Sat Oct 26 17:32:37 2024

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_002947_CJ-RC.gbk /var/alemutpipe-outputs/good/3_S3_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/3_S3_L004_R2_001.good.fq.gz