PF3D7_1218200, PF3D7_1218200, PF3D7_1218200, PF3D7_1218300, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400, PF3D7_1218400 |
|
| NC_037284 | 611,450 | +ATAT | 100% | intergenic (‑681/‑442) | PF3D7_1214400 ← / → PF3D7_1214500 | ER membrane protein complex subunit 6, putative/conserved Plasmodium protein, unknown function | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 622,696 | T→A | ? | 100% | intergenic (+921/‑430) | PF3D7_1215000 → / → PF3D7_1215100 | thioredoxin peroxidase 2/SUN domain‑containing protein, putative |
| NC_037284 | 648,621 | +A | ? | 100% | intergenic (+761/‑268) | PF3D7_1216100 → / → PF3D7_1216200 | conserved protein, unknown function/glycerol‑3‑phosphate dehydrogenase [NAD(+)], putative |
| NC_037284 | 674,288 | A→T | ? | 100% | intergenic (+1022/+61) | PF3D7_1216900 → / ← PF3D7_1217000 | DNA‑binding chaperone, putative/conserved protein, unknown function |
| NC_037284 | 674,291 | A→T | ? | 100% | intergenic (+1025/+58) | PF3D7_1216900 → / ← PF3D7_1217000 | DNA‑binding chaperone, putative/conserved protein, unknown function |
| NC_037284 | 674,304 | A→T | ? | 100% | intergenic (+1038/+45) | PF3D7_1216900 → / ← PF3D7_1217000 | DNA‑binding chaperone, putative/conserved protein, unknown function |
| NC_037284 | 677,727 | G→A | ? | 100% | intergenic (‑151/‑875) | PF3D7_1217100.1 ← / → PF3D7_1217200 | meiotic recombination protein SPO11, putative/multiple RNA‑binding domain‑containing protein 1, putative |
| NC_037284 | 678,141 | G→A | ? | 100% | intergenic (‑565/‑461) | PF3D7_1217100.1 ← / → PF3D7_1217200 | meiotic recombination protein SPO11, putative/multiple RNA‑binding domain‑containing protein 1, putative |
| NC_037284 | 697,971 | C→T | ? | 100% | E163K (GAA→AAA) | PF3D7_1217700 ← | conserved Plasmodium protein, unknown function |
| NC_037284 | 697,977 | C→T | ? | 100% | E161K (GAA→AAA) | PF3D7_1217700 ← | conserved Plasmodium protein, unknown function |
| NC_037284 | 720,719 | G→T | ? | 100% | intergenic (+899/+167) | PF3D7_1218300 → / ← PF3D7_1218400 | AP‑2 complex subunit mu, putative/triose or hexose phosphate/phosphate translocator, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 723,790 | G→T | 100% | intergenic (‑342/+2051) | PF3D7_1218400 ← / ← PF3D7_1218500 | triose or hexose phosphate/phosphate translocator, putative/dynamin‑like protein, putative | |
| NC_037284 | 725,103 | +A | ? | 100% | intergenic (‑1655/+738) | PF3D7_1218400 ← / ← PF3D7_1218500 | triose or hexose phosphate/phosphate translocator, putative/dynamin‑like protein, putative |
| NC_037284 | 725,795 | (A)21→20 | 100% | intergenic (‑2347/+46) | PF3D7_1218400 ← / ← PF3D7_1218500 | triose or hexose phosphate/phosphate translocator, putative/dynamin‑like protein, putative | |
| NC_037284 | 726,501 | 3,400 bp x 5 | 100% | amplification | PF3D7_1218500–PF3D7_1218500 | PF3D7_1218500, PF3D7_1218500 | |
| NC_037284 | 733,001 | 35,100 bp x 3 | 100% | amplification | PF3D7_1218600–PF3D7_1219300 | 17 genes PF3D7_1218600, PF3D7_1218600, PF3D7_1218600, PF3D7_1218700, PF3D7_1218800, PF3D7_1218800, PF3D7_1218800, PF3D7_1218800, PF3D7_1218800, PF3D7_1218800, PF3D7_1218800, PF3D7_1218800, PF3D7_1218900, PF3D7_1219000, PF3D7_1219100, PF3D7_1219200, PF3D7_1219300 |
|
| NC_037284 | 768,901 | 11,100 bp x 8 | 100% | amplification | [PF3D7_1219300]–PF3D7_1219400 | [PF3D7_1219300], PF3D7_1219400, PF3D7_1219400, PF3D7_1219400 | |
| NC_037284 | 784,001 | 91,000 bp x 3 | 100% | amplification | PF3D7_1219500–PF3D7_1221900 | 67 genes PF3D7_1219500, PF3D7_1219600, PF3D7_1219600, PF3D7_1219600, PF3D7_1219600, PF3D7_1219700, PF3D7_1219800, PF3D7_1219900, PF3D7_1220000, PF3D7_1220100, PF3D7_1220200, PF3D7_1220200, PF3D7_1220200, PF3D7_1220200, PF3D7_1220200, PF3D7_1220200, PF3D7_1220200, PF3D7_1220200, PF3D7_1220300, PF3D7_1220300, PF3D7_1220300, PF3D7_1220300, PF3D7_1220300, PF3D7_1220400, PF3D7_1220500, PF3D7_1220600, PF3D7_1220600, PF3D7_1220600, PF3D7_1220600, PF3D7_1220700, PF3D7_1220700, PF3D7_1220700, PF3D7_1220700, PF3D7_1220700, PF3D7_1220700, PF3D7_1220900, PF3D7_1221000, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221100.1, PF3D7_1221200, PF3D7_1221200, PF3D7_1221200, PF3D7_1221200, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221300, PF3D7_1221400, PF3D7_1221500, PF3D7_1221600, PF3D7_1221700, PF3D7_1221700, PF3D7_1221800, PF3D7_1221900 |
|
| NC_037284 | 876,901 | 9,200 bp x 3 | 100% | amplification | PF3D7_1222000–PF3D7_1222300 | PF3D7_1222000, PF3D7_1222100, PF3D7_1222200, PF3D7_1222300 | |
| NC_037284 | 890,401 | 7,400 bp x 3 | 100% | amplification | [PF3D7_1222400] | [PF3D7_1222400] | |
| NC_037284 | 907,001 | 793,800 bp x 3 | 100% | amplification | PF3D7_1222600–PF3D7_1240300 | 476 genes PF3D7_1222600, PF3D7_1222700, PF3D7_1222800, PF3D7_1222800, PF3D7_1222800, PF3D7_1222800, PF3D7_1222800, PF3D7_1222800, PF3D7_1222800, PF3D7_1222900, PF3D7_1222900, PF3D7_1223000, PF3D7_1223000, PF3D7_1223000, PF3D7_1223000, PF3D7_1223100, PF3D7_1223100, PF3D7_1223100, PF3D7_1223200, PF3D7_1223300, PF3D7_1223400, PF3D7_1223400, PF3D7_1223400, PF3D7_1223400, PF3D7_1223400, PF3D7_1223400, PF3D7_1223500, PF3D7_1223500, PF3D7_1223500, PF3D7_1223500, PF3D7_1223600, PF3D7_1223600, PF3D7_1223700, PF3D7_1223700, PF3D7_1223800, PF3D7_1223900, PF3D7_1224000, PF3D7_1224100, PF3D7_1224100, PF3D7_1224100, PF3D7_1224100, PF3D7_1224200, PF3D7_1224200, PF3D7_1224200, PF3D7_1224200, PF3D7_1224200, PF3D7_1224300, PF3D7_1224400, PF3D7_1224400, PF3D7_1224500, PF3D7_1224500, PF3D7_1224600, PF3D7_1224600, PF3D7_1224600, PF3D7_1224600, PF3D7_1224600, PF3D7_1224700, PF3D7_1224800, PF3D7_1224900, PF3D7_1224900, PF3D7_1225000, PF3D7_1225000, PF3D7_1225000, PF3D7_1225100, PF3D7_1225100, PF3D7_1225100, PF3D7_1225100, PF3D7_1225200, PF3D7_1225300, PF3D7_1225300, PF3D7_1225400, PF3D7_1225500, PF3D7_1225500, PF3D7_1225600, PF3D7_1225600, PF3D7_1225600, PF3D7_1225600, PF3D7_1225600, PF3D7_1225700, PF3D7_1225800, PF3D7_1225800, PF3D7_1225800, PF3D7_1225900, PF3D7_1226000, PF3D7_1226000, PF3D7_1226100, PF3D7_1226200, PF3D7_1226300, PF3D7_1226400, PF3D7_1226400, PF3D7_1226400, PF3D7_1226400, PF3D7_1226400, PF3D7_1226500, PF3D7_1226600, PF3D7_1226600, PF3D7_1226700, PF3D7_1226800, PF3D7_1226800, PF3D7_1226800, PF3D7_1226800, PF3D7_1226800, PF3D7_1226900, PF3D7_1227000, PF3D7_1227100, PF3D7_1227200, PF3D7_1227200, PF3D7_1227300, PF3D7_1227400, PF3D7_1227500, PF3D7_1227500, PF3D7_1227600, PF3D7_1227600, PF3D7_1227700, PF3D7_1227700, PF3D7_1227700, PF3D7_1227800, PF3D7_1227900, PF3D7_1228000, PF3D7_1228100, PF3D7_1228100, PF3D7_1228100, PF3D7_1228200, PF3D7_1228300, PF3D7_1228300, PF3D7_1228400, PF3D7_1228500, PF3D7_1228500, PF3D7_1228500, PF3D7_1228600, PF3D7_1228700, PF3D7_1228700, PF3D7_1228800, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1228900, PF3D7_1229000, PF3D7_1229100, PF3D7_1229200, PF3D7_1229300, PF3D7_1229400, PF3D7_1229400, PF3D7_1229500, PF3D7_1229500, PF3D7_1229600, PF3D7_1229600, PF3D7_1229700, PF3D7_1229700, PF3D7_1229700, PF3D7_1229800, PF3D7_1229800, PF3D7_1229800, PF3D7_1229800, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1229900.1, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230000, PF3D7_1230100, PF3D7_1230200, PF3D7_1230200, PF3D7_1230200, PF3D7_1230300, PF3D7_1230300, PF3D7_1230400, PF3D7_1230400, PF3D7_1230400, PF3D7_1230400, PF3D7_1230400, PF3D7_1230500, PF3D7_1230600, PF3D7_1230600, PF3D7_1230700, PF3D7_1230800, PF3D7_1230800, PF3D7_1230900, PF3D7_1231000, PF3D7_1231000, PF3D7_1231000, PF3D7_1231000, PF3D7_1231000, PF3D7_1231000, PF3D7_1231000, PF3D7_1231000, PF3D7_1231100, PF3D7_1231100, PF3D7_1231100, PF3D7_1231100, PF3D7_1231100, PF3D7_1231100, PF3D7_1231100, PF3D7_1231200, PF3D7_1231300, PF3D7_1231400, PF3D7_1231400, PF3D7_1231400, PF3D7_1231500, PF3D7_1231600, PF3D7_1231700, PF3D7_1231700, PF3D7_1231800, PF3D7_1231900, PF3D7_1232000, PF3D7_1232000, PF3D7_1232100, PF3D7_1232100, PF3D7_1232200, PF3D7_1232200, PF3D7_1232300, PF3D7_1232300, PF3D7_1232300, PF3D7_1232400, PF3D7_1232500, PF3D7_1232500, PF3D7_1232600, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232700, PF3D7_1232800, PF3D7_1232800, PF3D7_1232800, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1232900, PF3D7_1233000, PF3D7_1233050, PF3D7_1233050, PF3D7_1233100, PF3D7_1233200.1, PF3D7_1233200.1, PF3D7_1233200.1, PF3D7_1233200.1, PF3D7_1233300, PF3D7_1233400, PF3D7_1233400, PF3D7_1233400, PF3D7_1233400, PF3D7_1233600, PF3D7_1233600, PF3D7_1233600, PF3D7_1233700, PF3D7_1233800, PF3D7_1233800, PF3D7_1233800, PF3D7_1233900, PF3D7_1233900, PF3D7_1233900, PF3D7_1234000, PF3D7_1234000, PF3D7_1234100, PF3D7_1234200, PF3D7_1234200, PF3D7_1234200, PF3D7_1234300, PF3D7_1234300, PF3D7_1234400, PF3D7_1234400, PF3D7_1234400, PF3D7_1234400, PF3D7_1234400, PF3D7_1234400, PF3D7_1234500, PF3D7_1234600, PF3D7_1234700, PF3D7_1234700, PF3D7_1234800, PF3D7_1234800, PF3D7_1234800, PF3D7_1234800, PF3D7_1234800, PF3D7_1234900, PF3D7_1234900, PF3D7_1234900, PF3D7_1235000, PF3D7_1235000, PF3D7_1235000, PF3D7_1235100, PF3D7_1235100, PF3D7_1235200, PF3D7_1235200, PF3D7_1235300, PF3D7_1235400, PF3D7_1235500, PF3D7_1235600, PF3D7_1235600, PF3D7_1235600, PF3D7_1235700, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235800, PF3D7_1235900, PF3D7_1235900, PF3D7_1235900, PF3D7_1235900, PF3D7_1235900, PF3D7_1236000, PF3D7_1236100, PF3D7_1236200, PF3D7_1236300, PF3D7_1236400, PF3D7_1236400, PF3D7_1236400, PF3D7_1236500, PF3D7_1236600, PF3D7_1236600, PF3D7_1236650, PF3D7_1236650, PF3D7_1236700, PF3D7_1236800, PF3D7_1236800, PF3D7_1236800, PF3D7_1236900, PF3D7_1236900, PF3D7_1236900, PF3D7_1237000, PF3D7_1237000, PF3D7_1237100, PF3D7_1237200, PF3D7_1237300, PF3D7_1237300, PF3D7_1237300, PF3D7_1237400, PF3D7_1237400, PF3D7_1237400, PF3D7_1237500, PF3D7_1237600, PF3D7_1237600, PF3D7_1237600, PF3D7_1237700, PF3D7_1237700, PF3D7_1237800, PF3D7_1237800, PF3D7_1237900, PF3D7_1238000, PF3D7_1238000, PF3D7_1238000, PF3D7_1238100, PF3D7_1238200, PF3D7_1238200, PF3D7_1238300, PF3D7_1238400, PF3D7_1238400, PF3D7_1238400, PF3D7_1238400, PF3D7_1238400, PF3D7_1238500, PF3D7_1238500, PF3D7_1238500, PF3D7_1238600, PF3D7_1238700, PF3D7_1238700, PF3D7_1238700, PF3D7_1238700, PF3D7_1238700, PF3D7_1238800, PF3D7_1238900, PF3D7_1239000, PF3D7_1239100, PF3D7_1239100, PF3D7_1239200, PF3D7_1239300, PF3D7_1239400, PF3D7_1239500, PF3D7_1239600, PF3D7_1239700, PF3D7_1239800, PF3D7_1239900, PF3D7_1240000, PF3D7_1240100, PF3D7_1240200, PF3D7_1240200, PF3D7_1240200, PF3D7_1240200, PF3D7_1240300 |
|
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 922,013 | Δ4 bp | 100% | intergenic (‑29/+131) | PF3D7_1222800 ← / ← PF3D7_1222800 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037284 | 922,044 | (TAAA)8→7 | 100% | intergenic (‑60/+100) | PF3D7_1222800 ← / ← PF3D7_1222800 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037284 | 962,547 | A→T | ? | 100% | intergenic (‑1578/+84) | PF3D7_1223500 ← / ← PF3D7_1223600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 966,812 | +AT | 100% | intergenic (‑35/+144) | PF3D7_1223600 ← / ← PF3D7_1223600 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function | |
| NC_037284 | 1,000,413 | C→T | ? | 100% | intergenic (+1138/+266) | PF3D7_1224500 → / ← PF3D7_1224600 | histone chaperone ASF1, putative/cytochrome c heme lyase, putative |
| NC_037284 | 1,085,063 | Δ4 bp | ? | 100% | intergenic (+1955/‑321) | PF3D7_1226700 → / → PF3D7_1226800 | uncharacterized protein/ataxin‑3, putative |
| NC_037284 | 1,104,189 | A→T | 100% | intergenic (+187/‑8) | PF3D7_1227200 → / → PF3D7_1227200 | potassium channel K1/potassium channel K1 | |
| NC_037284 | 1,123,718 | A→T | ? | 100% | intergenic (‑2625/‑1070) | PF3D7_1227500 ← / → PF3D7_1227600 | protein SOC2, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,128,735 | C→T | ? | 100% | intergenic (+395/+204) | PF3D7_1227600 → / ← PF3D7_1227700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,128,738 | G→T | ? | 100% | intergenic (+398/+201) | PF3D7_1227600 → / ← PF3D7_1227700 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 1,140,440 | A→T | ? | 100% | intergenic (+138/‑503) | PF3D7_1227900 → / → PF3D7_1228000 | RNA pseudouridylate synthase, putative/conserved protein, unknown function |
| NC_037284 | 1,181,910 | Δ2 bp | ? | 100% | intergenic (‑57/+58) | PF3D7_1228900 ← / ← PF3D7_1228900 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,202,126 | +TTTTA | ? | 100% | intergenic (‑2912/‑1456) | PF3D7_1229100 ← / → PF3D7_1229200 | multidrug resistance‑associated protein 2/uncharacterized ncRNA |
| NC_037284 | 1,230,496 | C→T | ? | 100% | intergenic (‑171/+15) | PF3D7_1229900.1 ← / ← PF3D7_1229900.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,231,522 | C→T | ? | 100% | intergenic (‑130/+28) | PF3D7_1229900.1 ← / ← PF3D7_1229900.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,231,527 | C→T | ? | 100% | intergenic (‑135/+23) | PF3D7_1229900.1 ← / ← PF3D7_1229900.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,231,532 | A→T | ? | 100% | intergenic (‑140/+18) | PF3D7_1229900.1 ← / ← PF3D7_1229900.1 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,261,120 | Δ21 bp | 100% | coding (1501‑1521/2469 nt) | PF3D7_1230700 → | protein transport protein SEC13 | |
| NC_037284 | 1,261,140 | T→C | 100% | Δ | N507N (AAT→AAC) | PF3D7_1230700 → | protein transport protein SEC13 |
| NC_037284 | 1,263,057 | G→A | ? | 100% | intergenic (+969/‑604) | PF3D7_1230700 → / → PF3D7_1230800 | protein transport protein SEC13/pre‑mRNA‑splicing regulator, putative |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 1,265,894 | T→A | ? | 100% | intergenic (+301/‑1474) | PF3D7_1230800 → / → PF3D7_1230900 | pre‑mRNA‑splicing regulator, putative/serine/threonine protein kinase RIO1, putative |
| NC_037284 | 1,265,899 | T→A | ? | 100% | intergenic (+306/‑1469) | PF3D7_1230800 → / → PF3D7_1230900 | pre‑mRNA‑splicing regulator, putative/serine/threonine protein kinase RIO1, putative |
| NC_037284 | 1,275,582 | G→T | ? | 100% | intergenic (+727/‑675) | PF3D7_1231000 → / → PF3D7_1231100 | conserved Plasmodium protein, unknown function/ras‑related protein Rab‑2 |
| NC_037284 | 1,275,588 | G→T | ? | 100% | intergenic (+733/‑669) | PF3D7_1231000 → / → PF3D7_1231100 | conserved Plasmodium protein, unknown function/ras‑related protein Rab‑2 |
| NC_037284 | 1,364,332 | C→T | ? | 100% | K2102K (AAG→AAA) K2102K (AAG→AAA) |
PF3D7_1233200.1 ← PF3D7_1233200.1 ← |
conserved Plasmodium protein, unknown function conserved Plasmodium protein, unknown function |
| NC_037284 | 1,407,073 | C→T | ? | 100% | intergenic (‑1105/‑601) | PF3D7_1233800 ← / → PF3D7_1233900 | conserved protein, unknown function/SUMO‑specific protease 1 |
| NC_037284 | 1,414,358 | A→T | ? | 100% | intergenic (‑1254/‑56) | PF3D7_1234000 ← / → PF3D7_1234100 | conserved Plasmodium protein, unknown function/bromodomain protein, putative |
| NC_037284 | 1,414,363 | A→T | ? | 100% | intergenic (‑1259/‑51) | PF3D7_1234000 ← / → PF3D7_1234100 | conserved Plasmodium protein, unknown function/bromodomain protein, putative |
| NC_037284 | 1,426,837 | A→T | ? | 100% | intergenic (+733/‑561) | PF3D7_1234100 → / → PF3D7_1234200 | bromodomain protein, putative/helicase, putative, pseudogene |
| NC_037284 | 1,439,472 | G→A | ? | 100% | intergenic (‑123/+424) | PF3D7_1234400 ← / ← PF3D7_1234500 | microgamete surface protein MiGS, putative/conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 1,468,805 | G→A | ? | 100% | intergenic (‑1233/‑1908) | PF3D7_1235200 ← / → PF3D7_1235300 | V‑type K+‑independent H+‑translocating inorganic pyrophosphatase/CCR4‑NOT transcription complex subunit 4, putative |
| NC_037284 | 1,489,549 | Δ1 bp | ? | 100% | intergenic (‑69/+22) | PF3D7_1235800 ← / ← PF3D7_1235800 | conserved Plasmodium protein, unknown function/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,504,703 | Δ1 bp | 100% | intergenic (+635/+2229) | PF3D7_1236000 → / ← PF3D7_1236100 | vesicle transport v‑SNARE protein VTI1, putative/clustered‑asparagine‑rich protein | |
| NC_037284 | 1,509,219 | Δ1 bp | ? | 100% | intergenic (‑950/+2981) | PF3D7_1236100 ← / ← PF3D7_1236200 | clustered‑asparagine‑rich protein/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,512,094 | A→T | ? | 100% | intergenic (‑3825/+106) | PF3D7_1236100 ← / ← PF3D7_1236200 | clustered‑asparagine‑rich protein/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,512,101 | A→T | ? | 100% | intergenic (‑3832/+99) | PF3D7_1236100 ← / ← PF3D7_1236200 | clustered‑asparagine‑rich protein/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,512,108 | A→T | ? | 100% | intergenic (‑3839/+92) | PF3D7_1236100 ← / ← PF3D7_1236200 | clustered‑asparagine‑rich protein/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,614,846 | +AT | 100% | intergenic (+2105/+477) | PF3D7_1238800 → / ← PF3D7_1238900 | acyl‑CoA synthetase/protein kinase 2 | |
| NC_037284 | 1,624,567 | Δ4 bp | ? | 100% | intergenic (‑862/‑2203) | PF3D7_1239000 ← / → PF3D7_1239100 | HD superfamily phosphohydrolase protein, putative/mitochondrial ribosomal protein L23 precursor, putative |
| NC_037284 | 1,701,701 | 8,300 bp x 8 | 100% | amplification | PF3D7_1240300–PF3D7_1240400 | PF3D7_1240300, PF3D7_1240400 | |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 1,703,603 | Δ1 bp | ? | 100% | intergenic (+516/‑909) | PF3D7_1240300 → / → PF3D7_1240400 | erythrocyte membrane protein 1, PfEMP1/erythrocyte membrane protein 1, PfEMP1 |
| NC_037284 | 1,711,001 | 1,500 bp x 9 | 100% | amplification | PF3D7_1240400 | PF3D7_1240400 | |
| NC_037284 | 1,719,001 | 22,100 bp x 6 | 100% | amplification | PF3D7_1240600–PF3D7_1240900 | PF3D7_1240600, PF3D7_1240600, PF3D7_1240700, PF3D7_1240700, PF3D7_1240700, PF3D7_1240700, PF3D7_1240800, PF3D7_1240900 | |
| NC_037284 | 1,741,901 | 139,500 bp x 2 | 100% | duplication | PF3D7_1240900–[PF3D7_1245000] | 108 genes PF3D7_1240900, PF3D7_1241000, PF3D7_1241100, PF3D7_1241100, PF3D7_1241200, PF3D7_1241200, PF3D7_1241200, PF3D7_1241300, PF3D7_1241400, PF3D7_1241500, PF3D7_1241600, PF3D7_1241600, PF3D7_1241600, PF3D7_1241600, PF3D7_1241600, PF3D7_1241600, PF3D7_1241600, PF3D7_1241700, PF3D7_1241700, PF3D7_1241800, PF3D7_1241900, PF3D7_1242000, PF3D7_1242100, PF3D7_1242200, PF3D7_1242300, PF3D7_1242300, PF3D7_1242300, PF3D7_1242300, PF3D7_1242300, PF3D7_1242300, PF3D7_1242300, PF3D7_1242400, PF3D7_1242400, PF3D7_1242400, PF3D7_1242400, PF3D7_1242500, PF3D7_1242600, PF3D7_1242600, PF3D7_1242700, PF3D7_1242700, PF3D7_1242800, PF3D7_1242800, PF3D7_1242800, PF3D7_1242800, PF3D7_1242900, PF3D7_1242900, PF3D7_1242900, PF3D7_1243000, PF3D7_1243100, PF3D7_1243200, PF3D7_1243300, PF3D7_1243300, PF3D7_1243400, PF3D7_1243500, PF3D7_1243500, PF3D7_1243500, PF3D7_1243500, PF3D7_1243500, PF3D7_1243500, PF3D7_1243500, PF3D7_1243500, PF3D7_1243600, PF3D7_1243600, PF3D7_1243600, PF3D7_1243700, PF3D7_1243800, PF3D7_1243800, PF3D7_1243800, PF3D7_1243800, PF3D7_1243900, PF3D7_1243900, PF3D7_1243900, PF3D7_1243900, PF3D7_1243900, PF3D7_1243900, PF3D7_1244000, PF3D7_1244000, PF3D7_1244000, PF3D7_1244100, PF3D7_1244100, PF3D7_1244100, PF3D7_1244100, PF3D7_1244100, PF3D7_1244200, PF3D7_1244300, PF3D7_1244400, PF3D7_1244400, PF3D7_1244500, PF3D7_1244600, PF3D7_1244700, PF3D7_1244700, PF3D7_1244700, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244800, PF3D7_1244900, PF3D7_1244900, PF3D7_1244900, PF3D7_1244900, PF3D7_1244900, PF3D7_1244900, [PF3D7_1245000] |
|
| NC_037284 | 1,756,359 | +T | 100% | intergenic (‑122/+1158) | PF3D7_1241200 ← / ← PF3D7_1241300 | conserved Plasmodium protein, unknown function/ribosome‑binding factor A, putative | |
| NC_037284 | 1,759,936 | Δ4 bp | ? | 100% | intergenic (‑737/+477) | PF3D7_1241300 ← / ← PF3D7_1241400 | ribosome‑binding factor A, putative/RNA‑binding protein, putative |
| NC_037284 | 1,776,291 | T→A | ? | 100% | intergenic (+10/‑151) | PF3D7_1241600 → / → PF3D7_1241600 | mitochondrial carrier protein, putative/mitochondrial carrier protein, putative |
| NC_037284 | 1,789,321 | Δ2 bp | ? | 100% | intergenic (‑490/‑1235) | PF3D7_1242000 ← / → PF3D7_1242100 | sulfhydryl oxidase, putative/conserved Plasmodium protein, unknown function |
| NC_037284 | 1,836,712 | T→A | ? | 100% | intergenic (‑64/+288) | PF3D7_1243900 ← / ← PF3D7_1243900 | uncharacterized protein/uncharacterized protein |
| NC_037284 | 1,870,983 | Δ1 bp | ? | 100% | intergenic (‑1452/‑936) | PF3D7_1244600 ← / → PF3D7_1244700 | ADP‑ribosylation factor GTPase‑activating protein/conserved protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 1,882,245 | A→T | ? | 100% | intergenic (‑839/‑1224) | PF3D7_1245000 ← / → PF3D7_1245100 | 5‑formyltetrahydrofolate cyclo‑ligase, putative/kinesin‑13, putative |
| NC_037284 | 1,883,366 | C→T | ? | 100% | intergenic (‑1960/‑103) | PF3D7_1245000 ← / → PF3D7_1245100 | 5‑formyltetrahydrofolate cyclo‑ligase, putative/kinesin‑13, putative |
| NC_037284 | 1,883,701 | 38,200 bp x 3 | 100% | amplification | PF3D7_1245100–[PF3D7_1246200] | 31 genes PF3D7_1245100, PF3D7_1245200, PF3D7_1245300, PF3D7_1245300, PF3D7_1245300, PF3D7_1245300, PF3D7_1245400, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245500, PF3D7_1245600, PF3D7_1245700, PF3D7_1245800, PF3D7_1245800, PF3D7_1245800, PF3D7_1245900, PF3D7_1246000, PF3D7_1246000, PF3D7_1246000, PF3D7_1246000, PF3D7_1246100, PF3D7_1246100, [PF3D7_1246200] |
|
| NC_037284 | 1,926,001 | 3,500 bp x 3 | 100% | amplification | PF3D7_1246300–PF3D7_1246300 | PF3D7_1246300, PF3D7_1246300, PF3D7_1246300, PF3D7_1246300, PF3D7_1246300, PF3D7_1246300, PF3D7_1246300, PF3D7_1246300, PF3D7_1246300 | |
| NC_037284 | 1,929,694 | G→T | ? | 100% | intergenic (+256/‑2276) | PF3D7_1246300 → / → PF3D7_1246400 | clathrin adaptor domain‑containing protein, putative/myosin A tail domain interacting protein |
| NC_037284 | 1,930,070 | +AT | ? | 100% | intergenic (+632/‑1900) | PF3D7_1246300 → / → PF3D7_1246400 | clathrin adaptor domain‑containing protein, putative/myosin A tail domain interacting protein |
| NC_037284 | 1,931,901 | 50,800 bp x 3 | 100% | amplification | PF3D7_1246400–[PF3D7_1248400] | 45 genes PF3D7_1246400, PF3D7_1246500, PF3D7_1246600, PF3D7_1246700, PF3D7_1246800, PF3D7_1246800, PF3D7_1246800, PF3D7_1246800, PF3D7_1246900, PF3D7_1246900, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247000.1, PF3D7_1247100, PF3D7_1247100, PF3D7_1247200, PF3D7_1247300, PF3D7_1247300, PF3D7_1247400, PF3D7_1247500, PF3D7_1247600, PF3D7_1247700, PF3D7_1247800, PF3D7_1247800, PF3D7_1247800, PF3D7_1247800, PF3D7_1247800, PF3D7_1247800, PF3D7_1247800, PF3D7_1247800, PF3D7_1247900, PF3D7_1248000, PF3D7_1248100, PF3D7_1248200, PF3D7_1248300, [PF3D7_1248400] |
|
| NC_037284 | 1,995,501 | 5,400 bp x 6 | 100% | amplification | [PF3D7_1248700] | [PF3D7_1248700] | |
| NC_037284 | 1,996,122 | Δ27 bp | 100% | coding (1348‑1374/5970 nt) | PF3D7_1248700 → | conserved Plasmodium protein, unknown function | |
| NC_037284 | 1,996,148 | G→A | 100% | Δ | E458E (GAG→GAA) | PF3D7_1248700 → | conserved Plasmodium protein, unknown function |
| seq id | position | mutation | output | 3-1-1-1-GATK | annotation | gene | description |
| NC_037284 | 2,002,601 | 51,800 bp x 3 | 100% | amplification | PF3D7_1248900–[PF3D7_1250100] | 26 genes PF3D7_1248900, PF3D7_1249000, PF3D7_1249100, PF3D7_1249100, PF3D7_1249100, PF3D7_1249200, PF3D7_1249200, PF3D7_1249300, PF3D7_1249400, PF3D7_1249500, PF3D7_1249500, PF3D7_1249500, PF3D7_1249500, PF3D7_1249500, PF3D7_1249600, PF3D7_1249600, PF3D7_1249600, PF3D7_1249700, PF3D7_1249800, PF3D7_1249800, PF3D7_1249800, PF3D7_1249800, PF3D7_1249800, PF3D7_1249900, PF3D7_1250000, [PF3D7_1250100] |
|
| NC_037284 | 2,011,387 | C→T | ? | 100% | intergenic (+286/‑1256) | PF3D7_1249200 → / → PF3D7_1249300 | conserved Plasmodium protein, unknown function/protein phosphatase PPM4, putative |
| NC_037284 | 2,012,425 | G→T | 100% | 100% | intergenic (+1324/‑218) | PF3D7_1249200 → / → PF3D7_1249300 | conserved Plasmodium protein, unknown function/protein phosphatase PPM4, putative |
| NC_037284 | 2,059,001 | 184,000 bp x 3 | 100% | amplification | PF3D7_1250200–PF3D7_1255200 | 120 genes PF3D7_1250200, PF3D7_1250200, PF3D7_1250200, PF3D7_1250200, PF3D7_1250200, PF3D7_1250200, PF3D7_1250300, PF3D7_1250300, PF3D7_1250400, PF3D7_1250500, PF3D7_1250500, PF3D7_1250500, PF3D7_1250500, PF3D7_1250500, PF3D7_1250500, PF3D7_1250600, PF3D7_1250700, PF3D7_1250700, PF3D7_1250800, PF3D7_1250800, PF3D7_1250900, PF3D7_1251000, PF3D7_1251000, PF3D7_1251000, PF3D7_1251000, PF3D7_1251000, PF3D7_1251000, PF3D7_1251000, PF3D7_1251000, PF3D7_1251100, PF3D7_1251100, PF3D7_1251100, PF3D7_1251200, PF3D7_1251200, PF3D7_1251200, PF3D7_1251300, PF3D7_1251300, PF3D7_1251300, PF3D7_1251300, PF3D7_1251300, PF3D7_1251300, PF3D7_1251300, PF3D7_1251400, PF3D7_1251500, PF3D7_1251600, PF3D7_1251700, PF3D7_1251700, PF3D7_1251700, PF3D7_1251800, PF3D7_1251900, PF3D7_1252000, PF3D7_1252100, PF3D7_1252100, PF3D7_1252100, PF3D7_1252100, PF3D7_1252100, PF3D7_1252100, PF3D7_1252100, PF3D7_1252100, PF3D7_1252200, PF3D7_1252300, PF3D7_1252300, PF3D7_1252400, PF3D7_1252400, PF3D7_1252400, PF3D7_1252400, PF3D7_1252500, PF3D7_1252500, PF3D7_1252600, PF3D7_1252700, PF3D7_1252700, PF3D7_1252800, PF3D7_1252800, PF3D7_1252900, PF3D7_1252900, PF3D7_1253000, PF3D7_1253000, PF3D7_1253100, PF3D7_1253100, PF3D7_1253200, PF3D7_1253200, PF3D7_1253300, PF3D7_1253300, PF3D7_1253300, PF3D7_1253400, PF3D7_1253500, PF3D7_1253500, PF3D7_1253600, PF3D7_1253600, PF3D7_1253700, PF3D7_1253700, PF3D7_1253800, PF3D7_1253800, PF3D7_1253900, PF3D7_1253900, PF3D7_1253900, PF3D7_1254000, PF3D7_1254000, PF3D7_1254100, PF3D7_1254100, PF3D7_1254200, PF3D7_1254200, PF3D7_1254300, PF3D7_1254300, PF3D7_1254400, PF3D7_1254400, PF3D7_1254500, PF3D7_1254500, PF3D7_1254600, PF3D7_1254600, PF3D7_1254700, PF3D7_1254700, PF3D7_1254800, PF3D7_1254800, PF3D7_1254900, PF3D7_1255000, PF3D7_1255000, PF3D7_1255100, PF3D7_1255100, PF3D7_1255200 |
|
| NC_037284 | 2,061,034 | G→T | 100% | 100% | V643L (GTA→TTA) | PF3D7_1250200 → | CSC1‑like protein, putative |
| NC_037284 | 2,093,238 | G→C | 100% | 100% | E272D (GAG→GAC) | PF3D7_1251200 → | coronin |
| NC_037284 | 2,166,677 | C→T | 100% | intergenic (‑3532/‑1504) | PF3D7_1252900 ← / → PF3D7_1253000 | Plasmodium exported protein, unknown function/gametocyte erythrocyte cytosolic protein | |
| NC_037284 | 2,171,071 | C→T | 100% | intergenic (+1312/‑271) | PF3D7_1253000 → / → PF3D7_1253100 | gametocyte erythrocyte cytosolic protein/Plasmodium exported protein (PHISTa), unknown function | |
| NC_037284 | 2,189,738 | Δ2 bp | 100% | intergenic (+125/+744) | PF3D7_1253600 → / ← PF3D7_1253700 | rifin, pseudogene/rifin | |
| NC_037284 | 2,243,501 | 12,500 bp x 9 | 100% | amplification | [PF3D7_1255200] | [PF3D7_1255200] | |