breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 3,036 | A→T | 7.2% | Q79L (CAA→CTA) | thrB → | homoserine kinase |
RA | 5,144 | G→A | 100% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 7,522 | G→T | 100% | F146L (TTC→TTA) | yaaJ ← | putative transporter |
RA | 10,444 | G→T | 100% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 13,962 | A→C | 19.4% | E600D (GAA→GAC) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 25,546 | G→T | 100% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
RA | 27,307 | C→T | 100% | I5I (ATC→ATT) | rihC → | ribonucleoside hydrolase 3 |
RA | 29,139 | G→T | 100% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 31,710 | C→A | 100% | I298I (ATC→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,659 | C→A | 100% | R615S (CGC→AGC) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,802 | C→A | 100% | I662I (ATC→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 40,957 | C→A | 100% | V325V (GTG→GTT) | caiT ← | putative transporter |
RA | 42,150 | G→A | 100% | intergenic (‑219/‑253) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 42,342 | G→T | 12.9% | intergenic (‑411/‑61) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 49,840 | G→T | 100% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
RA | 53,249 | G→A | 7.4% | L56L (CTC→CTT) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
RA | 54,392 | G→T | 100% | A104E (GCG→GAG) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
RA | 55,590 | G→T | 100% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 56,677 | G→T | 100% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 58,723 | G→T | 37.7% | pseudogene (250/579 nt) | yabP → | pseudogene, pentapeptide repeats‑containing |
RA | 61,967 | A→C | 19.3% | L433R (CTG→CGG) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
RA | 73,216 | G→T | 6.2% | H191N (CAC→AAC) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
RA | 76,821 | G→T | 100% | G177G (GGC→GGA) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 78,007 | C→A | 18.6% | G147C (GGT→TGT) | leuB ← | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent |
RA | 80,123 | C→T | 100% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
RA | 81,562 | C→A | 100% | I236I (ATC→ATA) | leuO → | global transcription factor |
RA | 82,037 | C→T | 100% | intergenic (+238/‑80) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
RA | 90,618 | C→A | 6.1% | L322L (CTC→CTA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
RA | 93,391 | G→T | 100% | T301T (ACG→ACT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 94,963 | C→A | 24.4% | A25E (GCG→GAG) | ftsW → | lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division |
RA | 96,977 | C→A | 11.7% | H283N (CAT→AAT) | murG → | N‑acetylglucosaminyl transferase |
RA | 97,521 | C→A | 100% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 102,736 | C→A | 100% | I315I (ATC→ATA) | ftsZ → | GTP‑binding tubulin‑like cell division protein |
RA | 102,769 | G→T | 100% | V326V (GTG→GTT) | ftsZ → | GTP‑binding tubulin‑like cell division protein |
RA | 103,467 | G→T | 100% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 104,561 | G→T | 100% | A124S (GCG→TCG) | secM → | regulator of secA translation |
RA | 108,039 | C→A | 100% | intergenic (+119/+97) | mutT → / ← yacG | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP/DNA gyrase inhibitor |
RA | 108,648 | Δ1 bp | 100% | coding (439/744 nt) | zapD ← | FtsZ stabilizer |
RA | 118,548 | G→A | 6.2% | intergenic (‑510/‑31) | aroP ← / → pdhR | aromatic amino acid transporter/pyruvate dehydrogenase complex repressor; autorepressor |
RA | 118,873 | G→T | 100% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 119,536 | G→T | 100% | P11P (CCG→CCT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
RA | 134,028 | G→T | 100% | A153A (GCG→GCT) | cueO → | multicopper oxidase (laccase) |
RA | 135,689 | A→T | 48.0% | L675Q (CTG→CAG) | gcd ← | glucose dehydrogenase |
RA | 137,071 | G→T | 100% | I214I (ATC→ATA) | gcd ← | glucose dehydrogenase |
RA | 137,915 | G→T | 100% | intergenic (‑203/‑3) | gcd ← / → hpt | glucose dehydrogenase/hypoxanthine phosphoribosyltransferase |
RA | 142,460 | T→A | 100% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 150,571 | C→A | 17.7% | W448L (TGG→TTG) | htrE ← | putative outer membrane usher protein |
RA | 153,472 | G→T | 100% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 158,287 | C→A | 100% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 159,666 | G→T | 100% | G359C (GGT→TGT) | hrpB → | putative ATP‑dependent helicase |
RA | 161,068 | A→C | 24.2% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
RA | 161,307 | G→T | 6.1% | D31Y (GAC→TAC) | mrcB → | fused glycosyl transferase and transpeptidase |
RA | 166,662 | C→A | 100% | S133* (TCG→TAG) | fhuC → | iron‑hydroxamate transporter subunit |
RA | 171,580 | T→G | 5.4% | intergenic (‑211/‑14) | hemL ← / → clcA | glutamate‑1‑semialdehyde aminotransferase (aminomutase)/H(+)/Cl(‑) exchange transporter |
RA | 173,725 | G→T | 100% | G129G (GGC→GGA) | yadS ← | UPF0126 family inner membrane protein |
RA | 176,783 | G→T | 100% | D354Y (GAT→TAT) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 185,393 | A→T | 100% | F201I (TTC→ATC) | map ← | methionine aminopeptidase |
RA | 186,159 | A→G | 100% | intergenic (‑166/‑40) | map ← / → tff | methionine aminopeptidase/novel sRNA, function unknown |
RA | 196,832 | C→A | 100% | I806I (ATC→ATA) | bamA → | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
RA | 199,229 | G→T | 100% | E61D (GAG→GAT) | lpxA → | UDP‑N‑acetylglucosamine acetyltransferase |
RA | 201,962 | A→T | 100% | D117V (GAT→GTT) | dnaE → | DNA polymerase III alpha subunit |
RA | 208,013 | G→T | 100% | M616I (ATG→ATT) | ldcC → | lysine decarboxylase 2, constitutive |
RA | 214,084 | G→T | 100% | G393G (GGC→GGA) | proS ← | prolyl‑tRNA synthetase |
RA | 217,887 | C→T | 100% | W74* (TGG→TGA) | metI ← | DL‑methionine transporter subunit |
RA | 217,932 | A→C | 100% | I59M (ATT→ATG) | metI ← | DL‑methionine transporter subunit |
RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
RA | 231,378 | C→A | 100% | R26S (CGC→AGC) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
RA | 232,860 | G→T | 100% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 233,829 | C→A | 19.9% | S3* (TCA→TAA) | yafT → | lipoprotein |
RA | 234,984 | G→T | 12.7% | I80I (ATC→ATA) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,985 | A→T | 12.1% | I80N (ATC→AAC) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,990 | G→T | 10.3% | F78L (TTC→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,994 | G→T | 20.5% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,005 | C→A | 14.4% | T73T (ACG→ACT) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,006 | G→T | 10.0% | T73K (ACG→AAG) ‡ | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,010 | G→T | 15.1% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,019 | C→A | 24.9% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,022 | G→T | 18.7% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 236,234 | A→T | 100% | V148E (GTG→GAG) | yafV ← | putative NAD(P)‑binding C‑N hydrolase family amidase |
RA | 237,417 | A→C | 49.7% | F792V (TTT→GTT) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 238,195 | G→T | 100% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 239,583 | C→A | 20.0% | A70S (GCG→TCG) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 245,306 | C→A | 46.0% | pseudogene (1252/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
RA | 248,447 | C→T | 100% | intergenic (+7/‑45) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 248,486 | C→A | 100% | intergenic (+46/‑6) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 250,909 | A→T | 100% | L432Q (CTG→CAG) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 253,855 | G→T | 100% | R281L (CGT→CTT) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
RA | 255,487 | A→T | 100% | S109T (TCT→ACT) | phoE ← | outer membrane phosphoporin protein E |
RA | 257,564 | G→T | 22.0% | V117V (GTG→GTT) | proA → | gamma‑glutamylphosphate reductase |
RA | 258,688 | C→A | 15.9% | intergenic (+31/+173) | thrW → / ← ykfN | tRNA‑Thr/pseudogene, YdiA family |
RA | 259,494 | G→T | 100% | C75* (TGC→TGA) | yafW ← | CP4‑6 prophage; antitoxin of the YkfI‑YafW toxin‑antitoxin system |
RA | 262,114 | C→A | 100% | D51Y (GAT→TAT) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
RA | 263,564 | G→T | 15.3% | I51I (ATC→ATA) | yafZ ← | CP4‑6 prophage; conserved protein |
RA | 271,650 | G→T | 10.9% | P205P (CCG→CCT) | mmuP → | CP4‑6 prophage; putative S‑methylmethionine transporter |
RA | 274,735 | A→T | 100% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
RA | 279,098 | G→T | 27.9% | E63* (GAG→TAG) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 279,334 | C→A | 100% | I141I (ATC→ATA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 279,800 | G→T | 100% | E297* (GAA→TAA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 282,483 | C→A | 7.6% | H460N (CAT→AAT) | yagG → | CP4‑6 prophage; putative sugar transporter |
RA | 288,249 | T→A | 100% | T137T (ACA→ACT) | yagK ← | CP4‑6 prophage; conserved protein |
RA | 290,012 | C→T | 100% | D167N (GAT→AAT) | yagM ← | CP4‑6 prophage; uncharacterized protein |
RA | 291,348 | G→A | 100% | intergenic (‑58/+59) | yagN ← / ← intF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; putative phage integrase |
RA | 294,929 | C→A | 100% | E573* (GAA→TAA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 295,695 | T→G | 14.0% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 300,770 | C→A | 100% | V49V (GTG→GTT) | ecpE ← | ECP production pilus chaperone |
RA | 302,428 | G→T | 100% | P34Q (CCG→CAG) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 307,479 | G→A | 100% | intergenic (‑432/‑344) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
RA | 309,042 | C→T | 5.5% | intergenic (‑89/+385) | ykgR ← / ← ykgP | uncharacterized protein/pseudogene, oxidoreductase family |
RA | 309,680 | C→T | 18.5% | intergenic (‑164/‑388) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
RA | 310,198 | C→A | 23.5% | pseudogene (131/872 nt) | eaeH → | pseudogene, attaching and effacing protein homology;factor; Not classified |
RA | 312,532 | G→A | 100% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 314,566 | C→A | 100% | D383Y (GAT→TAT) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
RA | 317,203 | G→A | 100% | intergenic (+411/‑116) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 317,205 | G→A | 100% | intergenic (+413/‑114) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 317,206 | G→A | 13.8% | intergenic (+414/‑113) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 319,024 | C→A | 100% | R326S (CGC→AGC) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
RA | 319,381 | G→T | 100% | D445Y (GAC→TAC) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
RA | 320,920 | G→A | 100% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 321,223 | C→A | 100% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
RA | 327,051 | A→T | 18.0% | E626D (GAA→GAT) | betT → | choline transporter of high affinity |
RA | 329,372 | A→T | 100% | L258Q (CTG→CAG) | yahB ← | putative DNA‑bindng transcriptional regulator |
RA | 332,599 | G→T | 100% | A37A (GCG→GCT) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
RA | 335,247 | C→A | 100% | N404K (AAC→AAA) | yahG → | DUF1116 family protein |
RA | 337,720 | G→T | 100% | E295D (GAG→GAT) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
RA | 344,800 | G→T | 100% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
RA | 350,559 | G→T | 19.0% | intergenic (+256/‑74) | prpE → / → codB | propionate‑‑CoA ligase/cytosine transporter |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
JC | 361,139 | +GCCA | 12.4% | coding (605/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
JC | 361,149 | +CAGACG | 7.1% | coding (595/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,673 | A→T | 8.5% | V24E (GTG→GAG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,692 | G→T | 38.2% | Q18K (CAG→AAG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 100% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 362,629 | A→T | 100% | Y9N (TAC→AAC) | mhpR ← | mhp operon transcriptional activator |
RA | 364,561 | G→T | 100% | D18Y (GAC→TAC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
RA | 372,091 | C→A | 100% | R393R (CGG→AGG) | mhpT → | 3‑hydroxyphenylpropionic transporter |
RA | 372,581 | G→T | 100% | A118A (GCG→GCT) | yaiL → | DUF2058 family protein |
RA | 378,179 | A→T | 100% | pseudogene (150/282 nt) | yaiX ← | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
RA | 381,994 | A→T | 13.9% | Q111L (CAG→CTG) | tauB → | taurine transporter subunit |
RA | 385,815 | G→T | 100% | pseudogene (109/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 388,792 | C→A | 15.2% | pseudogene (367/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 390,551 | T→G | 100% | L197R (CTG→CGG) | yaiV → | putative transcriptional regulator |
RA | 396,883 | A→G | 100% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
RA | 397,959 | G→A | 100% | A253T (GCG→ACG) | phoA → | bacterial alkaline phosphatase |
RA | 400,594 | G→T | 100% | V169V (GTC→GTA) | proC ← | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
RA | 402,340 | G→T | 100% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 404,712 | A→T | 21.3% | F255Y (TTC→TAC) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
RA | 406,075 | C→A | 100% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 411,027 | G→T | 100% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 415,049 | G→T | 20.7% | M1M (ATG→ATT) † | brnQ → | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val |
RA | 421,799 | C→A | 100% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
RA | 425,143 | G→T | 94.2% | T61T (ACG→ACT) | secF → | SecYEG protein translocase auxillary subunit |
RA | 426,157 | G→T | 100% | E33* (GAG→TAG) | yajD → | HNH nuclease family protein |
RA | 430,523 | G→A | 13.9% | A141T (GCA→ACA) | ribE → | riboflavin synthase beta chain |
RA | 432,762 | G→T | 100% | P277Q (CCG→CAG) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 433,551 | G→T | 100% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 434,663 | A→C | 100% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 100% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,862 | A→T | 100% | T232T (ACT→ACA) | ispA ← | geranyltranstransferase |
RA | 437,672 | T→A | 100% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 444,489 | G→A | 100% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
RA | 446,369 | T→G | 100% | Q233P (CAG→CCG) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
RA | 450,290 | G→A | 100% | intergenic (+45/‑299) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 450,766 | G→T | 100% | A60S (GCG→TCG) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 456,298 | T→A | 100% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 456,588 | G→T | 100% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 461,499 | G→T | 100% | R424S (CGC→AGC) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
RA | 463,179 | C→A | 100% | I104I (ATC→ATA) | cof → | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase |
RA | 469,232 | G→T | 17.1% | E271* (GAA→TAA) | amtB → | ammonium transporter |
RA | 469,775 | C→A | 19.6% | V281V (GTG→GTT) | tesB ← | acyl‑CoA thioesterase 2 |
RA | 470,984 | C→A | 5.0% | V50V (GTC→GTA) | ybaY → | outer membrane lipoprotein |
RA | 474,138 | G→T | 100% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 475,805 | C→A | 100% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
RA | 477,267 | G→T | 100% | Q865K (CAG→AAG) | acrB ← | multidrug efflux system protein |
RA | 479,244 | C→A | 100% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 100% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 481,667 | G→A | 100% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
RA | 482,757 | G→T | 100% | A256S (GCG→TCG) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
RA | 486,494 | C→A | 100% | R53S (CGC→AGC) | ybaN → | DUF454 family inner membrane protein |
RA | 490,268 | A→T | 22.0% | K136N (AAA→AAT) | recR → | gap repair protein |
RA | 495,020 | T→A | 100% | E137V (GAA→GTA) | aes ← | acetyl esterase |
RA | 503,944 | G→T | 100% | E91* (GAA→TAA) | ybaQ → | putative DNA‑binding transcriptional regulator |
RA | 509,737 | G→A | 100% | E97K (GAG→AAG) | cueR → | copper‑responsive regulon transcriptional regulator |
RA | 517,392 | G→T | 100% | A507A (GCG→GCT) | ybbP → | putative ABC transporter permease |
RA | 517,551 | G→T | 12.4% | P560P (CCG→CCT) | ybbP → | putative ABC transporter permease |
RA | 518,820 | C→A | 100% | A35E (GCG→GAG) | rhsD → | Rhs family putative polymorphic toxin |
RA | 523,388 | T→A | 11.5% | F118I (TTC→ATC) | ybbC → | putative immunity protein |
RA | 524,334:1 | +T | 100% | pseudogene (239/491 nt) | ybbD → | pseudogene |
RA | 524,496 | T→G | 100% | pseudogene (401/491 nt) | ybbD → | pseudogene |
RA | 530,466 | C→A | 100% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 542,200 | Δ1 bp | 100% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 546,491 | G→T | 100% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 100% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 551,499 | G→T | 100% | R171S (CGC→AGC) | ybcI ← | DUF457 family inner membrane protein |
RA | 551,602 | A→T | 37.0% | F136L (TTT→TTA) | ybcI ← | DUF457 family inner membrane protein |
RA | 554,868 | G→T | 5.9% | E147* (GAA→TAA) | sfmC → | putative periplasmic pilus chaperone |
RA | 555,927 | G→T | 18.5% | D259Y (GAT→TAT) | sfmD → | putative outer membrane export usher protein |
RA | 557,592 | G→T | 100% | D814Y (GAC→TAC) | sfmD → | putative outer membrane export usher protein |
RA | 576,998 | G→T | 100% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
RA | 580,366 | G→T | 100% | R242S (CGC→AGC) | ompT ← | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) |
RA | 581,203 | A→T | 100% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 583,341 | T→G | 100% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 591,864 | C→A | 100% | A270E (GCG→GAG) | cusC → | copper/silver efflux system, outer membrane component |
RA | 601,847 | A→T | 100% | I331I (ATT→ATA) | ybdK ← | weak gamma‑glutamyl:cysteine ligase |
RA | 606,076 | C→A | 5.4% | P625P (CCG→CCT) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 607,931 | G→A | 100% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 608,575 | T→A | 25.7% | L128Q (CTG→CAG) | fes → | enterobactin/ferric enterobactin esterase |
RA | 614,726 | G→T | 100% | A339A (GCG→GCT) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
RA | 618,241 | G→T | 8.6% | S162S (TCG→TCT) | entS → | enterobactin exporter, iron‑regulated |
RA | 619,048 | C→A | 100% | A307S (GCC→TCC) | fepB ← | iron‑enterobactin transporter subunit |
RA | 624,669 | G→T | 100% | T221T (ACG→ACT) | entA → | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
RA | 625,174 | G→T | 100% | intergenic (+5/‑176) | entH → / → cstA | enterobactin synthesis proofreading thioesterase/carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 625,364 | G→T | 100% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 627,428 | C→A | 100% | I693I (ATC→ATA) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 628,980 | T→A | 9.3% | intergenic (‑47/‑62) | ybdH ← / → ybdL | putative oxidoreductase/methionine aminotransferase, PLP‑dependent |
RA | 634,078 | T→A | 22.7% | intergenic (‑49/‑323) | dsbG ← / → ahpC | thiol:disulfide interchange protein, periplasmic/alkyl hydroperoxide reductase, C22 subunit |
RA | 639,231 | G→A | 100% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 647,234 | C→T | 100% | E27K (GAA→AAA) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
RA | 647,422 | G→T | 100% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 647,509 | T→C | 100% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 100% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 652,574 | G→T | 14.5% | intergenic (+1/‑174) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 652,597 | C→T | 100% | intergenic (+24/‑151) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 652,865 | Δ1 bp | 100% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 658,096 | C→A | 47.2% | M1M (ATG→ATT) † | ybeD ← | UPF0250 family protein |
RA | 659,689 | G→T | 100% | R320S (CGC→AGC) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
RA | 662,108 | A→T | 100% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 662,631 | C→A | 100% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 667,348 | G→T | 100% | Q99K (CAG→AAG) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
RA | 667,899 | C→A | 100% | D781Y (GAT→TAT) | leuS ← | leucyl‑tRNA synthetase |
RA | 672,142 | T→A | 100% | intergenic (‑139/‑25) | ybeQ ← / → ybeR | Sel1 family TPR‑like repeat protein/uncharacterized protein |
RA | 680,846 | G→T | 100% | F180L (TTC→TTA) | gltK ← | glutamate, aspartate ABC transporter permease subunit |
RA | 688,894 | T→G | 16.8% | intergenic (‑60/+93) | ybeZ ← / ← miaB | PhoH‑like heat shock protein/tRNA‑i(6)A37 methylthiotransferase |
RA | 693,739 | G→T | 100% | H299N (CAC→AAC) | asnB ← | asparagine synthetase B |
RA | 705,007 | G→A | 5.9% | E406E (GAG→GAA) | chiP → | chitoporin, uptake of chitosugars |
RA | 705,588 | C→A | 100% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 706,097 | A→C | 100% | T2T (ACT→ACG) *29G (TGA→GGA) |
fur ← uof ← |
ferric iron uptake regulon transcriptional repressor; autorepressor ryhB‑regulated fur leader peptide |
RA | 710,187 | A→T | 100% | S392C (AGT→TGT) | pgm → | phosphoglucomutase |
RA | 713,251 | G→T | 5.2% | V157V (GTC→GTA) | potE ← | putrescine/proton symporter: putrescine/ornithine antiporter |
RA | 715,924 | C→T | 14.2% | intergenic (‑8/‑115) | speF ← / → ybfK | ornithine decarboxylase isozyme, inducible/uncharacterized protein |
RA | 723,859 | G→T | 100% | V110V (GTC→GTA) | kdpA ← | potassium translocating ATPase, subunit A |
RA | 724,813 | A→T | 100% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
RA | 726,087 | G→T | 100% | R350L (CGT→CTT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,456 | G→A | 100% | R75R (AGG→AGA) | ybfB → | putative membrane protein |
RA | 730,891 | G→T | 100% | pseudogene (1303/1521 nt) | rhsO → | pseudogene, Rhs family protein |
RA | 732,494 | G→T | 100% | pseudogene (214/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 732,655 | G→T | 94.3% | pseudogene (375/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 737,635 | G→T | 100% | G126G (GGC→GGA) | dtpD ← | dipeptide and tripeptide permease D |
RA | 739,056 | G→T | 5.9% | R3L (CGA→CTA) | ybgJ → | putative allophanate hydrolase, subunit 1 |
RA | 743,797 | G→T | 100% | R214R (CGC→CGA) | ybgO ← | putative fimbrial protein |
RA | 745,218 | A→T | 5.0% | L803Q (CTG→CAG) | ybgQ ← | putative outer membrane protein |
RA | 747,068 | A→T | 37.3% | I186I (ATT→ATA) | ybgQ ← | putative outer membrane protein |
RA | 747,973 | C→A | 100% | P93P (CCG→CCT) | ybgD ← | putative fimbrial‑like adhesin protein |
RA | 748,707 | A→T | 100% | I406I (ATT→ATA) | gltA ← | citrate synthase |
RA | 753,549 | G→T | 100% | Q135H (CAG→CAT) | sdhB → | succinate dehydrogenase, FeS subunit |
RA | 754,572 | G→T | 100% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 759,000 | C→A | 100% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 767,399 | A→T | 100% | E162D (GAA→GAT) | cydA → | cytochrome d terminal oxidase, subunit I |
RA | 784,094 | G→T | 100% | A67E (GCG→GAG) | galM ← | aldose 1‑epimerase; type‑1 mutarotase |
RA | 788,902 | G→T | 100% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 789,044 | G→T | 5.6% | I67I (ATC→ATA) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 800,488 | G→T | 100% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
RA | 800,779 | G→T | 100% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 805,678 | G→T | 40.7% | T293T (ACG→ACT) | bioB → | biotin synthase |
RA | 809,212 | G→T | 100% | M77I (ATG→ATT) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
RA | 816,302 | G→T | 100% | R18S (AGG→AGT) | ybhM → | UPF0005 family inner membrane protein |
RA | 817,430 | G→T | 5.1% | I175I (ATC→ATA) | ybhN ← | UPF0104 family inner membrane protein |
RA | 820,503 | C→A | 100% | T354T (ACG→ACT) | ybhR ← | inner membrane putative ABC superfamily transporter permease |
RA | 828,374 | G→T | 100% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 829,009 | G→T | 100% | D162Y (GAT→TAT) | dinG → | ATP‑dependent DNA helicase |
RA | 832,445 | G→T | 100% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
RA | 837,132 | C→T | 100% | intergenic (‑145/+120) | fiu ← / ← mcbA | catecholate siderophore receptor Fiu/colanic acid mucoidy stimulation protein |
RA | 837,716 | G→T | 100% | intergenic (‑204/‑72) | mcbA ← / → rlmF | colanic acid mucoidy stimulation protein/23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
RA | 842,041 | C→A | 100% | E179* (GAA→TAA) | glnP ← | glutamine transporter subunit |
RA | 843,299 | C→A | 100% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
RA | 850,161 | G→T | 100% | P353P (CCG→CCT) | ybiR → | putative transporter |
RA | 868,500 | A→T | 100% | S22S (TCA→TCT) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 872,975 | C→A | 22.5% | E173* (GAA→TAA) | rimO ← | ribosomal protein S12 methylthiotransferase; radical SAM superfamily |
RA | 876,395 | G→T | 100% | M71I (ATG→ATT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 876,447 | G→A | 100% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 879,085 | G→T | 100% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 882,672 | G→T | 100% | L42I (CTC→ATC) | ybjJ ← | putative transporter |
RA | 885,619 | G→T | 12.5% | A25A (GCG→GCT) | ybjM → | inner membrane protein |
RA | 888,964 | C→T | 100% | intergenic (+75/‑276) | ybjN → / → potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine transporter subunit: periplasmic‑binding component of ABC superfamily |
RA | 892,358 | G→T | 100% | V257L (GTG→TTG) | potH → | putrescine transporter subunit: membrane component of ABC superfamily |
RA | 907,013 | C→A | 8.5% | V198V (GTG→GTT) | hcr ← | HCP oxidoreductase, NADH‑dependent |
RA | 925,160 | G→T | 100% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 941,052 | C→A | 14.5% | intergenic (‑39/‑275) | ycaC ← / → ycaD | putative isochorismatase family hydrolase/putative MFS‑type transporter |
RA | 943,573 | G→T | 100% | A297S (GCC→TCC) | ycaM → | putative transporter |
RA | 950,239 | C→A | 8.3% | intergenic (‑317/+89) | focA ← / ← ycaO | formate channel/ribosomal protein S12 methylthiotransferase accessory factor |
RA | 955,568 | A→T | 100% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 968,415 | G→T | 100% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 992,767 | C→A | 100% | D68Y (GAT→TAT) | ssuE ← | NAD(P)H‑dependent FMN reductase |
RA | 994,328 | G→T | 100% | G128V (GGA→GTA) | elfD → | putative periplasmic pilin chaperone |
RA | 997,673 | A→T | 100% | T137T (ACA→ACT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 997,687 | G→T | 9.5% | R142L (CGA→CTA) | elfG → | putative fimbrial‑like adhesin protein |
RA | 997,965 | G→T | 100% | D235Y (GAT→TAT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 1,000,841 | G→T | 100% | A206A (GCG→GCT) | pyrD → | dihydro‑orotate oxidase, FMN‑linked |
RA | 1,003,597 | G→T | 100% | D100Y (GAC→TAC) | rlmL → | fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
RA | 1,010,999 | C→A | 5.8% | intergenic (+84/‑172) | pqiC → / → rmf | DUF330 family putative lipoprotein/ribosome modulation factor |
RA | 1,011,929 | T→A | 100% | intergenic (‑3/+66) | fabA ← / ← ycbZ | beta‑hydroxydecanoyl thioester dehydrase/putative peptidase |
RA | 1,024,703 | G→T | 100% | G241G (GGC→GGA) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
RA | 1,031,861 | G→A | 6.7% | G18S (GGC→AGC) | hyaE → | putative HyaA chaperone |
RA | 1,038,316 | G→T | 100% | R451S (CGT→AGT) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
RA | 1,048,928 | C→A | 100% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,049,407 | G→T | 100% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,055,132 | G→T | 100% | E141* (GAA→TAA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
RA | 1,057,226 | G→T | 10.0% | E839* (GAA→TAA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
RA | 1,058,131 | G→T | 42.8% | H61N (CAT→AAT) | cbpM ← | modulator of CbpA co‑chaperone |
RA | 1,062,937 | T→A | 15.7% | T76T (ACA→ACT) | wrbA ← | NAD(P)H:quinone oxidoreductase |
RA | 1,074,411 | G→A | 5.6% | intergenic (‑73/‑350) | putA ← / → putP | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase/proline:sodium symporter |
RA | 1,077,911 | A→C | 100% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,082,056 | G→T | 15.1% | S416* (TCA→TAA) | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase; c‑di‑GMP‑stimulated activity and dimerization |
RA | 1,083,443 | G→T | 100% | S624* (TCG→TAG) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,084,103 | A→T | 100% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,087,484 | A→T | 6.1% | Y88N (TAC→AAC) | pgaA ← | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein |
RA | 1,100,615 | A→C | 13.6% | N67H (AAT→CAT) | csgC → | curli assembly protein |
RA | 1,104,639 | C→A | 100% | intergenic (‑242/‑152) | opgC ← / → opgG | osmoregulated periplasmic glucan succinylation membrane protein/osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
RA | 1,113,450 | A→T | 100% | I161I (ATT→ATA) | yceI ← | secreted protein |
RA | 1,114,329 | C→A | 100% | L58F (TTG→TTT) | yceJ ← | putative cytochrome b561 |
RA | 1,116,548 | T→A | 100% | intergenic (‑137/+150) | bssS ← / ← dinI | biofilm regulator/DNA damage‑inducible protein I |
RA | 1,116,964 | A→G | 100% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,118,542 | C→G | 7.3% | S63T (AGC→ACC) | yceB ← | lipoprotein, DUF1439 family |
RA | 1,122,429 | G→T | 17.2% | S56S (TCG→TCT) | yceM → | putative oxidoreductase |
RA | 1,122,994 | C→A | 100% | R245S (CGC→AGC) | yceM → | putative oxidoreductase |
RA | 1,126,576 | A→C | 14.3% | T35P (ACC→CCC) | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
RA | 1,129,972 | G→T | 20.1% | D239Y (GAT→TAT) | flgF → | flagellar component of cell‑proximal portion of basal‑body rod |
RA | 1,131,521 | C→A | 100% | Q168K (CAG→AAG) | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
RA | 1,133,311 | T→A | 18.0% | L162Q (CTG→CAG) | flgJ → | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
RA | 1,137,384 | G→T | 100% | R814S (CGC→AGC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
RA | 1,139,402 | C→A | 100% | R141L (CGC→CTC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
RA | 1,139,516 | T→A | 16.9% | Q103L (CAG→CTG) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
RA | 1,146,692 | A→T | 100% | T189T (ACA→ACT) | fabG → | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase |
RA | 1,146,949 | T→A | 15.1% | intergenic (+89/‑122) | fabG → / → acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein (ACP) |
RA | 1,151,750 | G→T | 100% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 100% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,153,214 | T→C | 20.6% | intergenic (+184/‑111) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
RA | 1,156,310 | G→T | 100% | S233* (TCA→TAA) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
RA | 1,163,412 | G→T | 7.5% | D120Y (GAT→TAT) | ycfJ → | uncharacterized protein |
RA | 1,175,657 | G→T | 11.8% | E191* (GAA→TAA) | cobB → | deacetylase of acs and cheY, chemotaxis regulator |
RA | 1,176,163 | G→T | 6.0% | I187I (ATC→ATA) | ycfZ ← | inner membrane protein |
RA | 1,181,504 | G→T | 100% | D69Y (GAT→TAT) | pepT → | peptidase T |
RA | 1,191,676 | C→T | 100% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,688 | C→T | 100% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,209,662 | G→T | 11.9% | intergenic (‑147/+58) | bluR ← / ← bluF | repressor of blue light‑responsive genes/anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP |
RA | 1,211,169 | C→A | 100% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,214,055 | T→A | 18.4% | I424I (ATT→ATA) | ycgG → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 1,218,601 | T→A | 19.9% | K7* (AAG→TAG) | ymgI ← | uncharacterized protein |
RA | 1,219,533 | A→G | 100% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
RA | 1,220,996 | G→T | 100% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,224,292 | G→A | 100% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
RA | 1,226,292 | T→A | 100% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
RA | 1,228,591 | G→T | 100% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,235,594 | C→A | 5.4% | intergenic (+189/+197) | dadX → / ← cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter |
RA | 1,241,397 | T→A | 22.5% | H479L (CAC→CTC) | treA ← | periplasmic trehalase |
RA | 1,249,227 | G→T | 100% | R728S (CGT→AGT) | ycgV ← | putative adhesin |
RA | 1,257,232 | G→T | 100% | R34S (CGC→AGC) | prs ← | phosphoribosylpyrophosphate synthase |
RA | 1,260,354 | A→T | 15.7% | S395S (TCA→TCT) | hemA → | glutamyl tRNA reductase |
RA | 1,261,810 | G→A | 100% | A87A (GCG→GCA) | prmC → | N5‑glutamine methyltransferase, modifies release factors RF‑1 and RF‑2 |
RA | 1,264,442 | G→T | 100% | V274V (GTG→GTT) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
RA | 1,272,542 | A→T | 5.2% | L178Q (CTG→CAG) | narX ← | sensory histidine kinase in two‑component regulatory system with NarL |
RA | 1,277,786 | G→A | 100% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,281,042 | C→A | 25.2% | R150S (CGT→AGT) | narJ → | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
RA | 1,284,857 | G→T | 44.1% | D53Y (GAT→TAT) | rssA → | putative patatin‑like family phospholipase |
RA | 1,287,287 | A→T | 6.6% | V125V (GTA→GTT) | galU → | glucose‑1‑phosphate uridylyltransferase |
RA | 1,288,669 | A→T | 100% | intergenic (‑291/‑314) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
RA | 1,290,033 | G→T | 100% | pseudogene (416/567 nt) | insZ ← | pseudogene, transposase homolog |
RA | 1,290,877 | T→G | 7.1% | intergenic (‑99/+25) | insZ ← / ← adhE | pseudogene, transposase homolog/fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
RA | 1,296,729 | C→A | 100% | H431N (CAC→AAC) | oppA → | oligopeptide transporter subunit |
RA | 1,318,228 | C→A | 44.2% | S251* (TCA→TAA) | yciV → | PHP domain protein |
RA | 1,322,140 | T→A | 100% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,325,492 | A→T | 18.0% | E63V (GAA→GTA) | topA → | DNA topoisomerase I, omega subunit |
RA | 1,325,982 | G→T | 100% | T226T (ACG→ACT) | topA → | DNA topoisomerase I, omega subunit |
RA | 1,330,955 | G→T | 100% | D290Y (GAT→TAT) | acnA → | aconitate hydratase 1 |
RA | 1,334,951 | T→G | 6.4% | L46R (CTG→CGG) | yciM → | envelope integrity maintenance protein; EnvC‑interacting protein |
RA | 1,335,356 | A→T | 100% | H181L (CAT→CTT) | yciM → | envelope integrity maintenance protein; EnvC‑interacting protein |
RA | 1,336,599 | T→C | 21.2% | L141P (CTT→CCT) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
RA | 1,337,533 | G→T | 100% | A18E (GCA→GAA) | osmB ← | lipoprotein |
RA | 1,341,886 | T→A | 22.8% | A428A (GCA→GCT) | rnb ← | ribonuclease II |
RA | 1,348,772 | G→T | 100% | P2T (CCT→ACT) A319D (GCC→GAC) |
sapC ← sapB ← |
antimicrobial peptide transport ABC transporter permease antimicrobial peptide transport ABC transporter permease |
RA | 1,350,891 | G→T | 100% | S159R (AGC→AGA) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,351,022 | G→T | 100% | R116S (CGT→AGT) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,358,855 | G→T | 100% | G123C (GGC→TGC) | puuB → | gamma‑glutamylputrescine oxidoreductase |
RA | 1,365,283 | G→T | 100% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,394 | C→T | 100% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,386,008 | G→T | 100% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 100% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,389,852 | G→T | 100% | R110S (CGC→AGC) | ynaI ← | mechanosensitive channel protein, very small conductance |
RA | 1,397,366 | A→T | 18.8% | S49S (TCT→TCA) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,412,385 | G→T | 100% | N34K (AAC→AAA) | kilR ← | Rac prophage; inhibitor of ftsZ, killing protein |
RA | 1,424,234 | C→A | 100% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
RA | 1,428,643 | G→T | 11.3% | intergenic (‑162/+572) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
JC JC | 1,428,894 | IS2 (–) +5 bp | 100% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,430,873 | G→T | 100% | S93* (TCA→TAA) | ompN ← | outer membrane pore protein N, non‑specific |
RA | 1,437,184 | G→T | 21.8% | intergenic (‑84/‑124) | ldhA ← / → ydbH | fermentative D‑lactate dehydrogenase, NAD‑dependent/putative membrane‑anchored protein, function unknown |
RA | 1,439,518 | C→A | 100% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,451,422 | A→T | 100% | T246S (ACG→TCG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
RA | 1,454,724 | G→T | 100% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,457,725 | G→T | 100% | intergenic (+30/‑71) | paaK → / → paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
RA | 1,461,041 | A→T | 93.8% | pseudogene (1393/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,466,293 | C→A | 12.7% | pseudogene (1520/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,470,453 | C→A | 20.4% | V351V (GTC→GTA) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
RA | 1,477,565 | A→T | 40.7% | K83I (AAA→ATA) | hrpA → | putative ATP‑dependent helicase |
RA | 1,478,971 | G→A | 100% | E552K (GAG→AAG) | hrpA → | putative ATP‑dependent helicase |
RA | 1,479,733 | G→T | 100% | D806Y (GAT→TAT) | hrpA → | putative ATP‑dependent helicase |
RA | 1,480,656 | C→A | 20.1% | I1113I (ATC→ATA) | hrpA → | putative ATP‑dependent helicase |
RA | 1,482,005 | G→T | 100% | D172Y (GAT→TAT) | ydcF → | DUF218 superfamily protein, SAM‑binding |
RA | 1,483,460 | G→T | 21.0% | A324A (GCG→GCT) | aldA → | aldehyde dehydrogenase A, NAD‑linked |
RA | 1,505,309 | G→T | 5.8% | A350A (GCG→GCT) | ydcR → | putative DNA‑binding transcriptional regulator/putative amino transferase |
RA | 1,508,681 | C→A | 100% | F198L (TTC→TTA) | ydcU → | putative spermidine/putrescine transporter subunit |
RA | 1,510,854 | G→T | 46.5% | A340A (GCG→GCT) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
RA | 1,514,060 | A→T | 16.4% | P259P (CCA→CCT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
RA | 1,514,177 | G→T | 100% | E298D (GAG→GAT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
RA | 1,514,858 | G→A | 100% | E114K (GAA→AAA) | mcbR → | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
RA | 1,519,349 | T→A | 100% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,520,123 | C→A | 6.6% | A39S (GCC→TCC) | ansP ← | L‑asparagine transporter |
RA | 1,522,387 | C→A | 100% | pseudogene (229/2037 nt) | rhsE → | pseudogene, Rhs family protein |
RA | 1,523,317 | G→T | 100% | pseudogene (1159/2037 nt) | rhsE → | pseudogene, Rhs family protein |
RA | 1,523,802 | T→G | 56.4% | pseudogene (1644/2037 nt) | rhsE → | pseudogene, Rhs family protein |
RA | 1,526,607 | G→A | 100% | D179N (GAT→AAT) | ydcC → | H repeat‑associated putative transposase |
RA | 1,528,935 | A→T | 10.3% | N219Y (AAT→TAT) | nhoA → | N‑hydroxyarylamine O‑acetyltransferase |
RA | 1,531,029 | G→T | 100% | R180S (CGC→AGC) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
RA | 1,534,409 | G→T | 100% | V813V (GTC→GTA) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,537,806 | A→T | 100% | L171* (TTA→TAA) | narU ← | nitrate/nitrite transporter |
RA | 1,539,827 | C→A | 100% | pseudogene (145/951 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
RA | 1,540,399 | A→G | 47.3% | intergenic (‑114/+146) | yddL ← / ← yddG | putative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein/aromatic amino acid exporter |
RA | 1,544,432 | G→T | 20.1% | T925T (ACG→ACT) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
RA | 1,548,144 | G→T | 100% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,548,216 | A→T | 100% | intergenic (‑121/+13) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,551,620 | C→A | 40.9% | D226Y (GAC→TAC) | ddpF ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,552,629 | C→A | 100% | D216Y (GAT→TAT) | ddpD ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,557,309 | C→A | 16.4% | D9Y (GAT→TAT) | ddpX ← | D‑ala‑D‑ala dipeptidase, Zn‑dependent |
RA | 1,558,685 | G→T | 100% | R436S (CGC→AGC) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
RA | 1,559,507 | T→A | 41.5% | N162Y (AAT→TAT) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
RA | 1,563,276 | G→T | 100% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 100% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,569,502 | T→G | 100% | intergenic (‑43/+2) | pqqL ← / ← yddB | putative periplasmic M16 family zinc metalloendopeptidase/putative TonB‑dependent outer membrane receptor |
RA | 1,570,428 | G→T | 100% | I483I (ATC→ATA) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,570,826 | C→A | 100% | D351Y (GAC→TAC) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,572,026 | A→T | 15.6% | L525* (TTA→TAA) | yddA ← | putative multidrug transporter subunit of ABC superfamily, membrane component/ATP‑binding component |
RA | 1,574,523 | T→A | 100% | L175F (TTA→TTT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
RA | 1,575,339 | G→T | 100% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,576,325 | T→A | 100% | N153Y (AAT→TAT) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,580,852 | C→A | 100% | intergenic (‑109/+225) | ydeP ← / ← ydeQ | putative oxidoreductase/putative fimbrial‑like adhesin protein |
RA | 1,585,699 | C→A | 17.0% | T245T (ACG→ACT) | hipA ← | inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
RA | 1,586,871 | G→T | 100% | intergenic (‑172/+51) | hipB ← / ← yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
RA | 1,590,878 | A→T | 100% | pseudogene (1367/5323 nt) | yneO ← | pseudogene, AidA homolog |
RA | 1,598,250 | G→T | 9.5% | T325T (ACG→ACT) | lsrC → | autoinducer 2 import system permease protein |
RA | 1,600,091 | G→T | 18.5% | E262* (GAA→TAA) | lsrB → | autoinducer 2‑binding protein |
RA | 1,601,871 | C→A | 21.8% | P90Q (CCG→CAG) | tam → | trans‑aconitate methyltransferase |
RA | 1,603,440 | G→A | 100% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
RA | 1,607,793 | C→A | 5.7% | E390* (GAG→TAG) | sad ← | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
RA | 1,614,089 | G→T | 100% | E87* (GAG→TAG) | marA → | multiple antibiotic resistance transcriptional regulator |
RA | 1,614,837 | G→T | 47.8% | I186I (ATC→ATA) | eamA ← | cysteine and O‑acetyl‑L‑serine efflux system |
RA | 1,617,498 | G→T | 11.7% | R204S (CGC→AGC) | dgcZ ← | diguanylate cyclase, zinc‑sensing |
RA | 1,620,961 | T→G | 100% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,621,733 | T→A | 13.7% | intergenic (‑96/‑41) | dcp ← / → ydfG | dipeptidyl carboxypeptidase II/NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase |
RA | 1,622,209 | G→T | 16.9% | V146F (GTT→TTT) | ydfG → | NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase |
RA | 1,624,984 | C→A | 5.4% | E63* (GAA→TAA) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 1,626,583 | G→T | 7.3% | intergenic (‑41/‑746) | ydfJ ← / → ydfK | pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein/cold shock protein, function unknown, Qin prophage |
RA | 1,628,207 | G→A | 100% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,638,982 | C→A | 6.2% | E60* (GAG→TAG) | rem ← | Qin prophage; uncharacterized protein |
RA | 1,642,135 | C→T | 100% | intergenic (‑28/‑56) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB |
RA | 1,642,639 | G→T | 23.1% | intergenic (+41/‑126) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
RA | 1,643,955 | C→A | 43.8% | A30A (GCC→GCA) | dicB → | Qin prophage; cell division inhibition protein |
RA | 1,644,550 | C→A | 17.7% | pseudogene (216/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
RA | 1,646,372 | C→A | 100% | pseudogene (565/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
RA | 1,650,532 | G→T | 19.4% | R31L (CGT→CTT) | speG → | spermidine N1‑acetyltransferase |
RA | 1,651,166 | C→A | 14.0% | A183A (GCG→GCT) | ynfC ← | UPF0257 family lipoprotein |
RA | 1,661,763 | C→A | 100% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,669,592 | G→T | 100% | F342L (TTC→TTA) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
RA | 1,672,918 | A→C | 8.8% | S79R (AGC→CGC) | ydgH → | DUF1471 family periplasmic protein |
RA | 1,673,380 | T→A | 7.4% | S233T (TCA→ACA) | ydgH → | DUF1471 family periplasmic protein |
RA | 1,680,642 | C→A | 100% | E68D (GAG→GAT) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
RA | 1,684,105 | C→A | 100% | intergenic (+97/‑4) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
RA | 1,689,180 | T→G | 100% | E383D (GAA→GAC) | uidA ← | beta‑D‑glucuronidase |
RA | 1,692,573 | C→A | 100% | D289Y (GAT→TAT) | malI ← | transcriptional repressor of Mal regulon |
RA | 1,692,966 | C→A | 16.6% | D158Y (GAT→TAT) | malI ← | transcriptional repressor of Mal regulon |
RA | 1,696,612 | A→T | 100% | E41D (GAA→GAT) | add → | adenosine deaminase |
RA | 1,699,862 | T→A | 100% | L119* (TTG→TAG) | ydgK → | DUF2569 family inner membrane protein |
RA | 1,700,008 | T→A | 17.5% | intergenic (+61/‑16) | ydgK → / → rsxA | DUF2569 family inner membrane protein/SoxR iron‑sulfur cluster reduction factor component; inner membrane protein of electron transport complex |
RA | 1,701,282 | A→C | 12.6% | Q36P (CAG→CCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,702,966 | T→A | 5.4% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,015 | G→C | 8.1% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,706,839 | C→T | 16.2% | intergenic (+424/‑187) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
RA | 1,711,397 | C→T | 100% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,712,562 | C→A | 44.1% | D31Y (GAT→TAT) | mliC ← | inhibitor of c‑type lysozyme, membrane‑bound; putative lipoprotein |
RA | 1,713,571 | G→T | 17.1% | H97N (CAC→AAC) | anmK ← | anhydro‑N‑acetylmuramic acid kinase |
RA | 1,715,383 | C→A | 20.8% | F34L (TTC→TTA) | ydhI → | DUF1656 family putative inner membrane efflux pump associated protein |
RA | 1,723,809 | G→T | 100% | E156* (GAA→TAA) | lhr → | putative ATP‑dependent helicase |
RA | 1,729,434 | C→A | 5.5% | S248Y (TCT→TAT) | mepH → | murein DD‑endopeptidase, space‑maker hydrolase |
RA | 1,731,596 | C→A | 18.1% | intergenic (‑49/+117) | ydhP ← / ← ynhF | putative transporter/stress response membrane |
RA | 1,754,950 | T→A | 100% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,755,150 | A→T | 47.4% | L300* (TTG→TAG) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,757,175 | G→T | 9.4% | I364I (ATC→ATA) | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,759,262 | C→A | 10.9% | D40Y (GAC→TAC) | ydiH ← | uncharacterized protein |
RA | 1,764,150 | G→T | 100% | D274Y (GAT→TAT) | ydiK → | UPF0118 family inner membrane protein |
RA | 1,767,220 | T→A | 19.2% | F151Y (TTC→TAC) | ydiN → | MFS transporter superfamily protein |
RA | 1,768,689 | C→A | 100% | S215* (TCA→TAA) | ydiB → | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
RA | 1,769,763 | T→A | 100% | intergenic (+62/‑81) | aroD → / → ydiF | 3‑dehydroquinate dehydratase/putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,770,281 | T→A | 100% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,777,451 | C→A | 100% | A55E (GCG→GAG) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
RA | 1,782,041 | C→A | 9.9% | R114S (CGT→AGT) | ppsR → | bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
RA | 1,782,353 | C→A | 15.0% | R218S (CGC→AGC) | ppsR → | bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
RA | 1,783,091 | G→T | 100% | E134* (GAG→TAG) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
RA | 1,796,101 | C→A | 100% | D243Y (GAC→TAC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,800,129 | C→T | 100% | W71* (TGG→TAG) | ydiY ← | acid‑inducible putative outer membrane protein |
RA | 1,802,047 | G→A | 100% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,803,109 | C→T | 100% | A128T (GCC→ACC) | yniB ← | putative inner membrane protein |
RA | 1,809,935 | G→T | 6.3% | A604A (GCG→GCT) | katE → | catalase HPII, heme d‑containing |
RA | 1,812,514 | C→A | 100% | D82Y (GAT→TAT) | chbF ← | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
RA | 1,820,888 | C→A | 100% | C98F (TGC→TTC) | astE ← | succinylglutamate desuccinylase |
RA | 1,821,696 | A→T | 100% | L274Q (CTG→CAG) | astB ← | succinylarginine dihydrolase |
RA | 1,823,802 | C→A | 15.3% | V64F (GTT→TTT) | astD ← | succinylglutamic semialdehyde dehydrogenase |
RA | 1,825,763 | C→A | 100% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,829,319 | C→A | 100% | I85I (ATC→ATA) | ydjZ → | TVP38/TMEM64 family inner membrane protein |
RA | 1,830,978 | G→T | 10.0% | D217Y (GAT→TAT) | ynjB → | putative ABC superfamily transporter periplasmic‑binding protein |
RA | 1,832,413 | C→A | 100% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 100% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,835,330 | Δ1 bp | 5.1% | coding (331/621 nt) | ynjF ← | inner membrane protein, phosphatidylglycerophosphate synthase homolog |
RA | 1,836,192 | T→A | 100% | I67I (ATA→ATT) | ynjH ← | DUF1496 family protein |
RA | 1,839,854 | C→A | 41.1% | R455L (CGC→CTC) | topB ← | DNA topoisomerase III |
RA | 1,852,274 | C→A | 100% | D273Y (GAT→TAT) | ydjJ ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,852,913 | C→A | 42.0% | E60* (GAA→TAA) | ydjJ ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,857,705 | G→T | 8.6% | L226L (CTG→CTT) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
RA | 1,859,132 | A→C | 100% | A254A (GCT→GCG) | yeaE ← | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
RA | 1,860,183 | G→T | 100% | R183S (CGC→AGC) | mipA ← | scaffolding protein for murein synthesizing machinery |
RA | 1,863,753 | C→A | 7.8% | T181K (ACG→AAG) | yeaH → | UPF0229 family protein |
RA | 1,865,000 | C→A | 100% | P120Q (CCA→CAA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,422 | C→A | 100% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,714 | T→A | 6.6% | F358Y (TTC→TAC) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,870,743 | C→A | 100% | H272N (CAT→AAT) | yeaN → | putative transporter |
RA | 1,872,054 | A→T | 100% | E28V (GAG→GTG) | yeaP → | diguanylate cyclase |
RA | 1,872,520 | G→T | 100% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,874,924 | T→A | 100% | V31V (GTA→GTT) | leuE ← | leucine efflux protein |
RA | 1,875,096 | G→T | 100% | intergenic (‑80/+47) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
RA | 1,881,645 | C→A | 100% | D202Y (GAT→TAT) | rnd ← | ribonuclease D |
RA | 1,884,978 | C→A | 5.3% | D183Y (GAT→TAT) | tsaB ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
RA | 1,885,611 | G→T | 100% | R628S (CGT→AGT) | yoaA ← | putative ATP‑dependent helicase, DinG family |
RA | 1,886,725 | G→T | 100% | I256I (ATC→ATA) | yoaA ← | putative ATP‑dependent helicase, DinG family |
RA | 1,901,236 | C→A | 15.0% | D28Y (GAT→TAT) | rlmA ← | 23S rRNA m(1)G745 methyltransferase, SAM‑dependent |
RA | 1,904,418 | C→A | 14.9% | intergenic (‑62/‑115) | kdgR ← / → yebQ | KDG regulon transcriptional repressor/putative transporter |
RA | 1,909,342 | T→A | 100% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,917,818 | C→A | 17.0% | R49L (CGA→CTA) | yebY ← | DUF2511 family protein |
RA | 1,922,164 | C→A | 47.2% | P311P (CCG→CCT) | ptrB ← | protease II |
RA | 1,922,899 | G→T | 13.1% | I66I (ATC→ATA) | ptrB ← | protease II |
RA | 1,932,701 | C→A | 42.7% | Q266K (CAG→AAG) | pykA → | pyruvate kinase II |
RA | 1,940,498 | G→T | 100% | intergenic (‑61/‑10) | yobI ← / → yebB | uncharacterized protein/DUF830 family protein |
RA | 1,943,687 | T→A | 11.4% | N365Y (AAC→TAC) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,944,177 | C→A | 100% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,951,127 | C→A | 20.5% | A46A (GCG→GCT) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
RA | 1,951,334 | C→A | 100% | T352T (ACG→ACT) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
RA | 1,953,876 | C→A | 100% | P76P (CCG→CCT) | yecM ← | putative metal‑binding enzyme |
RA | 1,959,915 | C→A | 100% | P178P (CCG→CCT) | flhB ← | flagellin export apparatus, substrate specificity protein |
RA | 1,962,923 | C→A | 100% | M233I (ATG→ATT) | cheR ← | chemotaxis regulator, protein‑glutamate methyltransferase |
RA | 1,969,291 | G→T | 100% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,970,325 | C→A | 5.6% | R63L (CGG→CTG) | motB ← | protein that enables flagellar motor rotation |
RA | 1,970,820 | G→T | 41.1% | R193S (CGT→AGT) | motA ← | proton conductor component of flagella motor |
RA | 1,984,987 | C→A | 100% | T38T (ACG→ACT) | yecA ← | UPF0149 family protein |
RA | 1,986,289 | T→A | 100% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
RA | 1,993,530 | C→A | 100% | E113* (GAG→TAG) | fliY ← | cystine transporter subunit |
RA | 1,996,056 | A→T | 6.4% | I344I (ATT→ATA) | fliC ← | flagellar filament structural protein (flagellin) |
RA | 1,997,314 | G→T | 100% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
RA | 1,999,632 | G→T | 100% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
RA | 2,002,354 | C→A | 100% | L199L (CTC→CTA) | yedE → | UPF0394 family sulfur transport domain‑containing inner membrane protein |
RA | 2,004,533 | G→T | 100% | T151T (ACG→ACT) | yedL → | putative acyl transferase |
RA | 2,012,581 | G→T | 12.1% | E239* (GAA→TAA) | fliK → | flagellar hook‑length control protein |
RA | 2,020,166 | C→A | 100% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,021,954 | C→A | 48.9% | E298D (GAG→GAT) | yedI ← | DUF808 family inner membrane protein |
RA | 2,035,090 | C→A | 100% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,041,346 | C→A | 100% | I976I (ATC→ATA) | yeeJ → | putative adhesin |
RA | 2,046,600 | G→T | 100% | pseudogene (210/1053 nt) | yeeL ← | pseudogene, glycosyltransferase homology |
RA | 2,049,111 | C→A | 100% | T190T (ACC→ACA) | amn → | AMP nucleosidase |
RA | 2,051,691 | G→T | 7.7% | S494* (TCG→TAG) | yeeO ← | putative multdrug exporter, MATE family |
RA | 2,064,466 | C→A | 15.6% | pseudogene (326/552 nt) | yeeP → | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone |
RA | 2,071,512 | T→G | 18.0% | pseudogene (92/168 nt) | yeeW → | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related |
RA | 2,073,080 | C→A | 10.9% | L331L (CTG→CTT) | yeeA ← | putative transporter, FUSC family inner membrane protein |
RA | 2,074,680 | A→T | 100% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
RA | 2,077,212 | A→T | 100% | N326Y (AAT→TAT) | sbcB → | exodeoxyribonuclease I; exonuclease I |
RA | 2,077,698 | A→T | 10.7% | intergenic (+34/+9) | sbcB → / ← yeeD | exodeoxyribonuclease I; exonuclease I/putative TusA family sulfurtransferase |
JC JC | 2,080,274 | IS2 (–) +5 bp | 100% | coding (266‑270/1359 nt) | plaP ← | putrescine importer, low affinity |
RA | 2,086,004 | C→A | 100% | A42A (GCC→GCA) | hisC → | histidinol‑phosphate aminotransferase |
RA | 2,093,612 | C→A | 45.2% | E380* (GAA→TAA) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
RA | 2,093,659 | C→T | 20.0% | C364Y (TGC→TAC) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
RA | 2,093,906 | C→A | 13.4% | E282* (GAG→TAG) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
RA | 2,097,457 | T→A | 6.0% | K178N (AAA→AAT) | wbbK ← | lipopolysaccharide biosynthesis protein |
RA | 2,098,995 | C→A | 100% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,101,912 | T→G | 100% | E385A (GAG→GCG) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,107,728 | C→A | 23.3% | E27D (GAG→GAT) | wcaN ← | putative regulatory subunit for GalU |
RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
RA | 2,110,346 | G→A | 100% | T88I (ACC→ATC) | wcaL ← | putative glycosyl transferase |
RA | 2,114,911 | A→T | 100% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,122,013 | G→T | 100% | T119T (ACC→ACA) | wcaF ← | putative acyl transferase |
RA | 2,122,266 | G→T | 100% | S35* (TCG→TAG) | wcaF ← | putative acyl transferase |
RA | 2,122,453 | C→T | 100% | A227T (GCT→ACT) | wcaE ← | putative glycosyl transferase |
RA | 2,122,653 | C→T | 100% | W160* (TGG→TAG) | wcaE ← | putative glycosyl transferase |
RA | 2,128,128 | T→A | 100% | K336* (AAA→TAA) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
RA | 2,138,039 | C→A | 51.0% | I431I (ATC→ATA) | yegE → | putative diguanylate cyclase |
RA | 2,139,910 | G→T | 100% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,141,613 | G→T | 52.3% | V153V (GTG→GTT) | yegD → | Hsp70 chaperone family protein |
RA | 2,144,474 | C→A | 100% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,146,917 | C→A | 8.2% | noncoding (128/143 nt) | sibA → | sRNA antisense regulator of toxic IbsA protein |
RA | 2,149,603 | A→T | 100% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
RA | 2,152,444 | C→A | 100% | A193E (GCG→GAG) | mdtC → | multidrug efflux system, subunit C |
RA | 2,167,068 | C→A | 20.7% | V230V (GTG→GTT) | gatC ← | galactitol PTS permease ‑ GatC subunit |
RA | 2,168,795 | C→A | 100% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,170,534 | C→A | 23.0% | T50T (ACG→ACT) | gatY ← | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
RA | 2,170,713 | C→A | 25.9% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,724 | G→T | 28.2% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,757 | T→A | 12.4% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,178,915 | C→G | 15.2% | intergenic (‑135/+88) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
RA | 2,178,937 | A→T | 12.3% | intergenic (‑157/+66) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
RA | 2,179,205 | G→T | 100% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
RA | 2,181,645 | A→G | 100% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
RA | 2,193,958 | T→G | 18.8% | F67L (TTT→TTG) | yehI → | DUF4132 domain‑containing protein |
RA | 2,194,695 | T→A | 100% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
RA | 2,195,449 | A→T | 100% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,198,343 | C→A | 100% | S90Y (TCT→TAT) | yehL → | putative ABC superfamily transporter ATP‑binding subunit |
RA | 2,209,162 | C→A | 100% | I9I (ATC→ATA) | yohO → | putative membrane protein |
RA | 2,211,664 | C→A | 23.9% | D125Y (GAT→TAT) | yehY ← | inner membrane putative ABC superfamily transporter permease |
RA | 2,216,296 | C→A | 100% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,218,022 | C→A | 100% | E110* (GAA→TAA) | pbpG ← | D‑alanyl‑D‑alanine endopeptidase |
RA | 2,222,656 | A→G | 20.8% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
RA | 2,222,970 | T→A | 100% | N299Y (AAT→TAT) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,223,247 | C→T | 100% | W206* (TGG→TGA) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,225,190 | C→T | 100% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
RA | 2,226,594 | G→T | 18.7% | G80C (GGT→TGT) | sanA → | vancomycin high temperature exclusion protein, DUF218 superfamily protein |
RA | 2,231,230 | C→A | 5.5% | M1M (ATG→ATT) † | mglC ← | methyl‑galactoside transporter subunit |
RA | 2,234,532 | C→A | 100% | D206Y (GAT→TAT) | galS ← | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
RA | 2,237,098 | G→T | 100% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,241,222 | T→G | 100% | I264L (ATT→CTT) | lysP ← | lysine transporter |
RA | 2,243,991 | T→A | 45.2% | W266R (TGG→AGG) | yeiH → | UPF0324 family inner membrane protein |
RA | 2,248,657 | C→A | 100% | K3N (AAG→AAT) | rihB ← | ribonucleoside hydrolase 2 |
RA | 2,263,137 | C→A | 100% | intergenic (+91/‑321) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,264,143 | G→A | 100% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,270,918 | C→A | 19.3% | N380K (AAC→AAA) | yejF → | microcin C transporter, ATP‑binding subunit; ABC family |
RA | 2,277,743 | A→T | 19.0% | N46Y (AAC→TAC) | yejL → | UPF0352 family protein |
RA | 2,287,829 | C→A | 100% | S185S (TCG→TCT) | ccmF ← | heme lyase, CcmF subunit |
RA | 2,289,043 | C→A | 100% | W8L (TGG→TTG) | ccmD ← | cytochrome c biogenesis protein |
RA | 2,289,374 | C→A | 100% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,298,128 | C→T | 7.1% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,303,070 | T→G | 100% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,305,116 | C→A | 100% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,305,135 | T→C | 100% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
RA | 2,318,825 | G→T | 100% | V197V (GTG→GTT) | atoE → | short chain fatty acid transporter |
RA | 2,319,752 | C→A | 100% | N55K (AAC→AAA) | atoB → | acetyl‑CoA acetyltransferase |
RA | 2,322,609 | C→A | 100% | W223L (TGG→TTG) | yfaQ ← | tandem DUF2300 domain protein, putative host defense protein |
RA | 2,330,502 | C→A | 100% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,342,897 | C→A | 100% | D19Y (GAC→TAC) | inaA ← | acid‑inducible Kdo/WaaP family putative kinase |
RA | 2,348,894 | T→A | 100% | V384E (GTG→GAG) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,352,573 | C→A | 100% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,358,641 | G→T | 100% | I153I (ATC→ATA) | ais ← | putative LPS core heptose(II)‑phosphate phosphatase |
RA | 2,359,673 | G→T | 100% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 100% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,370,361:1 | +G | 100% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 100% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,376,959 | C→T | 100% | N256N (AAC→AAT) | elaD → | protease, capable of cleaving an AMC‑ubiquitin model substrate |
RA | 2,380,078 | C→T | 100% | S247F (TCT→TTT) | yfbL → | putative peptidase |
RA | 2,383,897 | C→A | 100% | R363L (CGC→CTC) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,399,210 | G→T | 100% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,400,858 | C→A | 100% | intergenic (‑738/‑182) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
RA | 2,404,772 | C→A | 100% | A20A (GCG→GCT) | yfbS ← | putative transporter |
RA | 2,405,946 | T→G | 100% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,409,935 | G→T | 39.9% | A570A (GCG→GCT) | pta → | phosphate acetyltransferase |
RA | 2,412,205 | C→A | 100% | D151Y (GAT→TAT) | yfcD ← | putative NUDIX hydrolase |
RA | 2,416,101 | C→A | 100% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
RA | 2,422,841 | C→A | 100% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 100% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,424,448 | A→C | 23.0% | intergenic (‑206/+53) | cvpA ← / ← dedD | colicin V production membrane protein/membrane‑anchored periplasmic protein involved in septation |
RA | 2,425,944 | C→A | 13.7% | D160Y (GAC→TAC) | folC ← | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
RA | 2,428,546 | C→A | 14.0% | V190V (GTG→GTT) | truA ← | tRNA pseudouridine(38‑40) synthase |
RA | 2,447,745 | C→A | 15.0% | pseudogene (736/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
RA | 2,450,335 | C→T | 100% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,346 | G→T | 100% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,770 | C→A | 17.9% | V623V (GTG→GTT) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,452,454 | G→T | 100% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,454,297 | T→G | 100% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,456,705 | C→A | 100% | S72Y (TCC→TAC) | yfdF → | uncharacterized protein |
RA | 2,459,976 | G→T | 100% | intergenic (+114/‑48) | argW → / → intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
RA | 2,463,489 | G→T | 6.9% | E294* (GAA→TAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,906 | C→A | 21.2% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,910 | G→T | 11.8% | R434I (AGA→ATA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,915 | C→A | 13.5% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,920 | C→A | 6.3% | D437E (GAC→GAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,466,710 | A→T | 6.7% | pseudogene (355/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
RA | 2,474,353 | G→T | 100% | Q435K (CAG→AAG) | emrY ← | putative multidrug efflux system |
RA | 2,474,418 | G→T | 100% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,476,524 | T→A | 100% | N99Y (AAT→TAT) | emrK ← | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
RA | 2,478,201 | G→T | 18.6% | E117* (GAA→TAA) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
RA | 2,481,488 | A→T | 21.3% | intergenic (+42/+14) | evgS → / ← yfdE | hybrid sensory histidine kinase in two‑component regulatory system with EvgA/acetyl‑CoA:oxalate CoA‑transferase |
RA | 2,481,974 | G→T | 100% | S225* (TCA→TAA) | yfdE ← | acetyl‑CoA:oxalate CoA‑transferase |
RA | 2,488,416 | G→T | 100% | P80P (CCG→CCT) | ypdI → | putative lipoprotein involved in colanic acid biosynthesis |
RA | 2,497,946 | G→T | 100% | L7I (CTC→ATC) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,499,568 | C→A | 100% | D182Y (GAC→TAC) | ypdF ← | Xaa‑Pro aminopeptidase |
RA | 2,511,828 | T→A | 5.1% | intergenic (‑118/‑118) | alaW ← / → yfeC | tRNA‑Ala/DUF1323 family putative DNA‑binding protein |
RA | 2,513,935 | A→T | 35.6% | Y73N (TAC→AAC) | gltX ← | glutamyl‑tRNA synthetase |
RA | 2,520,652 | C→A | 100% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
RA | 2,524,056 | C→A | 100% | A179A (GCG→GCT) | zipA ← | FtsZ stabilizer |
RA | 2,526,794 | C→T | 100% | intergenic (+55/‑329) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
RA | 2,542,627 | T→G | 100% | I389M (ATT→ATG) | yfeW → | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity |
RA | 2,543,355 | T→A | 14.3% | N184Y (AAC→TAC) | yfeX ← | porphyrinogen oxidase, cytoplasmic |
RA | 2,543,629 | G→T | 5.3% | F92L (TTC→TTA) | yfeX ← | porphyrinogen oxidase, cytoplasmic |
RA | 2,549,676 | C→A | 100% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
RA | 2,551,181 | G→T | 5.0% | F286L (TTC→TTA) | eutB ← | ethanolamine ammonia‑lyase, large subunit, heavy chain |
RA | 2,556,786 | G→T | 100% | intergenic (+310/‑165) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,567,211 | C→A | 100% | D152Y (GAT→TAT) | eutT ← | cobalamin adenosyltransferase involved in ethanolamine utilization |
RA | 2,567,775 | G→T | 15.1% | I196I (ATC→ATA) | eutQ ← | RmlC‑like cupin domain protein |
RA | 2,568,720 | C→T | 100% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
RA | 2,573,530 | G→T | 12.8% | G179V (GGT→GTT) | tktB → | transketolase 2, thiamine triphosphate‑binding |
RA | 2,574,820 | C→A | 100% | A609E (GCG→GAG) | tktB → | transketolase 2, thiamine triphosphate‑binding |
RA | 2,576,325 | C→A | 100% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,579,561 | G→T | 100% | G158C (GGC→TGC) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP (NarL) |
RA | 2,587,029:1 | +G | 100% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,933 | G→A | 100% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,597,173 | T→G | 100% | L666R (CTG→CGG) | hyfB → | hydrogenase 4, membrane subunit |
RA | 2,606,516 | G→T | 100% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,610,919 | C→A | 100% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
RA | 2,614,168 | C→A | 100% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,618,693 | G→T | 100% | E74* (GAA→TAA) | ppx → | exopolyphosphatase |
RA | 2,628,166 | G→T | 15.0% | A192A (GCG→GCT) | xseA → | exonuclease VII, large subunit |
RA | 2,632,012 | C→A | 100% | intergenic (‑1/+10) | bamB ← / ← yfgM | BamABCDE complex OM biogenesis lipoprotein/putative anti‑RcsB factor |
RA | 2,633,402 | C→A | 94.7% | R178L (CGC→CTC) | hisS ← | histidyl tRNA synthetase |
RA | 2,634,417 | T→G | 16.8% | K249N (AAA→AAC) | ispG ← | 1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase |
RA | 2,639,116 | C→A | 100% | A523A (GCG→GCT) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
RA | 2,643,336 | C→A | 100% | D771Y (GAC→TAC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,645,592 | C→A | 100% | D19Y (GAC→TAC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,651,665 | G→T | 100% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,659,594 | C→A | 100% | L267L (CTC→CTA) | csiE → | stationary phase inducible protein |
RA | 2,660,155 | G→A | 7.1% | Q351* (CAA→TAA) | hcaT ← | putative 3‑phenylpropionic transporter |
RA | 2,664,138 | A→C | 49.4% | E130D (GAA→GAC) | hcaF → | 3‑phenylpropionate dioxygenase, small (beta) subunit |
RA | 2,665,772 | G→T | 100% | E123* (GAA→TAA) | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
RA | 2,668,397 | C→A | 47.7% | G242C (GGT→TGT) | yphC ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 2,669,978 | C→A | 100% | A69A (GCG→GCT) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
RA | 2,671,274 | C→A | 100% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,681,873 | T→A | 100% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,683,829 | C→A | 100% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,688,006 | C→A | 100% | P299P (CCG→CCT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
RA | 2,689,267 | C→A | 100% | I36I (ATC→ATA) | mltF → | membrane‑bound lytic transglycosylase F, murein hydrolase |
RA | 2,692,793 | C→A | 100% | H226N (CAT→AAT) | yfhH → | putative DNA‑binding transcriptional regulator |
RA | 2,694,843 | G→T | 100% | I82I (ATC→ATA) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
RA | 2,699,380 | C→A | 100% | P368P (CCG→CCT) | lepA ← | back‑translocating elongation factor EF4, GTPase |
RA | 2,699,880 | T→A | 100% | N202Y (AAC→TAC) | lepA ← | back‑translocating elongation factor EF4, GTPase |
JC JC | 2,709,656 | IS2 (–) +5 bp | 100% | coding (149‑153/384 nt) | grcA ← | autonomous glycyl radical cofactor |
RA | 2,711,755 | C→A | 100% | D45Y (GAC→TAC) | yfiF ← | putative methyltransferase |
RA | 2,715,643 | G→T | 100% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,725,747 | G→T | 100% | R596S (CGC→AGC) | clpB ← | protein disaggregation chaperone |
RA | 2,726,466 | C→A | 6.5% | R356L (CGT→CTT) | clpB ← | protein disaggregation chaperone |
RA | 2,726,786 | C→A | 100% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
RA | 2,727,416 | C→A | 100% | L39L (CTG→CTT) | clpB ← | protein disaggregation chaperone |
RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
RA | 2,736,714 | C→A | 100% | R325S (CGC→AGC) | yfiN → | putative membrane‑anchored diguanylate cyclase with an N‑terminal periplasmic domain |
RA | 2,743,438 | C→A | 100% | intergenic (+19/+36) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
RA | 2,751,558 | G→T | 100% | T134T (ACC→ACA) | yfjH ← | CP4‑57 prophage; uncharacterized protein |
RA | 2,763,057 | C→A | 100% | intergenic (+212/‑5) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
RA | 2,766,449 | C→A | 5.2% | pseudogene (93/117 nt) | yfjV ← | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein |
RA | 2,771,358 | G→A | 100% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,778,820 | G→A | 100% | intergenic (‑450/+301) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,779,067 | C→A | 100% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,796,584 | T→A | 5.8% | F626L (TTT→TTA) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
RA | 2,798,195 | A→T | 100% | K8* (AAA→TAA) | proV → | glycine betaine transporter subunit |
RA | 2,801,706 | C→A | 100% | pseudogene (32/1178 nt) | ygaY → | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein |
RA | 2,808,907 | C→A | 100% | E298* (GAA→TAA) | gshA ← | glutamate‑cysteine ligase |
RA | 2,820,170 | C→A | 20.9% | I140I (ATC→ATA) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
RA | 2,825,783 | C→T | 100% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,826,961 | G→T | 7.7% | R376L (CGA→CTA) | norV → | anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,828,952 | C→A | 100% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
RA | 2,831,086 | C→A | 100% | E127* (GAA→TAA) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
RA | 2,831,929 | T→A | 100% | E232V (GAA→GTA) | ascG ← | asc operon transcriptional repressor; prpBC operon repressor |
RA | 2,835,094 | C→A | 100% | P249Q (CCG→CAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,835,291 | T→G | 9.7% | C315G (TGC→GGC) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,836,554 | G→T | 100% | I84I (ATC→ATA) | hycH ← | hydrogenase 3 maturation protein |
RA | 2,837,721 | C→A | 100% | D131Y (GAC→TAC) | hycF ← | formate hydrogenlyase complex iron‑sulfur protein |
RA | 2,841,044 | C→A | 100% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
RA | 2,846,112 | C→A | 100% | I206I (ATC→ATA) | hypD → | hydrogenase maturation protein |
RA | 2,848,002 | T→A | 100% | C102* (TGT→TGA) | fhlA → | formate hydrogenlyase transcriptional activator |
RA | 2,850,790 | C→A | 100% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,852,854 | G→T | 100% | P801P (CCG→CCT) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,869,780 | G→A | 100% | intergenic (‑92/‑160) | cysD ← / → iap | sulfate adenylyltransferase, subunit 2/aminopeptidase in alkaline phosphatase isozyme conversion |
RA | 2,870,278 | C→A | 100% | I113I (ATC→ATA) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
RA | 2,873,087 | G→T | 100% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,876,563 | C→A | 5.6% | R312L (CGA→CTA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,876,760 | C→T | 100% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,878,668 | G→T | 100% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,879,449 | G→T | 100% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,880,751 | C→A | 100% | noncoding (39/56 nt) | sokX → | sok‑related sRNA, function unknown |
RA | 2,881,078 | G→T | 43.7% | G198G (GGC→GGA) | cysH ← | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
RA | 2,882,392 | C→A | 15.2% | W356L (TGG→TTG) | cysI ← | sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
RA | 2,884,385 | G→T | 100% | V291V (GTC→GTA) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
RA | 2,888,584 | G→T | 100% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
RA | 2,889,129 | C→A | 100% | A4S (GCA→TCA) | ygcQ ← | putative flavoprotein |
RA | 2,893,446 | T→A | 100% | K63* (AAA→TAA) | ygcW ← | putative dehydrogenase |
RA | 2,894,334 | C→A | 5.0% | G128G (GGC→GGA) | yqcE → | MFS transporter family protein |
RA | 2,901,514 | C→A | 15.8% | P504P (CCG→CCT) | pyrG ← | CTP synthetase |
RA | 2,902,302 | C→A | 44.7% | D242Y (GAT→TAT) | pyrG ← | CTP synthetase |
RA | 2,907,165 | C→A | 12.4% | E399* (GAA→TAA) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
RA | 2,913,013 | C→A | 5.1% | D365Y (GAT→TAT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
RA | 2,913,019 | C→A | 100% | A363S (GCT→TCT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
RA | 2,915,998 | C→A | 100% | A116S (GCT→TCT) | yqcA ← | short‑chain flavodoxin, FMN‑binding |
RA | 2,916,339 | G→T | 11.3% | A2E (GCG→GAG) | yqcA ← | short‑chain flavodoxin, FMN‑binding |
RA | 2,918,415 | G→A | 100% | P75P (CCC→CCT) | syd ← | SecY‑interacting protein |
RA | 2,919,922 | G→T | 100% | D86Y (GAT→TAT) | ygdH → | UPF0717 family protein |
RA | 2,920,050 | C→A | 100% | I128I (ATC→ATA) | ygdH → | UPF0717 family protein |
RA | 2,921,101 | C→A | 100% | intergenic (+70/‑487) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
RA | 2,921,245 | G→T | 100% | intergenic (+214/‑343) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
RA | 2,931,717 | C→A | 100% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,932,835 | C→T | 100% | R37C (CGC→TGC) | fucR → | l‑fucose operon activator |
RA | 2,934,843 | G→T | 100% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,936,836 | C→A | 100% | A47A (GCC→GCA) | csdA → | cysteine sulfinate desulfinase |
RA | 2,939,832 | C→A | 26.3% | E236* (GAA→TAA) | mltA ← | membrane‑bound lytic murein transglycosylase A |
RA | 2,941,341 | G→A | 100% | L343L (CTC→CTT) | amiC ← | N‑acetylmuramoyl‑L‑alanine amidase |
RA | 2,945,306 | C→G | 100% | G172A (GGC→GCC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
RA | 2,950,431 | T→A | 22.0% | N605Y (AAT→TAT) | ptrA ← | protease III |
RA | 2,959,004 | G→A | 100% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
RA | 2,962,962 | T→A | 100% | intergenic (‑626/‑59) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,968,152 | G→T | 10.2% | R408S (CGC→AGC) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
RA | 2,974,073 | C→T | 100% | intergenic (‑79/+50) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
RA | 2,980,488 | C→A | 100% | intergenic (+53/‑407) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
RA | 2,983,568 | C→A | 23.0% | R51I (AGA→ATA) | yqeK ← | uncharacterized protein |
RA | 2,984,747 | G→T | 100% | D41Y (GAT→TAT) | ygeG → | SycD‑like chaperone family TPR‑repeat‑containing protein |
RA | 2,985,256 | G→T | 100% | intergenic (+138/‑197) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
RA | 2,985,472 | T→A | 15.1% | F7Y (TTC→TAC) | ygeH → | putative transcriptional regulator |
RA | 2,985,884 | C→T | 100% | I144I (ATC→ATT) | ygeH → | putative transcriptional regulator |
RA | 2,986,052 | G→T | 100% | L200F (TTG→TTT) | ygeH → | putative transcriptional regulator |
RA | 2,988,355 | C→A | 100% | pseudogene (97/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
RA | 2,988,554 | G→A | 100% | intergenic (‑103/+119) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,989,295 | C→A | 100% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,992,107 | C→A | 9.2% | pseudogene (81/1137 nt) | ygeQ ← | pseudogene |
RA | 2,993,211 | C→A | 100% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,699 | C→A | 100% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,999,827 | C→A | 100% | D69E (GAC→GAA) | ygeW → | putative carbamoyltransferase |
RA | 3,007,918 | G→T | 6.5% | R167S (CGC→AGC) | yqeC ← | putative selenium‑dependent hydroxylase accessory protein |
RA | 3,009,187 | G→T | 100% | intergenic (+90/‑232) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
RA | 3,017,285 | G→T | 100% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,018,544 | G→T | 100% | A279S (GCC→TCC) | xanQ → | xanthine permease |
RA | 3,022,562 | C→T | 100% | G577R (GGA→AGA) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,081 | A→C | 100% | V70V (GTT→GTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,983 | C→G | 100% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,030,181 | G→T | 100% | H429N (CAT→AAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,030,592 | T→A | 50.0% | N292Y (AAT→TAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,031,936 | G→T | 6.1% | V82V (GTC→GTA) | dsbC ← | protein disulfide isomerase II |
RA | 3,034,169 | T→A | 16.9% | Q5L (CAA→CTA) A87A (GCA→GCT) |
cptA ← sdhE ← |
toxin of CptAB toxin‑antitoxin pair flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
RA | 3,039,409 | T→G | 11.6% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,039,703 | C→A | 100% | A900S (GCG→TCG) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,041,321 | G→T | 100% | I360I (ATC→ATA) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,044,464 | G→A | 100% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,047,301 | G→T | 14.2% | T300N (ACC→AAC) | pepP ← | proline aminopeptidase P II |
RA | 3,049,220 | C→A | 100% | R84R (CGG→AGG) | zapA → | FtsZ stabilizer |
RA | 3,049,740 | C→A | 100% | L47L (CTC→CTA) | fau → | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,058,769 | C→T | 100% | I203I (ATC→ATT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,064,914 | G→T | 100% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
RA | 3,065,123 | C→T | 100% | G287S (GGT→AGT) | pgk ← | phosphoglycerate kinase |
RA | 3,068,690 | C→A | 10.8% | V284V (GTG→GTT) | yggF ← | fructose 1,6 bisphosphatase isozyme |
RA | 3,074,591 | G→T | 100% | A135E (GCG→GAG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
RA | 3,075,114 | C→A | 100% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 100% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,077,302 | C→A | 100% | D657Y (GAT→TAT) | speA ← | biosynthetic arginine decarboxylase, PLP‑binding |
RA | 3,080,618 | T→A | 100% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,080,755 | T→G | 22.4% | F231V (TTC→GTC) | metK → | S‑adenosylmethionine synthetase |
RA | 3,084,798 | C→A | 100% | L102L (CTC→CTA) | rsmE → | 16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
RA | 3,088,065 | C→A | 100% | V125V (GTG→GTT) | yggR ← | putative PilT family AAA+ ATPase |
RA | 3,097,262 | C→T | 100% | F297F (TTC→TTT) | mutY → | adenine DNA glycosylase |
RA | 3,106,685 | G→T | 100% | S51Y (TCT→TAT) | yghG ← | secretin (GspDbeta) OM localization lipoprotein pilotin |
RA | 3,110,213 | T→A | 100% | A753A (GCA→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,110,751 | C→A | 100% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 100% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,120,216 | C→A | 100% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,122,356 | G→T | 100% | L242F (TTG→TTT) | glcC → | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
RA | 3,122,778 | A→C | 100% | pseudogene (725/1101 nt) | yghO ← | pseudogene, DNA‑binding transcriptional regulator homology |
RA | 3,134,528 | C→A | 100% | D40Y (GAT→TAT) | hybD ← | maturation protease for hydrogenase 2 |
RA | 3,135,129 | T→A | 5.2% | K407I (AAA→ATA) | hybC ← | hydrogenase 2, large subunit |
RA | 3,135,838 | A→C | 6.5% | Y171D (TAC→GAC) | hybC ← | hydrogenase 2, large subunit |
RA | 3,136,423 | G→T | 7.7% | I367I (ATC→ATA) | hybB ← | putative hydrogenase 2 cytochrome b type component |
RA | 3,138,777 | C→A | 19.5% | G282C (GGT→TGT) | hybO ← | hydrogenase 2, small subunit |
RA | 3,142,668 | G→T | 100% | L55I (CTC→ATC) | yqhA ← | UPF0114 family putative inner membrane protein |
RA | 3,144,158 | C→A | 100% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
RA | 3,155,632 | G→T | 6.1% | R133S (CGC→AGC) | ftsP ← | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
RA | 3,164,230 | C→A | 100% | R130S (CGT→AGT) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
RA | 3,169,188 | C→A | 16.2% | G60C (GGT→TGT) | yqiA ← | acyl CoA esterase |
RA | 3,169,196 | T→A | 21.6% | E57V (GAA→GTA) | yqiA ← | acyl CoA esterase |
RA | 3,173,669 | G→T | 100% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,176,733 | G→T | 100% | intergenic (+51/+439) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,176,820 | G→T | 95.0% | intergenic (+138/+352) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,182,290 | A→T | 5.6% | pseudogene (1511/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,182,647 | G→T | 100% | pseudogene (1868/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,184,211 | C→A | 100% | S74Y (TCT→TAT) | yqiI → | fimbrial protein |
RA | 3,189,569 | C→A | 38.0% | D182Y (GAT→TAT) | hldE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
RA | 3,199,743 | C→A | 100% | intergenic (‑128/‑79) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
RA | 3,201,209 | C→A | 100% | F160L (TTC→TTA) | ttdB → | L‑tartrate dehydratase, beta subunit |
RA | 3,217,289 | A→T | 100% | H433L (CAC→CTC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,218,296 | G→T | 17.9% | D769Y (GAC→TAC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,224,927 | C→A | 100% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,230,857 | C→G | 100% | A63G (GCC→GGC) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,231,349 | A→C | 100% | Q227P (CAG→CCG) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,232,997 | T→A | 18.8% | intergenic (+93/‑306) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
RA | 3,234,522 | T→A | 15.1% | L407Q (CTG→CAG) | sstT → | sodium:serine/threonine symporter |
RA | 3,238,283 | C→A | 100% | intergenic (‑183/‑180) | uxaC ← / → exuT | uronate isomerase/hexuronate transporter |
RA | 3,243,768 | C→T | 100% | intergenic (+33/‑153) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
RA | 3,243,840 | T→G | 18.2% | intergenic (+105/‑81) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
RA | 3,245,848 | G→T | 100% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
RA | 3,246,619 | Δ1 bp | 33.6% | coding (350/357 nt) | yhaI → | DUF805 family inner membrane protein |
RA | 3,252,258 | C→A | 100% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,254,752 | C→A | 100% | V342V (GTG→GTT) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
RA | 3,258,871 | G→T | 100% | L173I (CTC→ATC) | tdcB ← | L‑threonine dehydratase, catabolic |
RA | 3,260,998 | G→T | 18.2% | intergenic (+41/‑215) | tdcR → / → yhaB | L‑threonine dehydratase operon activator protein/uncharacterized protein |
RA | 3,261,001 | G→A | 100% | intergenic (+44/‑212) | tdcR → / → yhaB | L‑threonine dehydratase operon activator protein/uncharacterized protein |
RA | 3,262,740 | T→A | 21.7% | Y323N (TAT→AAT) | yhaC → | pentapetide repeats‑related protein |
RA | 3,263,409 | C→T | 100% | intergenic (+448/+166) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,266,646 | C→A | 100% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
RA | 3,268,357 | C→A | 100% | intergenic (‑91/‑284) | garP ← / → garD | putative (D)‑galactarate transporter/(D)‑galactarate dehydrogenase |
RA | 3,271,128 | A→C | 100% | T145P (ACC→CCC) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
RA | 3,275,210 | A→G | 100% | intergenic (+226/‑125) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
RA | 3,277,142 | C→A | 15.1% | P214Q (CCG→CAG) | kbaY → | tagatose 6‑phosphate aldolase 1, kbaY subunit |
RA | 3,290,970 | A→T | 100% | R176R (CGT→CGA) | yraQ ← | putative inner membrane permease |
RA | 3,295,911 | C→A | 100% | Q22K (CAG→AAG) | yhbV → | U32 peptidase family protein |
RA | 3,296,612 | G→T | 100% | A255A (GCG→GCT) | yhbV → | U32 peptidase family protein |
RA | 3,299,240 | A→C | 100% | intergenic (‑64/+90) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
RA | 3,302,027 | G→T | 100% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,306,165 | C→A | 45.9% | V125F (GTT→TTT) | rbfA ← | 30s ribosome binding factor |
RA | 3,307,024 | C→A | 11.3% | G784C (GGT→TGT) | infB ← | translation initiation factor IF‑2 |
RA | 3,312,055 | C→A | 100% | G20G (GGC→GGA) | argG → | argininosuccinate synthetase |
RA | 3,314,870 | C→A | 100% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,317,805 | C→A | 49.5% | D156Y (GAT→TAT) | folP ← | 7,8‑dihydropteroate synthase |
RA | 3,332,963 | C→A | 100% | A154A (GCG→GCT) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
RA | 3,334,464 | C→A | 100% | S277R (AGC→AGA) | yrbG → | putative calcium/sodium:proton antiporter |
RA | 3,334,687 | G→T | 100% | A21A (GCG→GCT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
RA | 3,334,940 | T→G | 46.3% | S106A (TCT→GCT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
RA | 3,338,710 | G→T | 5.4% | W212L (TGG→TTG) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
RA | 3,340,038 | C→A | 16.7% | I34I (ATC→ATA) | ptsN → | sugar‑specific enzyme IIA component of PTS |
RA | 3,343,975 | C→A | 100% | noncoding (40/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
RA | 3,347,778 | G→A | 100% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,351,650 | G→T | 100% | E1189D (GAG→GAT) | gltB → | glutamate synthase, large subunit |
RA | 3,354,405 | C→T | 100% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,365,607 | G→T | 100% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,373,457 | C→A | 100% | intergenic (‑101/‑93) | yhcM ← / → yhcB | putative AFG1‑like family P‑loop ATPase/DUF1043 family inner membrane‑anchored protein |
RA | 3,373,985 | C→A | 100% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 100% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,396,082 | G→T | 100% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,403,534 | C→T | 100% | intergenic (+224/‑105) | prmA → / → dusB | methyltransferase for 50S ribosomal subunit protein L11/tRNA‑dihydrouridine synthase B |
RA | 3,404,059 | C→A | 100% | R141S (CGC→AGC) | dusB → | tRNA‑dihydrouridine synthase B |
RA | 3,407,007 | G→A | 100% | intergenic (‑183/‑216) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,407,969 | C→A | 100% | N249K (AAC→AAA) | acrE → | cytoplasmic membrane lipoprotein |
RA | 3,409,856 | A→C | 100% | T489P (ACC→CCC) | acrF → | multidrug efflux system protein |
RA | 3,411,250 | G→T | 100% | E953D (GAG→GAT) | acrF → | multidrug efflux system protein |
RA | 3,413,119 | G→T | 15.2% | pseudogene (654/960 nt) | yhdW → | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
RA | 3,415,702 | T→A | 13.5% | L340Q (CTG→CAG) | yhdY → | putative amino‑acid transporter subunit |
RA | 3,422,726 | G→T | 100% | V44V (GTG→GTT) | yrdA → | bacterial transferase hexapeptide domain protein |
RA | 3,424,363 | T→A | 100% | T138S (ACC→TCC) | tsaC ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine‑dependent ADP‑forming ATPase |
RA | 3,440,151 | G→T | 100% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 100% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,832 | T→C | 100% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
RA | 3,445,410 | C→A | 100% | R79L (CGT→CTT) | rplD ← | 50S ribosomal subunit protein L4 |
RA | 3,446,567 | T→A | 6.5% | A21A (GCA→GCT) | rpsJ ← | 30S ribosomal subunit protein S10 |
RA | 3,448,742 | C→A | 100% | E6* (GAA→TAA) | gspA ← | general secretory pathway component, cryptic |
RA | 3,455,867 | C→A | 100% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,455,930 | C→A | 100% | I76I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,459,603 | A→T | 40.3% | intergenic (+24/+5) | gspO → / ← bfr | bifunctional prepilin leader peptidase/ methylase/bacterioferritin, iron storage and detoxification protein |
RA | 3,466,043 | C→A | 12.7% | A277A (GCG→GCT) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
RA | 3,466,427 | C→A | 5.6% | A149A (GCG→GCT) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
RA | 3,470,272 | C→A | 100% | V169V (GTG→GTT) | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
RA | 3,471,705 | C→T | 100% | G51D (GGT→GAT) | slyD ← | FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
RA | 3,473,139 | G→T | 100% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,475,255 | C→A | 100% | S203Y (TCT→TAT) | yheS → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 3,479,769 | A→T | 100% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
RA | 3,486,738 | A→T | 14.6% | Q271L (CAA→CTA) | tsgA → | putative transporter |
RA | 3,487,342 | C→T | 100% | intergenic (+234/‑28) | tsgA → / → nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,488,966 | G→C | 100% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,489,397 | C→A | 100% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,493,210 | C→T | 15.9% | intergenic (+236/‑59) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
RA | 3,498,239 | A→C | 8.1% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,501,571 | C→A | 100% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
RA | 3,504,143 | G→T | 100% | R65S (CGT→AGT) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
RA | 3,507,749 | G→T | 100% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,509,102 | G→T | 100% | S57R (AGC→AGA) | dam ← | DNA adenine methyltransferase |
RA | 3,513,424 | A→T | 100% | V213V (GTT→GTA) | hofQ ← | DNA catabolic putative fimbrial transporter |
RA | 3,518,052 | C→A | 12.2% | P608Q (CCG→CAG) | mrcA → | fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase |
RA | 3,519,188 | C→A | 100% | L107L (CTG→CTT) | nudE ← | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,519,708 | T→G | 6.5% | intergenic (‑200/‑120) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,519,981 | G→T | 5.7% | A52S (GCC→TCC) | yrfF → | inner membrane protein |
RA | 3,525,215 | A→C | 8.7% | L195R (CTG→CGG) | yhgE ← | DUF4153 family putative inner membrane protein |
RA | 3,528,406 | G→T | 100% | I274I (ATC→ATA) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
RA | 3,535,370 | C→A | 100% | S535R (AGC→AGA) | feoB → | fused ferrous iron transporter, protein B: GTP‑binding protein/membrane protein |
RA | 3,543,190 | C→A | 18.1% | L80L (CTG→CTT) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
RA | 3,543,959 | G→T | 100% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
RA | 3,544,164 | G→T | 13.7% | R557S (CGT→AGT) | malP ← | maltodextrin phosphorylase |
RA | 3,545,077 | C→A | 20.4% | L252L (CTG→CTT) | malP ← | maltodextrin phosphorylase |
RA | 3,546,300 | G→T | 11.1% | intergenic (‑468/‑144) | malP ← / → malT | maltodextrin phosphorylase/mal regulon transcriptional activator |
RA | 3,557,688 | C→A | 16.8% | D752Y (GAT→TAT) | glgP ← | glycogen phosphorylase |
RA | 3,558,115 | C→A | 5.9% | A609A (GCG→GCT) | glgP ← | glycogen phosphorylase |
RA | 3,561,574 | C→A | 100% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,567,059 | C→A | 100% | intergenic (‑197/+76) | glgB ← / ← asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
RA | 3,571,153 | C→A | 100% | E312* (GAA→TAA) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,575,032 | C→A | 41.8% | intergenic (+46/‑191) | yhhY → / → yhhZ | putative acetyltransferase/putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
RA | 3,577,827 | A→G | 26.1% | intergenic (+158/‑292) | yrhA → / → yrhB | pseudogene, interrupted by IS1E/stable heat shock chaperone |
RA | 3,582,807 | G→T | 100% | P194Q (CCG→CAG) | ugpE ← | glycerol‑3‑phosphate transporter subunit |
RA | 3,590,636 | G→T | 100% | Y95* (TAC→TAA) | livK ← | leucine transporter subunit |
RA | 3,590,728 | C→A | 6.0% | D65Y (GAT→TAT) | livK ← | leucine transporter subunit |
RA | 3,590,906 | C→A | 100% | A5A (GCG→GCT) | livK ← | leucine transporter subunit |
RA | 3,591,218 | G→A | 15.5% | intergenic (‑298/‑126) | livK ← / → panM | leucine transporter subunit/PanD autocleavage accelerator, panothenate synthesis |
RA | 3,591,957 | T→G | 100% | V354V (GTA→GTC) | livJ ← | leucine/isoleucine/valine transporter subunit |
RA | 3,594,268 | C→T | 100% | intergenic (‑125/+120) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
RA | 3,594,451 | C→A | 19.0% | M332I (ATG→ATT) | ftsX ← | inner membrane putative ABC superfamily transporter permease |
RA | 3,596,266 | C→A | 100% | T446T (ACG→ACT) | ftsY ← | Signal Recognition Particle (SRP) receptor |
RA | 3,598,440 | C→A | 100% | N34K (AAC→AAA) | yhhL → | DUF1145 family protein |
RA | 3,604,608 | C→A | 22.9% | A162A (GCG→GCT) | yhhS ← | putative arabinose efflux transporter |
RA | 3,607,110 | C→A | 100% | I28I (ATC→ATA) | nikA → | nickel‑binding, heme‑binding periplasmic protein |
RA | 3,612,284 | G→T | 100% | D113Y (GAT→TAT) | nikR → | transcriptional repressor, Ni‑binding |
RA | 3,616,714 | T→G | 15.8% | I1388R (ATA→AGA) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
RA | 3,618,536 | C→A | 100% | R267R (CGG→AGG) | yhhI → | putative transposase |
RA | 3,622,058 | C→A | 100% | D281Y (GAT→TAT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
RA | 3,629,424 | T→A | 100% | intergenic (+171/+144) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
RA | 3,634,060 | A→G | 14.4% | intergenic (+155/‑162) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
RA | 3,638,641 | C→A | 100% | intergenic (‑99/‑104) | prlC ← / → rlmJ | oligopeptidase A/23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,639,239 | G→T | 100% | P165P (CCG→CCT) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,644,531 | G→A | 100% | intergenic (+509/‑120) | arsC → / → yhiS | arsenate reductase/pseudogene |
RA | 3,646,984 | G→T | 100% | pseudogene (394/483 nt) | yhiS → | pseudogene |
RA | 3,649,797 | C→A | 100% | E102* (GAA→TAA) | hdeA ← | stress response protein acid‑resistance protein |
RA | 3,652,308 | G→T | 7.4% | intergenic (+55/‑284) | gadE → / → mdtE | gad regulon transcriptional activator/anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,653,112 | C→A | 5.4% | S174* (TCG→TAG) | mdtE → | anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,657,375 | G→A | 100% | P202S (CCT→TCT) | gadW ← | transcriptional activator of gadA and gadBC; repressor of gadX |
RA | 3,661,015 | C→A | 8.4% | intergenic (‑75/+136) | gadA ← / ← yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
RA | 3,661,610 | A→T | 100% | F313L (TTT→TTA) | yhjA ← | putative cytochrome C peroxidase |
RA | 3,662,660 | T→C | 100% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,667,555 | C→A | 47.4% | I278I (ATC→ATA) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
RA | 3,667,959 | C→A | 100% | intergenic (+224/‑187) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/MFS superfamily sugar transport 1 family protein |
RA | 3,679,301 | T→G | 100% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 100% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,680,910 | G→T | 100% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
RA | 3,686,345 | C→A | 100% | R751L (CGC→CTC) | bcsA ← | cellulose synthase, catalytic subunit |
RA | 3,692,994 | T→A | 100% | F474Y (TTC→TAC) | bcsG → | DUF3260 family inner membrane protein associated with cellulose production |
RA | 3,693,083 | G→T | 44.6% | V504F (GTT→TTT) | bcsG → | DUF3260 family inner membrane protein associated with cellulose production |
RA | 3,696,327 | A→T | 16.6% | T294T (ACT→ACA) | dppD ← | dipeptide/heme transporter |
RA | 3,698,119 | C→A | 100% | M1M (ATG→ATT) † | dppC ← | dipeptide/heme transporter |
RA | 3,698,875 | G→T | 100% | F92L (TTC→TTA) | dppB ← | dipeptide/heme transporter |
RA | 3,717,788 | C→A | 100% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
RA | 3,727,580 | C→A | 100% | A167A (GCC→GCA) | xylH → | D‑xylose ABC transporter permease subunit |
RA | 3,727,972 | T→A | 23.3% | L298* (TTA→TAA) | xylH → | D‑xylose ABC transporter permease subunit |
RA | 3,729,221 | C→A | 20.1% | R295S (CGT→AGT) | xylR → | xylose divergent operon transcriptional activator |
RA | 3,732,549 | G→T | 20.8% | D565Y (GAT→TAT) | malS → | alpha‑amylase |
RA | 3,736,722 | C→A | 100% | G210G (GGC→GGA) | yiaK → | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
RA | 3,738,088 | T→A | 19.2% | F134Y (TTC→TAC) | yiaM → | 2,3‑diketo‑L‑gulonate TRAP transporter small permease protein |
RA | 3,738,431 | C→A | 100% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,751,135 | G→T | 41.2% | S18* (TCA→TAA) | yiaY ← | putative Fe‑containing alcohol dehydrogenase, Pfam00465 family |
RA | 3,755,723 | G→T | 63.9% | E61* (GAA→TAA) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
RA | 3,765,441 | G→T | 6.5% | intergenic (‑337/‑200) | yibI ← / → mtlA | DUF3302 family inner membrane protein/fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,767,000 | G→T | 100% | D454Y (GAC→TAC) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,767,410 | G→T | 100% | V590V (GTG→GTT) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,772,732 | G→T | 24.4% | A107S (GCC→TCC) | lldR → | dual role activator/repressor for lldPRD operon |
RA | 3,774,728 | C→A | 5.3% | H52N (CAC→AAC) | trmL → | tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,776,199 | T→G | 6.6% | S275R (AGC→CGC) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
RA | 3,782,439 | G→T | 20.4% | R335S (CGC→AGC) | waaH ← | LPS(HepIII)‑glucuronic acid glycosyltransferase |
RA | 3,785,915 | G→T | 100% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
RA | 3,789,381 | C→A | 100% | L15I (CTC→ATC) | waaC → | ADP‑heptose:LPS heptosyl transferase I |
RA | 3,796,526 | A→T | 17.4% | I324I (ATT→ATA) | waaB ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
RA | 3,798,582 | C→A | 12.9% | Q243H (CAG→CAT) | waaP ← | kinase that phosphorylates core heptose of lipopolysaccharide |
RA | 3,810,195 | C→A | 100% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,814,866 | A→C | 6.8% | T27P (ACC→CCC) | gmk → | guanylate kinase |
RA | 3,816,601 | A→T | 100% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 100% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,822,339 | A→C | 8.9% | Q12P (CAA→CCA) ‡ | xanP → | xanthine permease |
RA | 3,822,340 | A→C | 13.4% | Q12H (CAA→CAC) ‡ | xanP → | xanthine permease |
RA | 3,825,402 | C→A | 21.1% | P529Q (CCG→CAG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
RA | 3,825,702 | C→A | 100% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,828,206 | T→A | 100% | S362C (AGT→TGT) | yicJ ← | putative transporter |
RA | 3,830,197 | C→A | 100% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,311 | G→T | 100% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,819 | T→G | 100% | F169L (TTT→TTG) | setC → | putative arabinose efflux transporter |
RA | 3,832,308 | G→C | 22.3% | S234T (AGT→ACT) | yicL → | EamA family inner membrane putative transporter |
RA | 3,834,798 | A→T | 5.3% | L101Q (CTG→CAG) | nepI ← | putative transporter |
RA | 3,837,532 | C→A | 50.6% | P70Q (CCG→CAG) | ade → | cryptic adenine deaminase |
RA | 3,839,798 | C→A | 100% | D244Y (GAT→TAT) | uhpT ← | hexose phosphate transporter |
JC | 3,841,409 | +CAACCAG | 100% | coding (576/1320 nt) | uhpC ← | membrane protein regulates uhpT expression |
RA | 3,844,347 | C→A | 12.8% | V36F (GTT→TTT) | ilvN ← | acetolactate synthase 1 small subunit |
RA | 3,850,865 | C→A | 7.3% | A300A (GCG→GCT) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,851,695 | C→A | 8.7% | G24C (GGT→TGT) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,860,327 | C→A | 100% | intergenic (‑70/+42) | ibpB ← / ← ibpA | heat shock chaperone/heat shock chaperone |
RA | 3,860,653 | C→A | 100% | E44* (GAA→TAA) | ibpA ← | heat shock chaperone |
RA | 3,861,553 | C→A | 100% | G373C (GGC→TGC) | yidR ← | DUF3748 family protein |
RA | 3,863,438 | G→T | 100% | M234I (ATG→ATT) | cbrA → | colicin M resistance protein; FAD‑binding protein, putative oxidoreductase |
RA | 3,865,120 | C→A | 100% | intergenic (‑30/+90) | dgoT ← / ← dgoD | D‑galactonate transporter/galactonate dehydratase |
RA | 3,865,863 | T→A | 100% | T166S (ACC→TCC) | dgoD ← | galactonate dehydratase |
RA | 3,872,006 | T→A | 100% | S492C (AGC→TGC) | gyrB ← | DNA gyrase, subunit B |
RA | 3,875,588 | T→A | 5.1% | N32Y (AAT→TAT) | dnaN ← | DNA polymerase III, beta subunit |
RA | 3,880,731 | G→T | 100% | D182Y (GAT→TAT) | mnmE → | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
RA | 3,888,274 | C→A | 54.9% | P88Q (CCG→CAG) | chrR → | chromate reductase, Class I, flavoprotein |
RA | 3,890,151 | G→T | 11.3% | A6A (GCG→GCT) | yieH → | phosphoenolpyruvate and 6‑phosphogluconate phosphatase |
RA | 3,890,960 | T→A | 100% | F32Y (TTC→TAC) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
RA | 3,892,304 | C→A | 100% | P150P (CCG→CCT) | yieK ← | putative 6‑phosphogluconolactonase |
RA | 3,901,415 | C→A | 100% | P104P (CCG→CCT) | pstB ← | phosphate transporter subunit |
RA | 3,901,859 | C→A | 19.9% | intergenic (‑133/+50) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
RA | 3,904,553 | T→A | 100% | P111P (CCA→CCT) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
RA | 3,906,384 | G→T | 100% | I215I (ATC→ATA) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,910,416 | C→A | 100% | R107L (CGT→CTT) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,448 | G→T | 100% | V96V (GTC→GTA) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,894 | C→A | 100% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,916,830 | C→A | 100% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,917,554 | C→A | 100% | L480L (CTG→CTT) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
RA | 3,923,028 | C→A | 100% | D476Y (GAC→TAC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,925,897 | G→T | 6.8% | D408Y (GAT→TAT) | kup → | potassium transporter |
RA | 3,926,831 | G→T | 100% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
RA | 3,927,972 | G→T | 100% | E279* (GAA→TAA) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 3,931,021 | C→A | 100% | A123E (GCG→GAG) | rbsK → | ribokinase |
RA | 3,934,426 | G→T | 17.5% | Q88K (CAG→AAG) | yieP ← | putative transcriptional regulator |
RA | 3,935,100 | G→T | 100% | intergenic (‑413/‑68) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
RA | 3,936,831 | C→A | 100% | noncoding (37/76 nt) | gltU → | tRNA‑Glu |
RA | 3,945,181 | G→T | 100% | pseudogene (280/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
RA | 3,958,750 | T→A | 15.9% | K81* (AAG→TAG) | rhlB ← | ATP‑dependent RNA helicase |
RA | 3,959,351 | G→T | 100% | P77P (CCG→CCT) | trxA → | thioredoxin 1 |
RA | 3,960,036 | G→A | 100% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,966,854 | C→A | 100% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,967,474 | G→T | 100% | A169A (GCG→GCT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,969,710 | G→T | 100% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
RA | 3,972,296 | G→T | 100% | E112D (GAG→GAT) | wzyE → | putative ECA polysaccharide chain elongation protein |
RA | 3,983,298 | G→T | 24.0% | R277S (CGC→AGC) | hemC ← | hydroxymethylbilane synthase |
RA | 3,988,075 | T→A | 100% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
RA | 3,994,076 | A→T | 100% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
RA | 3,994,247 | A→T | 100% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,996,346 | T→A | 100% | I70F (ATC→TTC) | yigG ← | PRK11371 family inner membrane protein |
RA | 4,004,199 | G→T | 6.7% | D214Y (GAC→TAC) | yigL → | pyridoxal phosphate phosphatase |
RA | 4,009,705 | G→A | 100% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,020,049 | C→G | 18.1% | P55A (CCG→GCG) | fre → | NAD(P)H‑flavin reductase |
RA | 4,024,827 | G→T | 100% | D103Y (GAT→TAT) | pepQ → | proline dipeptidase |
RA | 4,034,118 | G→T | 21.8% | intergenic (+122/+148) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
RA | 4,035,421 | G→T | 100% | intergenic (‑62/‑8) | mobA ← / → yihD | molybdopterin‑guanine dinucleotide synthase/DUF1040 protein YihD |
RA | 4,037,484 | T→A | 100% | intergenic (+80/‑75) | dsbA → / → yihF | periplasmic protein disulfide isomerase I/DUF945 family protein |
RA | 4,044,791 | C→A | 6.0% | R29S (CGT→AGT) | yihI → | activator of Der GTPase |
RA | 4,045,302 | G→T | 100% | intergenic (+86/‑103) | yihI → / → hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,045,386 | G→T | 22.1% | intergenic (+170/‑19) | yihI → / → hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,046,172 | A→T | 100% | K256N (AAA→AAT) | hemN → | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,053,774 | G→T | 19.0% | intergenic (+184/‑33) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
RA | 4,055,671 | A→T | 7.1% | K22I (AAA→ATA) | yihN → | MFS transporter family protein |
RA | 4,056,018 | T→A | 100% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,058,809 | G→T | 94.9% | I106I (ATC→ATA) | yihO ← | putative transporter |
RA | 4,062,424 | G→T | 100% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,066,133 | T→G | 100% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 100% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,070,543 | G→T | 100% | D57Y (GAT→TAT) | dtd → | D‑tyr‑tRNA(Tyr) deacylase |
RA | 4,073,741 | A→T | 13.8% | L283Q (CTG→CAG) | fdhE ← | formate dehydrogenase formation protein |
RA | 4,074,579 | G→T | 100% | R4S (CGC→AGC) | fdhE ← | formate dehydrogenase formation protein |
RA | 4,075,234 | C→A | 100% | D296Y (GAC→TAC) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
RA | 4,076,055 | T→G | 13.8% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
RA | 4,078,009 | C→A | 11.6% | E392* (GAA→TAA) | fdoG ← | formate dehydrogenase‑O, large subunit |
RA | 4,088,850 | C→A | 100% | R93S (CGT→AGT) | rhaR → | transcriptional activator of rhaSR |
RA | 4,094,362 | C→A | 100% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,097,822 | G→T | 100% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,108,175 | C→T | 100% | intergenic (‑157/‑268) | glpF ← / → zapB | glycerol facilitator/FtsZ stabilizer; septal ring assembly factor, stimulates cell division |
RA | 4,117,657 | G→T | 18.5% | R56S (CGC→AGC) | yiiX ← | putative lipid binding hydrolase, DUF830 family protein |
RA | 4,122,248 | A→T | 100% | intergenic (+53/‑296) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
RA | 4,124,384 | C→A | 100% | H208N (CAT→AAT) | katG → | catalase‑peroxidase HPI, heme b‑containing |
RA | 4,125,407 | C→A | 100% | H549N (CAT→AAT) | katG → | catalase‑peroxidase HPI, heme b‑containing |
RA | 4,127,022 | T→G | 100% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,128,037 | G→T | 28.5% | L309L (CTC→CTA) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
RA | 4,135,168 | G→T | 100% | V416L (GTA→TTA) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
RA | 4,143,375 | A→G | 7.7% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,150,054 | G→T | 100% | S222Y (TCT→TAT) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,152,819 | T→G | 6.0% | K127T (AAG→ACG) | trmA ← | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
RA | 4,154,402 | A→T | 40.9% | E279V (GAA→GTA) | btuB → | vitamin B12/cobalamin outer membrane transporter |
RA | 4,158,143 | A→T | 41.3% | intergenic (+15/‑157) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
RA | 4,158,149 | T→C | 40.6% | intergenic (+21/‑151) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
RA | 4,158,400 | G→A | 14.7% | intergenic (+25/‑169) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,158,403 | G→T | 14.7% | intergenic (+28/‑166) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,158,404 | A→G | 14.6% | intergenic (+29/‑165) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,163,117 | T→A | 49.3% | I36I (ATT→ATA) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
RA | 4,172,507 | C→A | 100% | I445I (ATC→ATA) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,145 | A→T | 100% | Q658L (CAG→CTG) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,179 | G→T | 100% | P669P (CCG→CCT) | rpoB → | RNA polymerase, beta subunit |
RA | 4,176,823 | G→T | 100% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,178,969 | G→T | 100% | R1231L (CGT→CTT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,184,471 | A→T | 42.1% | I519I (ATT→ATA) | thiC ← | phosphomethylpyrimidine synthase |
RA | 4,190,061 | T→A | 60.1% | intergenic (+39/‑148) | yjaG → / → hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
RA | 4,193,578 | G→T | 100% | D111Y (GAT→TAT) | zraR → | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
RA | 4,207,552 | G→T | 100% | M172I (ATG→ATT) | aceA → | isocitrate lyase |
RA | 4,210,753 | C→A | 100% | E555* (GAA→TAA) | arpA ← | ankyrin repeat protein |
RA | 4,211,576 | G→T | 100% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
RA | 4,211,803 | G→A | 100% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,212,209 | G→T | 5.7% | V69V (GTC→GTA) | arpA ← | ankyrin repeat protein |
RA | 4,214,563 | A→T | 100% | T270S (ACC→TCC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,214,809 | G→T | 100% | E352* (GAA→TAA) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,219,790 | A→T | 41.9% | L94Q (CTG→CAG) | pepE ← | (alpha)‑aspartyl dipeptidase |
RA | 4,220,948 | G→T | 7.6% | D223Y (GAT→TAT) | rluF → | 23S rRNA pseudouridine(2604) synthase |
RA | 4,221,214 | C→A | 44.1% | intergenic (+60/+73) | rluF → / ← yjbD | 23S rRNA pseudouridine(2604) synthase/DUF3811 family protein |
RA | 4,223,294 | G→T | 6.2% | intergenic (‑133/‑392) | lysC ← / → pgi | lysine‑sensitive aspartokinase 3/glucosephosphate isomerase |
RA | 4,223,639 | T→G | 5.2% | intergenic (‑478/‑47) | lysC ← / → pgi | lysine‑sensitive aspartokinase 3/glucosephosphate isomerase |
RA | 4,223,839 | G→A | 18.5% | D52N (GAT→AAT) | pgi → | glucosephosphate isomerase |
RA | 4,224,391 | G→T | 47.2% | V236F (GTT→TTT) | pgi → | glucosephosphate isomerase |
RA | 4,224,513 | G→T | 5.6% | A276A (GCG→GCT) | pgi → | glucosephosphate isomerase |
RA | 4,224,685 | G→T | 25.5% | A334S (GCG→TCG) | pgi → | glucosephosphate isomerase |
RA | 4,225,741 | G→T | 100% | intergenic (+406/‑93) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
RA | 4,225,841 | A→C | 100% | K3T (AAA→ACA) | yjbE → | extracellular polysaccharide production threonine‑rich protein |
RA | 4,230,913 | A→T | 100% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,235,869 | G→T | 100% | A160E (GCG→GAG) | malE ← | maltose transporter subunit |
RA | 4,235,916 | G→T | 100% | N144K (AAC→AAA) | malE ← | maltose transporter subunit |
RA | 4,236,666 | C→A | 100% | intergenic (‑319/‑46) | malE ← / → malK | maltose transporter subunit/fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
RA | 4,242,509 | C→T | 100% | L26F (CTC→TTC) | ubiC → | chorismate‑‑pyruvate lyase |
RA | 4,245,537 | G→T | 100% | N286K (AAC→AAA) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
RA | 4,248,129 | T→G | 15.2% | W154G (TGG→GGG) | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
RA | 4,249,117 | G→T | 100% | intergenic (+68/‑48) | dinF → / → yjbJ | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein/stress‑induced protein, UPF0337 family |
RA | 4,255,009 | A→T | 100% | V256V (GTA→GTT) | dnaB → | replicative DNA helicase |
RA | 4,258,903 | G→T | 6.8% | S13Y (TCT→TAT) | yjbS ← | uncharacterized protein |
RA | 4,265,064 | C→A | 100% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,265,089 | T→A | 100% | intergenic (‑120/‑310) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,266,208 | T→A | 19.5% | S270S (TCT→TCA) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,266,318 | G→T | 100% | R307L (CGT→CTT) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,269,251 | A→T | 18.1% | Q282L (CAG→CTG) | yjcD → | inner membrane putative guanine permease |
RA | 4,271,182 | C→A | 15.2% | V425V (GTC→GTA) | yjcE → | putative cation/proton antiporter |
RA | 4,272,059 | T→A | 19.5% | T315T (ACA→ACT) | yjcF ← | pentapeptide repeats protein |
RA | 4,272,352 | T→C | 41.3% | T218A (ACT→GCT) | yjcF ← | pentapeptide repeats protein |
RA | 4,274,926 | A→C | 100% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,275,142 | C→A | 100% | intergenic (‑1/+199) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
RA | 4,275,862 | C→A | 100% | D480Y (GAT→TAT) | acs ← | acetyl‑CoA synthetase |
RA | 4,279,816 | G→T | 55.5% | A27A (GCG→GCT) | nrfC → | formate‑dependent nitrite reductase, 4Fe4S subunit |
RA | 4,288,086 | G→T | 100% | F366L (TTC→TTA) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
RA | 4,290,080 | G→T | 100% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,297,485 | G→C | 100% | G44G (GGC→GGG) | alsK ← | D‑allose kinase |
RA | 4,297,846 | C→A | 100% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,303,614 | T→A | 100% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,310,259 | C→A | 8.2% | A74A (GCG→GCT) | phnI ← | ribophosphonate triphosphate synthase complex putative catalytic subunit |
RA | 4,318,517 | A→T | 100% | T522T (ACA→ACT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,321,863 | A→T | 21.4% | intergenic (+42/‑70) | proP → / → pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
RA | 4,329,774 | C→A | 100% | D189Y (GAC→TAC) | adiA ← | arginine decarboxylase |
RA | 4,330,426 | Δ1 bp | 100% | intergenic (‑88/+111) | adiA ← / ← melR | arginine decarboxylase/melibiose operon transcriptional regulator; autoregulator |
RA | 4,337,551 | C→A | 19.4% | V337V (GTG→GTT) | dcuB ← | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
RA | 4,341,023 | A→T | 100% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
RA | 4,350,223 | G→A | 100% | A510V (GCT→GTT) | cadC ← | cadBA operon transcriptional activator |
RA | 4,350,570 | T→A | 11.6% | E394D (GAA→GAT) | cadC ← | cadBA operon transcriptional activator |
RA | 4,351,573 | C→A | 16.2% | R60I (AGA→ATA) | cadC ← | cadBA operon transcriptional activator |
RA | 4,356,198 | A→T | 22.8% | S131S (TCT→TCA) | dcuA ← | C4‑dicarboxylate antiporter |
RA | 4,358,390 | A→C | 100% | intergenic (‑246/‑91) | aspA ← / → fxsA | aspartate ammonia‑lyase/suppressor of F exclusion of phage T7 |
RA | 4,358,920 | G→T | 100% | R147L (CGC→CTC) | fxsA → | suppressor of F exclusion of phage T7 |
RA | 4,363,573 | A→T | 5.1% | L160Q (CTG→CAG) | yjeJ ← | uncharacterized protein |
RA | 4,366,322 | A→C | 100% | intergenic (+63/‑48) | ecnA → / → ecnB | entericidin A membrane lipoprotein, antidote entericidin B/entericidin B membrane lipoprotein |
RA | 4,376,178 | C→A | 100% | E1004* (GAA→TAA) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,378,778 | G→T | 100% | S137* (TCG→TAG) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,381,504 | T→A | 100% | I28I (ATT→ATA) | orn → | oligoribonuclease |
RA | 4,382,218 | C→A | 93.0% | noncoding (42/76 nt) | glyV → | tRNA‑Gly |
RA | 4,388,439 | T→A | 52.8% | V404E (GTG→GAG) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,388,902 | G→T | 100% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,394,875 | G→T | 100% | A124A (GCG→GCT) | purA → | adenylosuccinate synthetase |
RA | 4,396,598 | A→T | 100% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,402,850 | G→T | 100% | L2L (CTG→CTT) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,404,169 | G→T | 100% | A26A (GCG→GCT) | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
RA | 4,405,730 | G→T | 100% | intergenic (+13/+104) | aidB → / ← yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein |
RA | 4,406,553 | C→A | 100% | R12L (CGG→CTG) | bsmA ← | bioflm peroxide resistance protein |
RA | 4,410,964 | A→C | 100% | I390L (ATC→CTC) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
RA | 4,412,786 | G→T | 100% | E42* (GAA→TAA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
RA | 4,417,122 | G→T | 100% | R40S (CGT→AGT) | yjfZ ← | uncharacterized protein |
RA | 4,417,551 | A→C | 100% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,427,647 | G→A | 100% | D42N (GAT→AAT) | ytfI → | uncharacterized protein |
RA | 4,428,092 | G→T | 100% | G190V (GGA→GTA) | ytfI → | uncharacterized protein |
RA | 4,432,031 | G→A | 100% | intergenic (‑38/‑168) | msrA ← / → tamA | methionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit |
RA | 4,432,180 | A→T | 7.8% | intergenic (‑187/‑19) | msrA ← / → tamA | methionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit |
RA | 4,434,260 | C→A | 100% | P111H (CCT→CAT) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
RA | 4,440,910 | C→A | 11.8% | T12T (ACC→ACA) | ytfR → | putative ABC superfamily sugar transporter ATP‑binding subunit |
RA | 4,445,719 | A→T | 100% | T40S (ACC→TCC) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
RA | 4,456,233 | G→T | 100% | I277I (ATC→ATA) | treR ← | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
RA | 4,457,499 | C→A | 100% | R20S (CGT→AGT) | mgtA → | magnesium transporter |
RA | 4,458,254 | T→A | 100% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 100% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,458,948 | G→T | 100% | D503Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,465,936 | T→A | 100% | L228* (TTA→TAA) | yjgL → | uncharacterized protein |
RA | 4,467,421 | C→A | 17.6% | S236S (TCG→TCT) | argI ← | ornithine carbamoyltransferase 1 |
RA | 4,468,165 | A→G | 100% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
RA | 4,469,550 | G→A | 100% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 100% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,873 | G→T | 100% | R928S (CGT→AGT) | valS ← | valyl‑tRNA synthetase |
RA | 4,471,930 | T→A | 100% | P575P (CCA→CCT) | valS ← | valyl‑tRNA synthetase |
RA | 4,472,936 | G→T | 6.5% | P240Q (CCG→CAG) | valS ← | valyl‑tRNA synthetase |
RA | 4,480,139 | G→T | 100% | A273E (GCG→GAG) | idnR ← | transcriptional repressor, 5‑gluconate‑binding |
RA | 4,481,076 | T→G | 16.8% | I423L (ATT→CTT) | idnT ← | L‑idonate and D‑gluconate transporter |
RA | 4,493,435 | T→C | 100% | intergenic (‑187/‑440) | insG ← / → yjhB | IS4 transposase/putative transporter |
RA | 4,493,437 | A→T | 20.6% | intergenic (‑189/‑438) | insG ← / → yjhB | IS4 transposase/putative transporter |
RA | 4,494,721 | G→A | 100% | A283T (GCC→ACC) | yjhB → | putative transporter |
RA | 4,495,859 | T→G | 100% | D252E (GAT→GAG) | yjhC → | putative oxidoreductase |
RA | 4,505,141 | G→T | 100% | R452S (CGT→AGT) | fecA ← | ferric citrate outer membrane transporter |
RA | 4,512,693 | T→A | 100% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,520,701 | G→T | 100% | G256G (GGC→GGA) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
RA | 4,523,001 | T→A | 94.3% | intergenic (‑1/+55) | yjhP ← / ← yjhQ | putative methyltransferase/putative acetyltransferase |
RA | 4,525,234 | G→A | 100% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,531,143 | A→T | 100% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,532,739 | A→G | 5.8% | intergenic (+289/‑193) | fimE → / → fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
RA | 4,533,538 | A→T | 19.7% | intergenic (+58/‑7) | fimA → / → fimI | major type 1 subunit fimbrin (pilin)/fimbrial protein involved in type 1 pilus biosynthesis |
RA | 4,541,306 | C→T | 16.9% | intergenic (‑193/‑147) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
RA | 4,541,449 | A→T | 100% | intergenic (‑336/‑4) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
RA | 4,545,107 | G→T | 20.4% | D239Y (GAT→TAT) | uxuR → | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
RA | 4,545,608 | C→A | 100% | R177I (AGA→ATA) | yjiC ← | uncharacterized protein |
RA | 4,546,672 | G→T | 19.5% | intergenic (‑535/‑138) | yjiC ← / → iraD | uncharacterized protein/RpoS stabilzer after DNA damage, anti‑RssB factor |
RA | 4,547,818 | C→A | 100% | D97Y (GAT→TAT) | hypT ← | hypochlorite‑responsive transcription factor |
RA | 4,548,084 | A→T | 53.9% | L8* (TTG→TAG) | hypT ← | hypochlorite‑responsive transcription factor |
RA | 4,555,156 | G→T | 100% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,562,043 | C→A | 100% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,567,278 | G→T | 100% | I166I (ATC→ATA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
RA | 4,571,233 | G→A | 100% | S16F (TCT→TTT) | hsdS ← | specificity determinant for hsdM and hsdR |
RA | 4,572,520 | A→T | 100% | Y116N (TAC→AAC) | hsdM ← | DNA methyltransferase M |
RA | 4,584,255 | A→C | 100% | L95L (CTT→CTG) | yjjL ← | L‑galactonate transporter |
RA | 4,584,381 | G→T | 100% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,584,756 | A→T | 100% | *305K (TAA→AAA) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,584,775 | C→A | 100% | E298D (GAG→GAT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,585,338 | A→T | 100% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,588,180 | G→T | 100% | S360* (TCA→TAA) | opgB ← | phosphoglycerol transferases I and II |
RA | 4,589,130 | G→T | 100% | I43I (ATC→ATA) | opgB ← | phosphoglycerol transferases I and II |
RA | 4,591,139 | C→A | 100% | D66Y (GAT→TAT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |
RA | 4,596,243 | T→A | 100% | intergenic (‑25/+243) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
RA | 4,600,972 | G→T | 100% | intergenic (+152/‑241) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
RA | 4,603,125 | A→C | 9.5% | T300P (ACG→CCG) | yjjU → | putative patatin‑like family phospholipase |
RA | 4,607,052 | T→A | 22.7% | intergenic (‑170/‑88) | yjjI ← / → deoC | DUF3029 family protein, putative glycine radical enzyme/2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
RA | 4,615,947 | G→T | 100% | E73D (GAG→GAT) | radA → | DNA repair protein |
RA | 4,617,341 | C→A | 100% | F70L (TTC→TTA) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
RA | 4,625,288 | T→C | 100% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
RA | 4,630,770 | G→T | 100% | T4T (ACG→ACT) | yjtD → | putative methyltransferase |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373845 | 375074 | 1230 | 117 [114] | [113] 118 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 1191695 | 1206909 | 15215 | 116 [112] | [111] 117 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfI,ymfJ,cohE,croE,ymfL,ymfM,oweE,aaaE,ymfR,beeE,jayE,ymfQ,stfP,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
* | * | ÷ | CP009273 | 4100621 | 4101510 | 890 | 117 [114] | [115] 117 | tpiA | tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 105 (0.480) | 117 (0.540) | 77/274 | NT | 52.7% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 5344 (26.220) +TTAATTAA |
192/258 | NT | 96.9% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 182 (0.840) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 212 (0.980) | 5077 (35.420) +46 bp |
171/182 | NT | 97.5% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 181 (0.840) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 241 (1.110) | 125/274 | NT | 100% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 0 (0.000) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 268 (1.240) | 135/274 | NT | 100% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 0 (0.000) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 1635219 = | 0 (0.000) | 269 (1.260) | 129/270 | NT | 100% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 0 (0.000) | 224 (1.030) | 121/274 | NT | 100% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 3180783 | NA (NA) | 235 (1.100) | 122/270 | NT | 96.8% | pseudogene (4/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | = 3833569 | 8 (0.040) | intergenic (‑216/‑6) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein | |||||
* | ? | CP009273 | 3744959 = | 201 (0.930) | 262 (1.210) | 131/274 | NT | 58.5% | coding (270/741 nt) | yiaT | putative outer membrane protein |
? | CP009273 | = 3752673 | 170 (0.780) | coding (549/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
* | ? | CP009273 | 3833562 = | 8 (0.040) | 228 (1.060) | 122/272 | NT | 96.6% | intergenic (‑209/‑13) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |