breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 36,145 G→T intergenic (+396/‑19) SA_RS00275 → / → SA_RS00280 DUF3578 domain‑containing protein/hypothetical protein
RA 37,603 C→T pseudogene (581/984 nt) SA_RS00295 ← protein rep
RA 37,636 G→A pseudogene (548/984 nt) SA_RS00295 ← protein rep
RA 41,688 C→T intergenic (‑100/+93) aadD1 ← / ← SA_RS00315 aminoglycoside O‑nucleotidyltransferase ANT(4')‑Ia/IS6‑like element IS257 family transposase
RA 46,963 G→T S26S (TCC→TCA)  mecA ← PBP2a family beta‑lactam‑resistant peptidoglycan transpeptidase MecA
RA 80,872 +G pseudogene (25/559 nt) SA_RS00500 → K(+)‑transporting ATPase subunit C
RA 81,249 Δ1 bp pseudogene (402/559 nt) SA_RS00500 → K(+)‑transporting ATPase subunit C
RA 81,255 Δ1 bp pseudogene (408/559 nt) SA_RS00500 → K(+)‑transporting ATPase subunit C
RA 81,624 +C intergenic (+218/+326) SA_RS00500 → / ← SA_RS00505 K(+)‑transporting ATPase subunit C/hypothetical protein
RA 523,575 G→T intergenic (+3/‑97) rsmA → / → SA_RS02605 16S rRNA (adenine(1518)‑N(6)/adenine(1519)‑N(6))‑ dimethyltransferase RsmA/Veg family protein
RA 1,593,558 G→A T338M (ACG→ATG)  SA_RS07850 ← Nif3‑like dinuclear metal center hexameric protein
RA 1,831,433 A→T Y99F (TAT→TTT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,437 C→T I100I (ATC→ATT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,440 A→G I101M (ATA→ATG)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,444 T→C L103L (TTG→CTT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,446 G→T L103L (TTG→CTT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,449 T→G G104G (GGT→GGG)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,452 C→A A105A (GCC→GCA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,458 T→A V107V (GTT→GTA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,461 T→A A108A (GCT→GCA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,482 C→T G115G (GGC→GGT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,488 G→T A117A (GCG→GCT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,521 T→A V128V (GTT→GTA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,523 2 bp→GG coding (386‑387/1293 nt) arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,528 A→C I131L (ATA→CTA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,533 T→A G132G (GGT→GGA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,538 G→A S134N (AGT→AAT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,540 A→C K135Q (AAG→CAA)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,542 4 bp→AAAA coding (405‑408/1293 nt) arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,547 2 bp→TG coding (410‑411/1293 nt) arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,551 A→T I138I (ATA→ATT)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,557 T→C P140P (CCT→CCC)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 1,831,569 G→C A144A (GCG→GCC)  arsB → arsenite efflux transporter membrane subunit ArsB
RA 2,112,579 G→A intergenic (‑427/+45) SA_RS10720 ← / ← SA_RS10725 23S ribosomal RNA/16S ribosomal RNA
RA 2,561,821 C→T pseudogene (1997/4115 nt) SA_RS14965 ← E domain‑containing protein
RA 2,753,061 T→C M281V (ATG→GTG)  asp1 ← accessory Sec system protein Asp1

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002745 = 2112399NA (NA)191 (0.710) 93/460 0.6 100% intergenic (‑247/+225) SA_RS10720/SA_RS10725 23S ribosomal RNA/16S ribosomal RNA
?NC_002745 2112505 = 0 (0.000)intergenic (‑353/+119) SA_RS10720/SA_RS10725 23S ribosomal RNA/16S ribosomal RNA