mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 100,477 | A→C | 9.0% | intergenic (‑69/+53) | PP_0094 ← / ← PP_0095 | 5'‑nucleotidase/hypothetical protein |
| RA | 117,256 | T→A | 8.0% | intergenic (+36/+58) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 117,271 | A→T | 18.5% | intergenic (+51/+43) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 170,841 | A→C | 18.0% | intergenic (+22/‑548) | PP_0159 → / → PP_16SA | family III CoA‑transferase/16S ribosomal RNA |
| RA | 195,559 | C→A | 27.8% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 5.1% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 42.4% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 15.9% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 16.3% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 19.9% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 19.2% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,795 | G→C | 7.3% | T767T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 22.3% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 8.1% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 14.8% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 5.1% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 5.1% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 13.4% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 19.1% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 20.3% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 11.1% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 8.7% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 235,360 | G→T | 14.6% | intergenic (+57/+68) | PP_0183 → / ← argH | glutathione S‑transferase/argininosuccinate lyase |
| RA | 278,742:1 | +A | 75.6% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 278,750 | T→G | 14.1% | intergenic (‑245/+69) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 278,769 | G→T | 15.7% | intergenic (‑264/+50) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 278,783 | A→T | 17.2% | intergenic (‑278/+36) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 284,586 | T→A | 6.4% | intergenic (+33/+30) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| RA | 284,587 | T→A | 5.3% | intergenic (+34/+29) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | molecular chaperone HslO/hypothetical protein |
| RA | 316,019 | C→G | 14.4% | intergenic (+33/+50) | cysQ → / ← PP_0262 | 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | hypothetical protein |
| JC | 337,791 | Δ62 bp | 5.6% | intergenic (‑41/+27) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| RA | 353,071 | A→C | 15.2% | intergenic (+38/+80) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| RA | 394,385 | C→G | 16.7% | intergenic (+68/‑234) | purU‑I → / → fdhA | formyltetrahydrofolate deformylase/formaldehyde dehydrogenase |
| RA | 403,281 | C→A | 15.3% | intergenic (‑84/+85) | msrA ← / ← PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| RA | 549,164 | C→T | 100% | L672F (CTC→TTC) | fusA → | elongation factor G 1 |
| RA | 668,080 | G→T | 21.3% | intergenic (+44/+108) | yfhM → / ← PP_0571 | lipoprotein/membrane protein |
| RA | 668,090 | C→A | 20.4% | intergenic (+54/+98) | yfhM → / ← PP_0571 | lipoprotein/membrane protein |
| RA | 693,595 | C→G | 9.7% | E149D (GAG→GAC) | PP_0595 ← | LysR family transcriptional regulator |
| RA | 697,100 | T→G | 22.4% | intergenic (+27/‑724) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 697,102 | A→C | 10.6% | intergenic (+29/‑722) | mmsA‑I → / → PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| RA | 699,722 | A→G | 51.2% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 718,464 | A→C | 18.3% | intergenic (+34/+43) | thiO → / ← PP_0613 | FAD‑dependent glycine/D‑amino acid oxidase/amidase family protein |
| RA | 796,868 | T→G | 10.2% | intergenic (+70/‑120) | PP_0681 → / → PP_0682 | hypothetical protein/inner membrane protein |
| RA | 796,874 | A→T | 16.2% | intergenic (+76/‑114) | PP_0681 → / → PP_0682 | hypothetical protein/inner membrane protein |
| RA | 856,629 | C→G | 11.1% | intergenic (+59/+57) | pagL‑I → / ← PP_0738 | lipid A 3‑O‑deacylase/hypothetical protein |
| RA | 874,295 | G→C | 11.6% | intergenic (+32/‑127) | PP_0758 → / → PP_0759 | hypothetical protein/hypothetical protein |
| RA | 874,304 | T→A | 22.8% | intergenic (+41/‑118) | PP_0758 → / → PP_0759 | hypothetical protein/hypothetical protein |
| RA | 874,306 | C→A | 20.0% | intergenic (+43/‑116) | PP_0758 → / → PP_0759 | hypothetical protein/hypothetical protein |
| RA | 874,310 | G→T | 16.5% | intergenic (+47/‑112) | PP_0758 → / → PP_0759 | hypothetical protein/hypothetical protein |
| RA | 874,336 | C→G | 11.3% | intergenic (+73/‑86) | PP_0758 → / → PP_0759 | hypothetical protein/hypothetical protein |
| RA | 955,149 | A→G | 11.8% | intergenic (+103/‑210) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| RA | 955,151 | G→A | 10.2% | intergenic (+105/‑208) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| RA | 955,152 | T→A | 9.3% | intergenic (+106/‑207) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| RA | 955,153 | T→C | 13.9% | intergenic (+107/‑206) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| RA | 955,155 | C→T | 13.4% | intergenic (+109/‑204) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
| RA | 1,007,546 | A→T | 9.2% | intergenic (+46/+44) | PP_0867 → / ← yehX | FecA‑like outer membrane receptor/ABC transporter ATP‑binding protein |
| RA | 1,013,234 | C→A | 8.5% | intergenic (+62/+69) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,013,235 | A→T | 8.9% | intergenic (+63/+68) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,013,241 | G→C | 8.9% | intergenic (+69/+62) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,013,242 | G→C | 11.5% | intergenic (+70/+61) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,013,248 | A→T | 11.4% | intergenic (+76/+55) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,013,249 | T→G | 8.6% | intergenic (+77/+54) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,013,255 | A→T | 12.0% | intergenic (+83/+48) | prfC → / ← potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| RA | 1,037,807 | C→G | 13.7% | intergenic (+52/+64) | PP_0896 → / ← PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase |
| RA | 1,037,815 | C→G | 16.2% | intergenic (+60/+56) | PP_0896 → / ← PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase |
| RA | 1,070,246:1 | +G | 89.1% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,246:2 | +A | 89.1% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,260 | G→C | 9.3% | intergenic (+60/+82) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,263 | G→C | 7.5% | intergenic (+63/+79) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,327,121 | C→T | 51.7% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,370,774 | C→A | 13.4% | R524R (CGG→AGG) ‡ | PP_1195 → | hypothetical protein |
| RA | 1,370,775 | G→T | 17.2% | R524L (CGG→CTG) ‡ | PP_1195 → | hypothetical protein |
| RA | 1,383,250 | G→C | 29.8% | C17W (TGC→TGG) | PP_1204 ← | lipoprotein |
| RA | 1,383,256 | T→G | 18.1% | A15A (GCA→GCC) ‡ | PP_1204 ← | lipoprotein |
| RA | 1,383,258 | C→G | 19.1% | A15P (GCA→CCA) ‡ | PP_1204 ← | lipoprotein |
| RA | 1,403,590 | G→A | 7.5% | intergenic (‑56/+25) | PP_1227 ← / ← PP_1228 | membrane protein/methyl‑accepting chemotaxis transducer |
| RA | 1,403,591 | T→C | 8.5% | intergenic (‑57/+24) | PP_1227 ← / ← PP_1228 | membrane protein/methyl‑accepting chemotaxis transducer |
| RA | 1,419,548:1 | +C | 64.2% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | hypothetical protein/hypothetical protein |
| RA | 1,464,198 | T→G | 16.8% | T474P (ACC→CCC) | algX ← | alginate biosynthesis protein AlgX |
| RA | 1,464,205 | A→C | 17.5% | P471P (CCT→CCG) | algX ← | alginate biosynthesis protein AlgX |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| JC | 1,531,732 | Δ107 bp | 5.7% | coding (38‑144/630 nt) | PP_1344 ← | hypothetical protein |
| RA | 1,598,831 | C→G | 7.4% | intergenic (‑70/+61) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
| RA | 1,598,832 | T→C | 5.5% | intergenic (‑71/+60) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
| RA | 1,598,833 | G→A | 5.1% | intergenic (‑72/+59) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
| RA | 1,598,834 | C→G | 8.3% | intergenic (‑73/+58) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
| RA | 1,598,837 | C→T | 5.2% | intergenic (‑76/+55) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
| RA | 1,598,852 | T→G | 10.7% | intergenic (‑91/+40) | dctB ← / ← bglX | C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase |
| RA | 1,615,698 | A→C | 18.0% | A18A (GCT→GCG) | PP_1415 ← | membrane protein |
| RA | 1,703,248 | A→G | 17.0% | intergenic (+97/‑70) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| RA | 1,703,250 | G→C | 16.1% | intergenic (+99/‑68) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| RA | 1,703,252 | C→T | 16.4% | intergenic (+101/‑66) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| RA | 1,704,635 | C→G | 17.4% | intergenic (+22/‑1) | PP_1498 → / → PP_1499 | lipoprotein/hypothetical protein |
| JC | 1,780,067 | Δ62 bp | 19.2% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| RA | 1,799,864 | A→C | 12.4% | intergenic (+34/‑153) | rnhB → / → dnaEA | ribonuclease HII/DNA polymerase III subunit alpha |
| RA | 1,799,891 | C→G | 13.8% | intergenic (+61/‑126) | rnhB → / → dnaEA | ribonuclease HII/DNA polymerase III subunit alpha |
| RA | 1,799,917 | A→C | 18.1% | intergenic (+87/‑100) | rnhB → / → dnaEA | ribonuclease HII/DNA polymerase III subunit alpha |
| RA | 1,799,925 | T→G | 19.1% | intergenic (+95/‑92) | rnhB → / → dnaEA | ribonuclease HII/DNA polymerase III subunit alpha |
| RA | 1,810,335 | T→G | 7.8% | intergenic (+96/‑73) | eno → / → ftsB | enolase/cell division protein |
| RA | 1,810,336 | C→A | 7.5% | intergenic (+97/‑72) | eno → / → ftsB | enolase/cell division protein |
| RA | 1,842,800 | T→G | 15.5% | Q665P (CAG→CCG) | gacS ← | sensor protein GacS |
| RA | 1,843,992 | G→A | 94.8% | Q268* (CAG→TAG) | gacS ← | sensor protein GacS |
| RA | 1,898,677 | G→T | 18.7% | intergenic (+83/‑88) | PP_t16 → / → PP_t17 | tRNA‑Asp/tRNA‑Val |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor |
| RA | 1,970,770 | T→G | 15.6% | intergenic (+64/‑202) | mtnA → / → PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| RA | 2,017,246 | Δ1 bp | 100% | intergenic (‑854/‑1480) | PP_1795 ← / → PP_1797 | hypothetical protein/HlyD family secretion protein |
| RA | 2,078,264 | G→C | 18.1% | intergenic (+49/+66) | PP_1853 → / ← PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| RA | 2,134,460 | G→T | 92.2% | P764H (CCC→CAC) | fadE ← | medium‑long chain acyl‑CoA dehydrogenase |
| JC | 2,282,749 | Δ66 bp | 9.0% | intergenic (‑141/+23) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,400,543 | T→G | 11.1% | intergenic (‑261/+14) | evgA ← / ← dgt | two‑component system response regulator/deoxyguanosinetriphosphate triphosphohydrolase‑like protein |
| RA | 2,676,184 | C→A | 12.5% | intergenic (‑50/‑188) | PP_2344 ← / → PP_2345 | hypothetical protein/hypothetical protein |
| RA | 2,793,757 | T→G | 5.4% | intergenic (+66/+61) | PP_2445 → / ← PP_2446 | membrane protein/hypothetical protein |
| RA | 2,793,761 | A→C | 8.1% | intergenic (+70/+57) | PP_2445 → / ← PP_2446 | membrane protein/hypothetical protein |
| RA | 2,863,829 | T→G | 21.9% | S297A (TCG→GCG) | gllR → | HTH‑type transcriptional regulator GalR |
| RA | 2,948,039 | C→A | 15.3% | intergenic (+151/+79) | PP_2580 → / ← PP_2581 | hypothetical protein/hypothetical protein |
| RA | 2,951,342 | G→T | 5.9% | intergenic (‑121/+40) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| RA | 2,954,663 | G→C | 8.4% | intergenic (‑166/‑115) | PP_2586 ← / → PP_2587 | putative amino acid transporter/LuxR family transcriptional regulator |
| JC | 2,957,081 | Δ84 bp | 8.3% | intergenic (+36/‑77) | PP_2588 → / → PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein |
| RA | 2,958,523 | C→T | 100% | A428V (GCA→GTA) | PP_2589 → | aldehyde dehydrogenase family protein |
| RA | 2,958,790 | T→C | 7.8% | intergenic (+56/+86) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 2,958,799 | G→C | 10.8% | intergenic (+65/+77) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 2,958,800 | T→C | 5.8% | intergenic (+66/+76) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 2,958,803 | G→C | 5.5% | intergenic (+69/+73) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 2,958,806 | G→A | 5.5% | intergenic (+72/+70) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 2,958,807 | G→C | 5.3% | intergenic (+73/+69) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 2,958,816 | G→A | 6.2% | intergenic (+82/+60) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 3,152,278 | G→C | 14.9% | A145P (GCA→CCA) | PP_2768 → | branched‑chain amino acid ABC transporter permease |
| RA | 3,339,163 | T→A | 16.0% | intergenic (‑165/+78) | PP_2935 ← / ← ybiT | membrane protein/ABC‑F family ATPase |
| RA | 3,447,286 | A→C | 18.8% | S18R (AGC→CGC) | PP_5556 → | bacteriophage lysis protein |
| RA | 3,466,841 | T→G | 23.2% | intergenic (‑16/+108) | PP_3081 ← / ← PP_5560 | hypothetical protein/hypothetical protein |
| RA | 3,578,424 | G→T | 7.9% | intergenic (+101/‑223) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| RA | 3,588,138 | C→G | 13.1% | intergenic (+59/‑16) | catA‑II → / → benE‑II | catechol 1,2‑dioxygenase/benzoate transport protein |
| RA | 3,624,810 | G→C | 7.6% | G226G (GGC→GGG) | PP_3195 ← | hypothetical protein |
| RA | 3,776,393 | G→C | 31.1% | intergenic (+75/‑68) | PP_3338 → / → PP_3339 | cytochrome bd‑type quinol oxidase/hypothetical protein |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 4,049,903 | T→A | 19.2% | intergenic (+36/‑65) | quiA → / → oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
| RA | 4,158,465 | C→G | 10.9% | L159V (CTG→GTG) ‡ | PP_3661 → | membrane protein |
| RA | 4,158,466 | T→G | 23.7% | L159R (CTG→CGG) ‡ | PP_3661 → | membrane protein |
| RA | 4,158,471 | A→C | 24.4% | S161R (AGC→CGC) | PP_3661 → | membrane protein |
| MC JC | 4,274,119 | 32 bp→45 bp | 100% | intergenic (‑243/‑1) | glcC ← / → glcD | transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit |
| RA | 4,340,182 | A→T | 16.2% | intergenic (+60/‑271) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,183 | G→C | 16.7% | intergenic (+61/‑270) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,188 | A→G | 18.8% | intergenic (+66/‑265) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,189 | C→T | 18.1% | intergenic (+67/‑264) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,190 | A→G | 18.4% | intergenic (+68/‑263) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,191 | C→T | 18.8% | intergenic (+69/‑262) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,196 | G→C | 18.4% | intergenic (+74/‑257) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,340,197 | A→T | 15.8% | intergenic (+75/‑256) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| RA | 4,348,812 | A→G | 52.2% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,586,137 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,140:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,163:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,740,912 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,923 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,926 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,946 | C→G | 14.7% | intergenic (+76/+677) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,948 | T→A | 19.5% | intergenic (+78/+675) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,949 | T→A | 9.4% | intergenic (+79/+674) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,951 | C→G | 21.8% | intergenic (+81/+672) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,336 | A→C | 100% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,338 | C→G | 100% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,341 | C→T | 100% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,343 | 2 bp→TG | 100% | intergenic (+473/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,346 | A→G | 100% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,350 | 3 bp→TGC | 100% | intergenic (+480/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,362 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,364 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,367 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,370 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,379 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,381 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,383 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,385 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,390:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,396 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,399 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,401 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,403 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,405 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,767,982 | A→T | 100% | intergenic (+89/‑93) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,767,984 | T→G | 100% | intergenic (+91/‑91) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,768,005 | T→A | 100% | intergenic (+112/‑70) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,798,315 | C→T | 6.2% | intergenic (‑170/+48) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,798,317 | G→C | 8.8% | intergenic (‑172/+46) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,798,320 | G→C | 6.0% | intergenic (‑175/+43) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,798,322 | A→G | 13.2% | intergenic (‑177/+41) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,850,312 | G→C | 13.4% | intergenic (+14/‑92) | PP_4263 → / → hemN | cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase |
| RA | 4,864,251 | G→C | 9.5% | L1109V (CTG→GTG) | smc ← | chromosome partition protein Smc |
| MC JC | 4,875,480 | Δ756 bp | 100% | coding (1‑756/756 nt) | PP_4283 ← | GntR family transcriptional regulator |
| RA | 4,895,261 | A→G | 15.9% | intergenic (+33/‑175) | pyk → / → PP_4302 | pyruvate kinase/urea transporter |
| RA | 4,895,285 | A→C | 11.9% | intergenic (+57/‑151) | pyk → / → PP_4302 | pyruvate kinase/urea transporter |
| RA | 4,911,624 | C→G | 5.7% | intergenic (+314/+165) | PP_4318 → / ← PP_4319 | transposase/hypothetical protein |
| RA | 4,911,625 | C→G | 5.7% | intergenic (+315/+164) | PP_4318 → / ← PP_4319 | transposase/hypothetical protein |
| RA | 4,952,675 | T→G | 15.6% | intergenic (‑122/+35) | fliL ← / ← fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
| JC | 4,982,288 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| RA | 5,114,352 | G→T | 21.6% | intergenic (‑238/+28) | rluB ← / ← PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein |
| RA | 5,121,350 | C→A | 12.0% | intergenic (+80/+51) | PP_4505 → / ← PP_4506 | sensor histidine kinase/nitroreductase family protein |
| RA | 5,164,217 | G→C | 16.5% | intergenic (+37/+164) | PP_4544 → / ← PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| RA | 5,164,220 | G→C | 24.1% | intergenic (+40/+161) | PP_4544 → / ← PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| RA | 5,164,221 | A→C | 15.9% | intergenic (+41/+160) | PP_4544 → / ← PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| RA | 5,174,945 | C→A | 18.6% | intergenic (‑283/+49) | fadD‑I ← / ← fadD‑II | long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase |
| RA | 5,194,455 | T→A | 17.0% | intergenic (+133/‑69) | PP_4572 → / → PP_4573 | hypothetical protein/AAA family ATPase |
| RA | 5,194,457 | C→A | 17.1% | intergenic (+135/‑67) | PP_4572 → / → PP_4573 | hypothetical protein/AAA family ATPase |
| RA | 5,194,467 | A→T | 25.3% | intergenic (+145/‑57) | PP_4572 → / → PP_4573 | hypothetical protein/AAA family ATPase |
| RA | 5,211,996 | T→G | 13.3% | intergenic (‑159/+19) | rnd ← / ← PP_4592 | ribonuclease D/metal dependent hydrolase |
| RA | 5,258,571 | C→G | 28.5% | intergenic (+20/+25) | PP_5703 → / ← PP_4634 | type III effector protein HopJ/alpha/beta family hydrolase |
| RA | 5,282,629 | G→T | 12.2% | intergenic (+59/+79) | trmA → / ← pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
| RA | 5,396,064 | A→G | 100% | V231A (GTA→GCA) | tphBII ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| MC JC | 5,398,594 | Δ23,945 bp | 100% | [hsdM]–[PP_4759] | 18 genes [hsdM], hsdS, PP_5711, PP_4743, PP_4745, PP_4746, PP_4748, PP_4749, PP_4750, PP_4751, PP_4752, stcD, PP_4754, PP_4755, gabP‑V, gudD, PP_4758, [PP_4759] |
|
| RA | 5,449,113 | A→C | 12.5% | Q148P (CAG→CCG) | thiE → | thiamine‑phosphate synthase |
| RA | 5,465,596 | A→C | 9.0% | L190R (CTG→CGG) | PP_4799 ← | muramoyltetrapeptide carboxypeptidase |
| RA | 5,465,670 | T→G | 11.1% | A165A (GCA→GCC) | PP_4799 ← | muramoyltetrapeptide carboxypeptidase |
| RA | 5,512,711 | A→C | 13.3% | Q32P (CAG→CCG) | urtB → | urea ABC transporter permease |
| RA | 5,512,720 | T→G | 11.0% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| RA | 5,528,390 | C→A | 18.7% | A121A (GCC→GCA) | PP_4858 → | hypothetical protein |
| RA | 5,541,398 | C→G | 10.9% | intergenic (+73/+48) | PP_4871 → / ← PP_4872 | lysine decarboxylase family protein/hypothetical protein |
| JC | 5,558,423 | +GCC | 93.6% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 5,560,596 | T→A | 12.4% | intergenic (‑152/+179) | PP_4888 ← / ← purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
| RA | 5,658,451 | C→A | 12.9% | intergenic (‑91/+61) | epd ← / ← tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| RA | 5,677,565:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,677,568 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| JC | 5,684,230 | +CGGG | 74.9% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| RA | 5,707,344 | T→A | 20.8% | intergenic (+54/+58) | PP_5006 → / ← PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 |
| RA | 5,707,366 | A→T | 20.1% | intergenic (+76/+36) | PP_5006 → / ← PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 |
| RA | 5,736,857 | A→C | 16.4% | intergenic (‑68/+89) | proY ← / ← hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
| RA | 5,743,282 | T→G | 16.0% | intergenic (+32/+39) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| RA | 5,743,285 | A→T | 17.3% | intergenic (+35/+36) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| RA | 5,743,286 | A→T | 17.5% | intergenic (+36/+35) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| RA | 5,743,289 | C→A | 15.1% | intergenic (+39/+32) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
| RA | 5,746,166 | A→C | 6.1% | intergenic (‑184/+63) | fbp ← / ← glgP | class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase |
| RA | 5,746,175 | C→T | 6.1% | intergenic (‑193/+54) | fbp ← / ← glgP | class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase |
| RA | 5,746,189 | G→T | 7.2% | intergenic (‑207/+40) | fbp ← / ← glgP | class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase |
| RA | 5,905,979 | G→T | 18.5% | intergenic (‑128/‑140) | PP_5175 ← / → PP_5176 | HlyD family secretion protein/hypothetical protein |
| RA | 5,905,980 | A→C | 32.9% | intergenic (‑129/‑139) | PP_5175 ← / → PP_5176 | HlyD family secretion protein/hypothetical protein |
| RA | 5,923,038 | A→C | 20.6% | Q270P (CAG→CCG) | PP_5190 → | type II secretion system protein |
| RA | 5,930,751 | T→G | 9.9% | intergenic (‑42/+111) | PP_5195 ← / ← fbpA | iron ABC transporter permease/iron ABC transporter substrate‑binding protein |
| RA | 5,930,803 | A→T | 12.1% | intergenic (‑94/+59) | PP_5195 ← / ← fbpA | iron ABC transporter permease/iron ABC transporter substrate‑binding protein |
| RA | 5,991,624 | G→A | 8.2% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,634 | T→C | 10.8% | intergenic (+113/‑433) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,639 | C→T | 9.9% | intergenic (+118/‑428) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,640 | G→T | 9.9% | intergenic (+119/‑427) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,641 | C→T | 9.9% | intergenic (+120/‑426) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,644 | A→G | 9.6% | intergenic (+123/‑423) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,650 | G→C | 11.9% | intergenic (+129/‑417) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,652 | C→G | 11.3% | intergenic (+131/‑415) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,655 | C→T | 11.3% | intergenic (+134/‑412) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,659 | C→G | 10.9% | intergenic (+138/‑408) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,663 | C→T | 12.0% | intergenic (+142/‑404) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,665 | C→T | 11.8% | intergenic (+144/‑402) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,704 | C→A | 11.8% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,709 | C→T | 13.5% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,710 | A→G | 13.5% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,720 | T→C | 14.7% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,726 | Δ1 bp | 14.6% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,000,004:1 | +G | 8.2% | intergenic (‑158/+42) | PP_5252 ← / ← PP_5253 | hypothetical protein/arylesterase |
| RA | 6,000,009 | Δ1 bp | 8.2% | intergenic (‑163/+37) | PP_5252 ← / ← PP_5253 | hypothetical protein/arylesterase |
| RA | 6,016,700 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| RA | 6,022,100 | C→A | 14.7% | intergenic (‑86/+59) | dadX ← / ← dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase |
| RA | 6,022,106 | C→G | 8.4% | intergenic (‑92/+53) | dadX ← / ← dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase |
| RA | 6,030,733 | T→G | 9.6% | intergenic (‑62/+49) | PP_5277 ← / ← kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| RA | 6,030,744 | T→G | 10.3% | intergenic (‑73/+38) | PP_5277 ← / ← kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
| RA | 6,135,340 | T→A | 14.7% | E443V (GAG→GTG) | copA‑II ← | copper resistance protein A |
| RA | 6,135,378 | A→T | 20.3% | H430Q (CAT→CAA) | copA‑II ← | copper resistance protein A |
| RA | 6,135,416 | T→C | 11.2% | T418A (ACC→GCC) | copA‑II ← | copper resistance protein A |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 336232 | 32 (0.200) | 4 (0.030) | 4/220 | NT | 9.1% | intergenic (+80/+313) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947_CJ‑RC | = 336298 | 54 (0.410) | intergenic (+146/+247) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | 413989 = | 130 (0.800) | 7 (0.040) | 5/266 | NT | 6.0% | intergenic (+9/‑194) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947_CJ‑RC | 414085 = | 94 (0.590) | intergenic (+105/‑98) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_002947_CJ‑RC | = 652782 | 136 (0.830) | 5 (0.040) | 4/234 | NT | 7.9% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947_CJ‑RC | = 4809862 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947_CJ‑RC | = 668081 | 40 (0.250) | 4 (0.030) | 4/226 | NT | 9.0% | intergenic (+45/+107) | yfhM/PP_0571 | lipoprotein/membrane protein |
| ? | NC_002947_CJ‑RC | = 668150 | 48 (0.360) | intergenic (+114/+38) | yfhM/PP_0571 | lipoprotein/membrane protein | |||||
| * | ? | NC_002947_CJ‑RC | = 1419549 | 43 (0.260) | 19 (0.120) | 13/268 | NT | 26.6% | intergenic (‑38/+98) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947_CJ‑RC | = 1419636 | 63 (0.400) | intergenic (‑125/+11) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 1499458 | 38 (0.230) | 8 (0.050) | 6/270 | NT | 18.7% | intergenic (+35/‑129) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947_CJ‑RC | = 1499495 | 32 (0.200) | intergenic (+72/‑92) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
| * | ? | NC_002947_CJ‑RC | 1737987 = | 169 (1.040) | 8 (0.060) | 8/240 | NT | 5.4% | coding (32/348 nt) | yffB | glutathione‑dependent thiol reductase |
| ? | NC_002947_CJ‑RC | = 1777401 | 134 (0.940) | intergenic (+135/+157) | PP_5476/PP_1585 | hypothetical protein/antidote protein | |||||
| * | ? | NC_002947_CJ‑RC | 1799835 = | 75 (0.460) | 5 (0.030) | 4/260 | NT | 6.0% | intergenic (+5/‑182) | rnhB/dnaEA | ribonuclease HII/DNA polymerase III subunit alpha |
| ? | NC_002947_CJ‑RC | 1799955 = | 85 (0.550) | intergenic (+125/‑62) | rnhB/dnaEA | ribonuclease HII/DNA polymerase III subunit alpha | |||||
| * | ? | NC_002947_CJ‑RC | = 1799873 | 76 (0.470) | 4 (0.030) | 4/228 | NT | 6.2% | intergenic (+43/‑144) | rnhB/dnaEA | ribonuclease HII/DNA polymerase III subunit alpha |
| ? | NC_002947_CJ‑RC | = 1799915 | 58 (0.430) | intergenic (+85/‑102) | rnhB/dnaEA | ribonuclease HII/DNA polymerase III subunit alpha | |||||
| * | ? | NC_002947_CJ‑RC | 1967145 = | 70 (0.430) | 4 (0.030) | 3/208 | NT | 9.3% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947_CJ‑RC | 1967241 = | 25 (0.200) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947_CJ‑RC | = 1970739 | 62 (0.380) | 3 (0.020) | 3/234 | NT | 5.3% | intergenic (+33/‑233) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| ? | NC_002947_CJ‑RC | = 1970801 | 55 (0.400) | intergenic (+95/‑171) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region | |||||
| * | ? | NC_002947_CJ‑RC | = 2050595 | 31 (0.190) | 3 (0.030) | 3/200 | NT | 9.7% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947_CJ‑RC | = 2050631 | 33 (0.280) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 2099982 | 16 (0.100) | 4 (0.030) | 4/228 | NT | 15.9% | intergenic (‑93/‑112) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947_CJ‑RC | = 2100031 | 29 (0.210) | intergenic (‑142/‑63) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
| * | ? | NC_002947_CJ‑RC | = 2472115 | 51 (0.310) | 7 (0.050) | 7/260 | NT | 8.1% | intergenic (+19/+130) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947_CJ‑RC | 2472313 = | 110 (0.710) | coding (1783/1851 nt) | PP_2167 | PhoD‑like phosphatase | |||||
| * | ? | NC_002947_CJ‑RC | 4159069 = | 48 (0.290) | 4 (0.030) | 4/248 | NT | 7.6% | intergenic (+17/‑192) | PP_3661/PP_3662 | membrane protein/hypothetical protein |
| ? | NC_002947_CJ‑RC | 4159157 = | 54 (0.370) | intergenic (+105/‑104) | PP_3661/PP_3662 | membrane protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 4586136 | 26 (0.160) | 26 (0.170) | 13/252 | NT | 41.0% | intergenic (+112/+103) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947_CJ‑RC | = 4586216 | 51 (0.340) | intergenic (+192/+23) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947_CJ‑RC | 4809877 = | 0 (0.000) | 24 (0.200) | 17/204 | NT | 34.3% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947_CJ‑RC | = 5991750 | 92 (0.760) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | = 4809882 | 0 (0.000) | 23 (0.150) | 21/250 | NT | 30.3% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947_CJ‑RC | 5991580 = | 106 (0.710) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | 4895256 = | 12 (0.070) | 3 (0.020) | 3/220 | NT | 19.6% | intergenic (+28/‑180) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947_CJ‑RC | 4895335 = | 15 (0.110) | intergenic (+107/‑101) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
| * | ? | NC_002947_CJ‑RC | = 4895282 | 18 (0.110) | 3 (0.020) | 3/220 | NT | 16.9% | intergenic (+54/‑154) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947_CJ‑RC | = 4895307 | 15 (0.110) | intergenic (+79/‑129) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
| * | ? | NC_002947_CJ‑RC | = 4898101 | 33 (0.200) | 6 (0.040) | 5/232 | NT | 13.7% | intergenic (+31/‑177) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947_CJ‑RC | = 4898148 | 48 (0.350) | intergenic (+78/‑130) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947_CJ‑RC | 5114262 = | 121 (0.740) | 6 (0.040) | 5/230 | NT | 6.6% | intergenic (‑148/+118) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein |
| ? | NC_002947_CJ‑RC | 5114367 = | 69 (0.500) | intergenic (‑253/+13) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5384135 | 25 (0.150) | 4 (0.030) | 3/204 | NT | 13.7% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947_CJ‑RC | = 5384163 | 32 (0.260) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
| * | ? | NC_002947_CJ‑RC | = 5398598 | 7 (0.040) | 54 (0.330) | 44/272 | NT | 90.0% | coding (9/1218 nt) | hsdM | type I restriction modification system methylase |
| ? | NC_002947_CJ‑RC | 5422544 = | 5 (0.030) | coding (415/702 nt) | PP_4759 | transcriptional regulator, GntR family | |||||
| * | ? | NC_002947_CJ‑RC | = 5399038 | 2 (0.010) | 4 (0.020) | 4/274 | NT | 5.5% | coding (449/1218 nt) | hsdM | type I restriction modification system methylase |
| ? | NC_002947_CJ‑RC | 5441538 = | 136 (0.830) | coding (633/633 nt) | rluE | 23S rRNA pseudouridine(2457) synthase | |||||
| * | ? | NC_002947_CJ‑RC | = 5819667 | 56 (0.340) | 6 (0.040) | 4/256 | NT | 10.1% | intergenic (+38/+91) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947_CJ‑RC | = 5819732 | 54 (0.350) | intergenic (+103/+26) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5906584 | 63 (0.390) | 6 (0.040) | 4/254 | NT | 8.1% | intergenic (+25/+82) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947_CJ‑RC | = 5906646 | 78 (0.520) | intergenic (+87/+20) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | NC_002947_CJ‑RC | 5916972 = | 70 (0.430) | 3 (0.020) | 3/218 | NT | 7.9% | intergenic (+49/+104) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947_CJ‑RC | 5917068 = | 14 (0.110) | intergenic (+145/+8) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947_CJ‑RC | = 5991572 | 113 (0.690) | 11 (0.070) | 10/258 | NT | 9.3% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991794 = | 107 (0.700) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | = 5991586 | 108 (0.660) | 14 (0.090) | 14/258 | NT | 11.3% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991778 = | 118 (0.770) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||