breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 27,603 | T→G | 10.2% | F104C (TTT→TGT) | rihC → | ribonucleoside hydrolase 3 |
RA | 68,486 | T→G | 22.0% | L217V (TTG→GTG) | yabI → | DedA family inner membrane protein |
RA | 107,220 | A→T | 14.3% | K819* (AAA→TAA) | secA → | preprotein translocase subunit, ATPase |
RA | 234,984 | G→T | 14.4% | I80I (ATC→ATA) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,985 | A→T | 11.8% | I80N (ATC→AAC) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,990 | G→T | 13.4% | F78L (TTC→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,994 | G→T | 18.8% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,005 | C→A | 15.0% | T73T (ACG→ACT) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,006 | G→T | 11.9% | T73K (ACG→AAG) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,010 | G→T | 17.6% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,019 | C→A | 21.6% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,022 | G→T | 19.7% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,036 | G→T | 17.6% | S63Y (TCC→TAC) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 283,636 | A→C | 9.1% | Q379H (CAA→CAC) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
RA | 295,695 | T→G | 20.5% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 345,384 | G→C | 5.5% | intergenic (+101/‑339) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 353,486 | A→T | 7.3% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 353,489 | C→T | 5.8% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 360,114 | A→T | 5.4% | intergenic (‑48/+547) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
JC | 361,139 | +GCCA | 10.1% | coding (605/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 450,329 | C→G | 15.9% | intergenic (+84/‑260) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 576,183 | G→T | 10.1% | intergenic (‑282/‑107) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
RA | 772,664 | A→C | 14.0% | K289N (AAA→AAC) | tolA → | membrane anchored protein in TolA‑TolQ‑TolR complex |
RA | 816,078 | C→G | 6.2% | intergenic (+34/‑171) | ybhL → / → ybhM | UPF0005 family inner membrane protein/UPF0005 family inner membrane protein |
RA | 816,095 | T→A | 7.5% | intergenic (+51/‑154) | ybhL → / → ybhM | UPF0005 family inner membrane protein/UPF0005 family inner membrane protein |
RA | 847,954 | A→C | 5.2% | L34V (TTA→GTA) | ybiP ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 910,654 | C→G | 7.3% | intergenic (‑341/+154) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
JC JC | 919,057 | IS5 (–) +4 bp | 45.4% | coding (338‑341/2277 nt) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
RA | 1,092,897 | C→T | 8.5% | intergenic (+612/+124) | ycdU → / ← serX | putative inner membrane protein/tRNA‑Ser |
RA | 1,118,469 | G→C | 5.8% | F87L (TTC→TTG) | yceB ← | lipoprotein, DUF1439 family |
RA | 1,282,337 | A→T | 7.1% | intergenic (+355/+185) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,282,421 | A→T | 13.9% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,282,439 | A→T | 9.9% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,282,605 | G→A | 6.2% | noncoding (88/171 nt) R10* (CGA→TGA) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
RA | 1,282,608 | T→C | 5.7% | noncoding (85/171 nt) T9A (ACT→GCT) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
JC JC | 1,376,043 | IS5 (–) +4 bp | 39.5% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
JC JC | 1,427,903 | IS3 (–) +3 bp | 13.8% | coding (27‑29/591 nt) | pinR ← | Rac prophage; putative site‑specific recombinase |
RA | 1,429,253 | G→T | 8.5% | pseudogene (13/51 nt) | ttcC ← | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,454,118 | A→T | 5.8% | I270F (ATT→TTT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,460,593 | C→G | 7.2% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,602 | T→C | 6.7% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,752 | C→T | 9.8% | pseudogene (1104/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,761 | A→G | 10.8% | pseudogene (1113/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,819 | G→A | 5.1% | pseudogene (1171/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,460,861 | G→A | 5.2% | pseudogene (1213/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,516,408 | T→G | 6.2% | E305D (GAA→GAC) | yncD ← | putative iron outer membrane transporter |
RA | 1,628,207 | G→A | 41.7% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,670,108 | A→C | 6.7% | V170V (GTT→GTG) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
RA | 1,673,368 | G→T | 6.4% | E229* (GAA→TAA) | ydgH → | DUF1471 family periplasmic protein |
RA | 1,673,380 | T→A | 7.3% | S233T (TCA→ACA) ‡ | ydgH → | DUF1471 family periplasmic protein |
RA | 1,673,381 | C→A | 8.0% | S233* (TCA→TAA) ‡ | ydgH → | DUF1471 family periplasmic protein |
RA | 1,701,282 | A→C | 5.7% | Q36P (CAG→CCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,701,291 | T→G | 8.6% | L39R (CTG→CGG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,702,966 | T→A | 7.2% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,101 | C→G | 8.4% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,795,380 | A→T | 52.8% | V483E (GTA→GAA) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,796,428 | C→A | 14.1% | V134F (GTC→TTC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,823,835 | A→C | 7.5% | W53G (TGG→GGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
RA | 1,859,012 | C→G | 10.7% | intergenic (+21/+27) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
RA | 1,863,933 | A→C | 6.3% | K241T (AAG→ACG) | yeaH → | UPF0229 family protein |
RA | 2,068,168 | T→G | 6.4% | intergenic (+29/‑92) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
RA | 2,170,708 | G→T | 7.3% | intergenic (‑25/+283) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,713 | C→A | 21.1% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,724 | G→T | 24.7% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,757 | T→A | 9.9% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,758 | C→A | 9.1% | intergenic (‑75/+233) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,178,915 | C→G | 9.7% | intergenic (‑135/+88) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
RA | 2,222,655 | C→G | 7.4% | intergenic (+111/+262) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
RA | 2,298,128 | C→T | 11.8% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,159 | T→C | 8.2% | intergenic (+287/+428) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,492 | A→G | 6.1% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,303,607 | A→C | 5.6% | L93R (CTG→CGG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,463,906 | C→A | 12.6% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,910 | G→T | 15.0% | R434I (AGA→ATA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,914 | T→A | 10.4% | N435K (AAT→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,915 | C→A | 11.4% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,598,079 | C→A | 11.7% | L292I (CTC→ATC) | hyfC → | hydrogenase 4, membrane subunit |
RA | 2,711,673 | A→C | 9.2% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
JC | 2,713,645 | +CCTGCGC | 64.9% | coding (334/2661 nt) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,785,712 | C→A | 8.7% | H361N (CAC→AAC) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
RA | 2,811,408 | T→A | 5.9% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
RA | 2,835,291 | T→G | 8.9% | C315G (TGC→GGC) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,940,829 | A→T | 9.1% | intergenic (+7/‑27) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
RA | 3,039,409 | T→G | 14.5% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,263,502 | C→T | 5.1% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,275,236 | G→T | 5.6% | intergenic (+252/‑99) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
RA | 3,385,479 | C→G | 8.0% | intergenic (‑92/+338) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,385,696 | T→A | 5.4% | intergenic (‑309/+121) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,439,422 | G→T | 7.9% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
RA | 3,439,443 | G→T | 6.9% | I19I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
RA | 3,469,871 | T→A | 6.8% | intergenic (‑72/+95) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
RA | 3,498,214 | T→G | 10.1% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,498,239 | A→C | 7.3% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,525,215 | A→C | 11.8% | L195R (CTG→CGG) | yhgE ← | DUF4153 family putative inner membrane protein |
RA | 3,546,282 | A→T | 9.7% | intergenic (‑450/‑162) | malP ← / → malT | maltodextrin phosphorylase/mal regulon transcriptional activator |
RA | 3,546,300 | G→T | 16.6% | intergenic (‑468/‑144) | malP ← / → malT | maltodextrin phosphorylase/mal regulon transcriptional activator |
RA | 3,633,969 | T→G | 9.1% | intergenic (+64/‑253) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
RA | 3,721,485 | T→G | 11.9% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
RA | 3,779,281 | C→G | 6.8% | A221G (GCT→GGT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,779,316 | G→T | 7.6% | D233Y (GAT→TAT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,779,319 | G→T | 7.9% | E234* (GAA→TAA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,786,687 | C→A | 8.8% | L119F (TTG→TTT) | yibB ← | YibB family protein, function unknown |
RA | 3,803,561 | T→G | 7.2% | F126C (TTT→TGT) | coaD → | pantetheine‑phosphate adenylyltransferase |
RA | 3,816,601 | A→T | 40.1% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,822,340 | A→C | 13.3% | Q12H (CAA→CAC) | xanP → | xanthine permease |
RA | 3,870,977 | T→A | 6.4% | intergenic (‑152/+88) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
RA | 3,872,511 | A→C | 5.6% | V323V (GTT→GTG) | gyrB ← | DNA gyrase, subunit B |
RA | 3,926,578 | T→G | 10.8% | intergenic (+34/‑133) | kup → / → rbsD | potassium transporter/putative cytoplasmic sugar‑binding protein |
RA | 3,952,817 | T→G | 10.3% | intergenic (+12/+75) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,952,842 | A→C | 5.7% | intergenic (+37/+50) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,952,861 | T→A | 7.8% | intergenic (+56/+31) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,960,036 | G→A | 26.7% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 4,080,325 | G→T | 10.5% | intergenic (+116/‑37) | fdhD → / → yiiG | formate dehydrogenase formation protein/DUF3829 family lipoprotein |
RA | 4,080,364 | G→T | 10.2% | M1M (ATG→ATT) † | yiiG → | DUF3829 family lipoprotein |
RA | 4,143,375 | A→G | 5.7% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,286,214 | T→C | 5.1% | intergenic (+492/+39) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,297,846 | C→A | 20.7% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,315,765 | A→G | 5.1% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
RA | 4,382,288 | A→C | 7.2% | intergenic (+36/‑1) | glyV → / → glyX | tRNA‑Gly/tRNA‑Gly |
RA | 4,575,840 | A→C | 5.6% | pseudogene (793/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
RA | 4,604,195 | A→G | 6.4% | intergenic (+118/+302) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373825 | 375115 | 1291 | 202 [192] | [189] 195 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 4100602 | 4101513 | 912 | 193 [192] | [191] 195 | [cdh]–tpiA | [cdh],tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 187 (0.640) | 143 (0.490) | 86/276 | NT | 43.3% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 10019 (36.510) +TTAATTAA |
197/260 | NT | 97.6% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 260 (0.890) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 326 (1.120) | 9244 (47.760) +46 bp |
182/184 | NT | 97.9% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 259 (0.890) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 78 (0.270) | 52/276 | NT | 27.6% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 205 (0.700) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 62 (0.210) | 37/276 | NT | 23.3% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 204 (0.700) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 1203246 = | 42 (0.140) | 206 (0.800) | 100/244 | NT | 82.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 50 (0.190) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | 1203252 = | 46 (0.160) | 3 (0.010) +C |
3/274 | NT | 5.9% | coding (296/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205070 = | 51 (0.180) | pseudogene (6/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1203261 | 45 (0.150) | 220 (0.850) | 115/244 | NT | 83.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | = 1205058 | 50 (0.190) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1282540 | 97 (0.330) | 11 (0.040) | 7/236 | NT | 7.6% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
? | CP009273 | 1283013 = | 184 (0.740) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
* | ? | CP009273 | = 2007609 | 207 (0.710) | 21 (0.080) | 12/264 | NT | 8.9% | coding (900/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein |
? | CP009273 | 2021385 = | 233 (0.840) | coding (114/1695 nt) | yedQ | putative membrane‑anchored diguanylate cyclase |