breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 42 | G→T | 5.6% | intergenic (–/‑148) | – / → thrL | –/thr operon leader peptide |
RA | 5,144 | G→A | 100% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 7,522 | G→T | 100% | F146L (TTC→TTA) | yaaJ ← | putative transporter |
RA | 10,444 | G→T | 100% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 23,320 | T→A | 75.4% | F310L (TTT→TTA) | ileS → | isoleucyl‑tRNA synthetase |
RA | 24,012 | A→T | 13.8% | H541L (CAC→CTC) | ileS → | isoleucyl‑tRNA synthetase |
RA | 25,546 | G→T | 100% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
RA | 26,972 | G→T | 7.1% | A232A (GCG→GCT) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase, 4Fe‑4S protein |
RA | 27,307 | C→T | 100% | I5I (ATC→ATT) | rihC → | ribonucleoside hydrolase 3 |
RA | 29,139 | G→T | 100% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 31,710 | C→A | 100% | I298I (ATC→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,659 | C→A | 100% | R615S (CGC→AGC) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 32,802 | C→A | 100% | I662I (ATC→ATA) | carB → | carbamoyl‑phosphate synthase large subunit |
RA | 40,957 | C→A | 100% | V325V (GTG→GTT) | caiT ← | putative transporter |
RA | 42,150 | G→A | 100% | intergenic (‑219/‑253) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 42,342 | G→T | 19.7% | intergenic (‑411/‑61) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 49,840 | G→T | 100% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
RA | 54,392 | G→T | 100% | A104E (GCG→GAG) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
RA | 55,590 | G→T | 100% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 56,677 | G→T | 100% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 58,723 | G→T | 91.6% | pseudogene (250/579 nt) | yabP → | pseudogene, pentapeptide repeats‑containing |
RA | 59,320 | A→T | 81.3% | intergenic (+41/+367) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
RA | 61,967 | A→C | 6.8% | L433R (CTG→CGG) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
RA | 76,821 | G→T | 100% | G177G (GGC→GGA) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 80,123 | C→T | 100% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
RA | 80,663 | A→T | 100% | intergenic (‑468/‑192) | leuL ← / → leuO | leu operon leader peptide/global transcription factor |
RA | 81,562 | C→A | 100% | I236I (ATC→ATA) | leuO → | global transcription factor |
RA | 82,037 | C→T | 94.2% | intergenic (+238/‑80) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
RA | 93,391 | G→T | 100% | T301T (ACG→ACT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 97,521 | C→A | 100% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 102,736 | C→A | 100% | I315I (ATC→ATA) | ftsZ → | GTP‑binding tubulin‑like cell division protein |
RA | 102,769 | G→T | 100% | V326V (GTG→GTT) | ftsZ → | GTP‑binding tubulin‑like cell division protein |
RA | 103,352 | C→A | 84.6% | I103I (ATC→ATA) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 103,467 | G→T | 100% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 104,561 | G→T | 100% | A124S (GCG→TCG) | secM → | regulator of secA translation |
RA | 108,039 | C→A | 100% | intergenic (+119/+97) | mutT → / ← yacG | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP/DNA gyrase inhibitor |
RA | 108,648 | Δ1 bp | 100% | coding (439/744 nt) | zapD ← | FtsZ stabilizer |
RA | 118,873 | G→T | 100% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 119,536 | G→T | 100% | P11P (CCG→CCT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
RA | 134,028 | G→T | 100% | A153A (GCG→GCT) | cueO → | multicopper oxidase (laccase) |
RA | 135,689 | A→T | 92.6% | L675Q (CTG→CAG) | gcd ← | glucose dehydrogenase |
RA | 137,071 | G→T | 100% | I214I (ATC→ATA) | gcd ← | glucose dehydrogenase |
RA | 137,915 | G→T | 100% | intergenic (‑203/‑3) | gcd ← / → hpt | glucose dehydrogenase/hypoxanthine phosphoribosyltransferase |
RA | 142,460 | T→A | 100% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 145,641 | A→T | 8.2% | Y150N (TAC→AAC) | panB ← | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
RA | 153,472 | G→T | 100% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 158,287 | C→A | 100% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 159,666 | G→T | 100% | G359C (GGT→TGT) | hrpB → | putative ATP‑dependent helicase |
RA | 161,068 | A→C | 28.5% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
RA | 165,759 | G→T | 84.0% | E597* (GAG→TAG) | fhuA → | ferrichrome outer membrane transporter |
RA | 166,411 | T→A | 76.8% | G49G (GGT→GGA) | fhuC → | iron‑hydroxamate transporter subunit |
RA | 166,662 | C→A | 100% | S133* (TCG→TAG) | fhuC → | iron‑hydroxamate transporter subunit |
RA | 168,584 | A→T | 80.0% | L212F (TTA→TTT) | fhuB → | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components |
RA | 173,725 | G→T | 100% | G129G (GGC→GGA) | yadS ← | UPF0126 family inner membrane protein |
RA | 176,783 | G→T | 100% | D354Y (GAT→TAT) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 185,393 | A→T | 100% | F201I (TTC→ATC) | map ← | methionine aminopeptidase |
RA | 186,159 | A→G | 100% | intergenic (‑166/‑40) | map ← / → tff | methionine aminopeptidase/novel sRNA, function unknown |
RA | 196,832 | C→A | 100% | I806I (ATC→ATA) | bamA → | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
RA | 199,229 | G→T | 100% | E61D (GAG→GAT) | lpxA → | UDP‑N‑acetylglucosamine acetyltransferase |
RA | 201,962 | A→T | 100% | D117V (GAT→GTT) | dnaE → | DNA polymerase III alpha subunit |
RA | 208,013 | G→T | 100% | M616I (ATG→ATT) | ldcC → | lysine decarboxylase 2, constitutive |
RA | 212,137 | G→T | 23.7% | E128* (GAA→TAA) | nlpE → | lipoprotein involved with copper homeostasis and adhesion |
RA | 214,084 | G→T | 100% | G393G (GGC→GGA) | proS ← | prolyl‑tRNA synthetase |
RA | 217,887 | C→T | 100% | W74* (TGG→TGA) | metI ← | DL‑methionine transporter subunit |
RA | 217,932 | A→C | 100% | I59M (ATT→ATG) | metI ← | DL‑methionine transporter subunit |
RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
RA | 231,378 | C→A | 100% | R26S (CGC→AGC) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
RA | 232,860 | G→T | 100% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 236,234 | A→T | 100% | V148E (GTG→GAG) | yafV ← | putative NAD(P)‑binding C‑N hydrolase family amidase |
RA | 237,417 | A→C | 91.9% | F792V (TTT→GTT) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 238,195 | G→T | 100% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 245,306 | C→A | 93.4% | pseudogene (1252/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
RA | 248,447 | C→T | 100% | intergenic (+7/‑45) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 248,486 | C→A | 100% | intergenic (+46/‑6) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 249,008 | T→A | 5.6% | L74* (TTG→TAG) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
RA | 250,909 | A→T | 100% | L432Q (CTG→CAG) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 252,850 | C→T | 11.9% | I129I (ATC→ATT) | gpt → | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase |
RA | 253,855 | G→T | 100% | R281L (CGT→CTT) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
RA | 255,487 | A→T | 100% | S109T (TCT→ACT) | phoE ← | outer membrane phosphoporin protein E |
RA | 259,494 | G→T | 100% | C75* (TGC→TGA) | yafW ← | CP4‑6 prophage; antitoxin of the YkfI‑YafW toxin‑antitoxin system |
RA | 262,114 | C→A | 100% | D51Y (GAT→TAT) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
RA | 274,735 | A→T | 100% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
RA | 279,334 | C→A | 100% | I141I (ATC→ATA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 279,800 | G→T | 100% | E297* (GAA→TAA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 280,968 | G→T | 79.9% | intergenic (+89/‑138) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
RA | 288,249 | T→A | 100% | T137T (ACA→ACT) | yagK ← | CP4‑6 prophage; conserved protein |
RA | 290,012 | C→T | 100% | D167N (GAT→AAT) | yagM ← | CP4‑6 prophage; uncharacterized protein |
RA | 291,348 | G→A | 100% | intergenic (‑58/+59) | yagN ← / ← intF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; putative phage integrase |
RA | 294,929 | C→A | 100% | E573* (GAA→TAA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 295,695 | T→G | 6.8% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 300,770 | C→A | 100% | V49V (GTG→GTT) | ecpE ← | ECP production pilus chaperone |
RA | 302,428 | G→T | 100% | P34Q (CCG→CAG) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 307,479 | G→A | 100% | intergenic (‑432/‑344) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
RA | 309,680 | C→T | 16.0% | intergenic (‑164/‑388) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
RA | 312,532 | G→A | 100% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 314,566 | C→A | 100% | D383Y (GAT→TAT) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
RA | 317,105 | T→A | 77.6% | intergenic (+313/‑214) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 317,203 | G→A | 100% | intergenic (+411/‑116) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 317,205 | G→A | 100% | intergenic (+413/‑114) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 319,024 | C→A | 100% | R326S (CGC→AGC) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
RA | 319,381 | G→T | 100% | D445Y (GAC→TAC) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
RA | 320,920 | G→A | 100% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 321,223 | C→A | 100% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
RA | 325,740 | G→T | 78.5% | P189P (CCG→CCT) | betT → | choline transporter of high affinity |
RA | 329,372 | A→T | 100% | L258Q (CTG→CAG) | yahB ← | putative DNA‑bindng transcriptional regulator |
RA | 332,599 | G→T | 100% | A37A (GCG→GCT) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
RA | 332,897 | G→T | 81.4% | D137Y (GAT→TAT) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
RA | 335,247 | C→A | 100% | N404K (AAC→AAA) | yahG → | DUF1116 family protein |
RA | 337,720 | G→T | 100% | E295D (GAG→GAT) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
RA | 344,800 | G→T | 100% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
RA | 345,384 | G→C | 7.1% | intergenic (+101/‑339) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 345,428 | T→C | 9.6% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 350,055 | G→T | 6.3% | D547Y (GAC→TAC) | prpE → | propionate‑‑CoA ligase |
RA | 353,486 | A→T | 6.7% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 353,489 | C→T | 6.4% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 360,995 | G→T | 53.8% | A250E (GCG→GAG) | lacI ← | DNA‑binding transcriptional repressor |
JC | 361,139 | +GCCA | 10.0% | coding (605/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,692 | G→T | 33.4% | Q18K (CAG→AAG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,739 | T→A | 6.3% | K2I (AAA→ATA) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 100% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 362,629 | A→T | 100% | Y9N (TAC→AAC) | mhpR ← | mhp operon transcriptional activator |
RA | 364,561 | G→T | 100% | D18Y (GAC→TAC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
RA | 372,091 | C→A | 100% | R393R (CGG→AGG) | mhpT → | 3‑hydroxyphenylpropionic transporter |
RA | 372,581 | G→T | 100% | A118A (GCG→GCT) | yaiL → | DUF2058 family protein |
RA | 375,460 | A→C | 7.5% | intergenic (‑123/+65) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
RA | 378,179 | A→T | 100% | pseudogene (150/282 nt) | yaiX ← | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
RA | 385,815 | G→T | 100% | pseudogene (109/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 390,551 | T→G | 100% | L197R (CTG→CGG) | yaiV → | putative transcriptional regulator |
RA | 396,883 | A→G | 100% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
RA | 397,959 | G→A | 100% | A253T (GCG→ACG) | phoA → | bacterial alkaline phosphatase |
RA | 400,594 | G→T | 100% | V169V (GTC→GTA) | proC ← | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
RA | 402,340 | G→T | 100% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 404,712 | A→T | 5.3% | F255Y (TTC→TAC) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
RA | 406,075 | C→A | 100% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 411,027 | G→T | 100% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 421,799 | C→A | 100% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
RA | 424,393 | G→T | 7.4% | A431S (GCG→TCG) | secD → | SecYEG protein translocase auxillary subunit |
RA | 425,143 | G→T | 100% | T61T (ACG→ACT) | secF → | SecYEG protein translocase auxillary subunit |
RA | 426,157 | G→T | 100% | E33* (GAG→TAG) | yajD → | HNH nuclease family protein |
RA | 432,762 | G→T | 100% | P277Q (CCG→CAG) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 433,551 | G→T | 100% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 434,663 | A→C | 100% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 100% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,862 | A→T | 100% | T232T (ACT→ACA) | ispA ← | geranyltranstransferase |
RA | 437,672 | T→A | 100% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 444,489 | G→A | 100% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
RA | 446,369 | T→G | 100% | Q233P (CAG→CCG) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
RA | 449,423 | G→T | 18.4% | I67I (ATC→ATA) | yajG ← | putative lipoprotein |
RA | 450,290 | G→A | 100% | intergenic (+45/‑299) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 450,766 | G→T | 100% | A60S (GCG→TCG) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 452,111 | C→T | 6.3% | intergenic (+224/‑22) | tig → / → clpP | peptidyl‑prolyl cis/trans isomerase (trigger factor)/proteolytic subunit of ClpA‑ClpP and ClpX‑ClpP ATP‑dependent serine proteases |
RA | 456,298 | T→A | 100% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 456,588 | G→T | 100% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 461,499 | G→T | 100% | R424S (CGC→AGC) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
RA | 463,179 | C→A | 100% | I104I (ATC→ATA) | cof → | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase |
RA | 474,138 | G→T | 100% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 475,805 | C→A | 100% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
RA | 477,267 | G→T | 100% | Q865K (CAG→AAG) | acrB ← | multidrug efflux system protein |
RA | 479,244 | C→A | 100% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 100% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 481,667 | G→A | 100% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
RA | 482,757 | G→T | 100% | A256S (GCG→TCG) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
RA | 486,494 | C→A | 100% | R53S (CGC→AGC) | ybaN → | DUF454 family inner membrane protein |
RA | 495,020 | T→A | 100% | E137V (GAA→GTA) | aes ← | acetyl esterase |
RA | 500,234 | C→A | 73.7% | intergenic (‑82/‑136) | fsr ← / → ushA | putative fosmidomycin efflux system protein/bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
RA | 503,475 | C→A | 14.4% | W21L (TGG→TTG) | ybaP ← | TraB family protein |
RA | 503,944 | G→T | 100% | E91* (GAA→TAA) | ybaQ → | putative DNA‑binding transcriptional regulator |
RA | 509,737 | G→A | 100% | E97K (GAG→AAG) | cueR → | copper‑responsive regulon transcriptional regulator |
RA | 517,392 | G→T | 100% | A507A (GCG→GCT) | ybbP → | putative ABC transporter permease |
RA | 518,820 | C→A | 100% | A35E (GCG→GAG) | rhsD → | Rhs family putative polymorphic toxin |
RA | 524,334:1 | +T | 100% | pseudogene (239/491 nt) | ybbD → | pseudogene |
RA | 524,496 | T→G | 100% | pseudogene (401/491 nt) | ybbD → | pseudogene |
RA | 524,983 | G→T | 12.5% | pseudogene (28/93 nt) | ylbI → | pseudogene, Rhs family protein |
RA | 530,466 | C→A | 100% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 542,200 | Δ1 bp | 100% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 546,491 | G→T | 100% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 100% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 551,499 | G→T | 100% | R171S (CGC→AGC) | ybcI ← | DUF457 family inner membrane protein |
RA | 551,602 | A→T | 94.5% | F136L (TTT→TTA) | ybcI ← | DUF457 family inner membrane protein |
RA | 557,592 | G→T | 100% | D814Y (GAC→TAC) | sfmD → | putative outer membrane export usher protein |
RA | 572,600 | G→A | 6.4% | intergenic (‑319/‑254) | nmpC ← / → essD | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein |
RA | 576,998 | G→T | 100% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
RA | 578,193 | A→T | 9.9% | pseudogene (68/653 nt) | ybcY ← | pseudogene, DLP12 prophage; methyltransferase homology;Phage or Prophage Related |
RA | 579,692 | G→A | 7.4% | D186N (GAT→AAT) | appY → | global transcriptional activator; DLP12 prophage |
RA | 580,366 | G→T | 100% | R242S (CGC→AGC) | ompT ← | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) |
RA | 581,203 | A→T | 100% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 581,503 | G→T | 83.2% | intergenic (‑414/‑10) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 581,633 | G→T | 72.5% | L244L (CTC→CTA) | envY ← | porin thermoregulatory transcriptional activator |
RA | 583,341 | T→G | 100% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 587,021 | T→A | 5.0% | A538A (GCA→GCT) | nfrB ← | bacteriophage N4 receptor, inner membrane subunit |
RA | 590,565 | A→T | 8.3% | V112E (GTG→GAG) | cusR ← | response regulator in two‑component regulatory system with CusS |
RA | 591,864 | C→A | 100% | A270E (GCG→GAG) | cusC → | copper/silver efflux system, outer membrane component |
RA | 601,847 | A→T | 100% | I331I (ATT→ATA) | ybdK ← | weak gamma‑glutamyl:cysteine ligase |
RA | 607,931 | G→A | 100% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 608,104 | G→T | 28.4% | intergenic (‑154/‑89) | fepA ← / → fes | iron‑enterobactin outer membrane transporter/enterobactin/ferric enterobactin esterase |
RA | 608,118 | A→T | 11.5% | intergenic (‑168/‑75) | fepA ← / → fes | iron‑enterobactin outer membrane transporter/enterobactin/ferric enterobactin esterase |
RA | 614,726 | G→T | 100% | A339A (GCG→GCT) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
RA | 619,048 | C→A | 100% | A307S (GCC→TCC) | fepB ← | iron‑enterobactin transporter subunit |
RA | 620,891 | C→T | 17.2% | P184L (CCG→CTG) | entC → | isochorismate synthase 1 |
RA | 624,669 | G→T | 100% | T221T (ACG→ACT) | entA → | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
RA | 625,174 | G→T | 100% | intergenic (+5/‑176) | entH → / → cstA | enterobactin synthesis proofreading thioesterase/carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 625,364 | G→T | 100% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 627,428 | C→A | 100% | I693I (ATC→ATA) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 639,231 | G→A | 100% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 647,234 | C→T | 100% | E27K (GAA→AAA) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
RA | 647,422 | G→T | 100% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 647,509 | T→C | 100% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 100% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 652,597 | C→T | 100% | intergenic (+24/‑151) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 652,865 | Δ1 bp | 100% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 658,096 | C→A | 100% | M1M (ATG→ATT) † | ybeD ← | UPF0250 family protein |
RA | 659,689 | G→T | 100% | R320S (CGC→AGC) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
RA | 662,108 | A→T | 100% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 662,631 | C→A | 100% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 667,348 | G→T | 100% | Q99K (CAG→AAG) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
RA | 667,899 | C→A | 100% | D781Y (GAT→TAT) | leuS ← | leucyl‑tRNA synthetase |
RA | 672,142 | T→A | 100% | intergenic (‑139/‑25) | ybeQ ← / → ybeR | Sel1 family TPR‑like repeat protein/uncharacterized protein |
RA | 680,846 | G→T | 100% | F180L (TTC→TTA) | gltK ← | glutamate, aspartate ABC transporter permease subunit |
RA | 693,739 | G→T | 100% | H299N (CAC→AAC) | asnB ← | asparagine synthetase B |
RA | 700,407 | C→A | 74.8% | N336K (AAC→AAA) | nagE → | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
RA | 705,588 | C→A | 100% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 706,097 | A→C | 100% | T2T (ACT→ACG) *29G (TGA→GGA) |
fur ← uof ← |
ferric iron uptake regulon transcriptional repressor; autorepressor ryhB‑regulated fur leader peptide |
RA | 707,103 | T→A | 7.5% | L84F (TTA→TTT) | ybfE ← | LexA‑regulated protein, CopB family |
RA | 710,187 | A→T | 100% | S392C (AGT→TGT) | pgm → | phosphoglucomutase |
RA | 723,859 | G→T | 100% | V110V (GTC→GTA) | kdpA ← | potassium translocating ATPase, subunit A |
RA | 724,813 | A→T | 100% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
RA | 726,087 | G→T | 100% | R350L (CGT→CTT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,456 | G→A | 100% | R75R (AGG→AGA) | ybfB → | putative membrane protein |
RA | 730,891 | G→T | 100% | pseudogene (1303/1521 nt) | rhsO → | pseudogene, Rhs family protein |
RA | 732,494 | G→T | 100% | pseudogene (214/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 732,655 | G→T | 100% | pseudogene (375/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 737,635 | G→T | 100% | G126G (GGC→GGA) | dtpD ← | dipeptide and tripeptide permease D |
RA | 743,797 | G→T | 100% | R214R (CGC→CGA) | ybgO ← | putative fimbrial protein |
RA | 747,068 | A→T | 94.2% | I186I (ATT→ATA) | ybgQ ← | putative outer membrane protein |
RA | 747,973 | C→A | 100% | P93P (CCG→CCT) | ybgD ← | putative fimbrial‑like adhesin protein |
RA | 748,707 | A→T | 100% | I406I (ATT→ATA) | gltA ← | citrate synthase |
RA | 753,549 | G→T | 100% | Q135H (CAG→CAT) | sdhB → | succinate dehydrogenase, FeS subunit |
RA | 754,572 | G→T | 100% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 759,000 | C→A | 100% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 761,253 | C→A | 78.6% | D27Y (GAT→TAT) | mngR ← | Transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon |
RA | 765,161 | A→T | 6.5% | S576S (TCA→TCT) | mngB → | alpha‑mannosidase |
RA | 767,399 | A→T | 100% | E162D (GAA→GAT) | cydA → | cytochrome d terminal oxidase, subunit I |
RA | 784,094 | G→T | 100% | A67E (GCG→GAG) | galM ← | aldose 1‑epimerase; type‑1 mutarotase |
RA | 788,902 | G→T | 100% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 800,488 | G→T | 100% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
RA | 800,779 | G→T | 100% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 805,678 | G→T | 100% | T293T (ACG→ACT) | bioB → | biotin synthase |
RA | 806,629 | A→T | 5.7% | S265C (AGC→TGC) | bioF → | 8‑amino‑7‑oxononanoate synthase |
RA | 809,212 | G→T | 100% | M77I (ATG→ATT) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
RA | 811,634 | A→T | 13.5% | L157* (TTA→TAA) | ybhK ← | putative NAD(P)‑binding transferase |
RA | 816,302 | G→T | 100% | R18S (AGG→AGT) | ybhM → | UPF0005 family inner membrane protein |
RA | 820,503 | C→A | 100% | T354T (ACG→ACT) | ybhR ← | inner membrane putative ABC superfamily transporter permease |
RA | 828,374 | G→T | 100% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 829,009 | G→T | 100% | D162Y (GAT→TAT) | dinG → | ATP‑dependent DNA helicase |
RA | 832,445 | G→T | 100% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
RA | 837,132 | C→T | 100% | intergenic (‑145/+120) | fiu ← / ← mcbA | catecholate siderophore receptor Fiu/colanic acid mucoidy stimulation protein |
RA | 837,716 | G→T | 100% | intergenic (‑204/‑72) | mcbA ← / → rlmF | colanic acid mucoidy stimulation protein/23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
RA | 838,652 | T→G | 18.1% | F289V (TTT→GTT) | rlmF → | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
RA | 842,041 | C→A | 100% | E179* (GAA→TAA) | glnP ← | glutamine transporter subunit |
RA | 843,299 | C→A | 100% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
RA | 846,423 | C→A | 6.6% | intergenic (+2/+47) | ompX → / ← ybiP | outer membrane protein X/putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 850,161 | G→T | 100% | P353P (CCG→CCT) | ybiR → | putative transporter |
RA | 868,500 | A→T | 100% | S22S (TCA→TCT) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 876,395 | G→T | 100% | M71I (ATG→ATT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 876,447 | G→A | 100% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 879,085 | G→T | 100% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 882,672 | G→T | 100% | L42I (CTC→ATC) | ybjJ ← | putative transporter |
RA | 888,964 | C→T | 100% | intergenic (+75/‑276) | ybjN → / → potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine transporter subunit: periplasmic‑binding component of ABC superfamily |
RA | 892,358 | G→T | 100% | V257L (GTG→TTG) | potH → | putrescine transporter subunit: membrane component of ABC superfamily |
RA | 896,104 | G→T | 12.7% | intergenic (‑73/+218) | artJ ← / ← artM | arginine binding protein, periplasmic/arginine transporter subunit |
RA | 925,160 | G→T | 100% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 929,657 | T→C | 75.8% | A326A (GCT→GCC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
RA | 943,573 | G→T | 100% | A297S (GCC→TCC) | ycaM → | putative transporter |
RA | 944,255 | A→T | 7.6% | L257Q (CTG→CAG) | ycaN ← | LysR family putative transcriptional regulator |
RA | 955,568 | A→T | 100% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 958,804 | G→T | 5.8% | A452S (GCT→TCT) | rpsA → | 30S ribosomal subunit protein S1 |
RA | 968,415 | G→T | 100% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 992,767 | C→A | 100% | D68Y (GAT→TAT) | ssuE ← | NAD(P)H‑dependent FMN reductase |
RA | 994,328 | G→T | 100% | G128V (GGA→GTA) | elfD → | putative periplasmic pilin chaperone |
RA | 997,673 | A→T | 100% | T137T (ACA→ACT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 997,965 | G→T | 100% | D235Y (GAT→TAT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 1,000,841 | G→T | 100% | A206A (GCG→GCT) | pyrD → | dihydro‑orotate oxidase, FMN‑linked |
RA | 1,003,597 | G→T | 100% | D100Y (GAC→TAC) | rlmL → | fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
RA | 1,011,929 | T→A | 100% | intergenic (‑3/+66) | fabA ← / ← ycbZ | beta‑hydroxydecanoyl thioester dehydrase/putative peptidase |
RA | 1,012,331 | G→T | 12.1% | V475V (GTC→GTA) | ycbZ ← | putative peptidase |
RA | 1,024,703 | G→T | 100% | G241G (GGC→GGA) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
RA | 1,038,316 | G→T | 100% | R451S (CGT→AGT) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
RA | 1,048,928 | C→A | 100% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,049,407 | G→T | 100% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,055,132 | G→T | 100% | E141* (GAA→TAA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
RA | 1,058,131 | G→T | 93.5% | H61N (CAT→AAT) | cbpM ← | modulator of CbpA co‑chaperone |
RA | 1,067,754 | T→A | 55.5% | H189L (CAC→CTC) | rutB ← | ureidoacrylate amidohydrolase |
RA | 1,077,911 | A→C | 100% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,083,443 | G→T | 100% | S624* (TCG→TAG) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,084,103 | A→T | 100% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,097,943 | T→A | 74.8% | N19Y (AAT→TAT) | csgE ← | curlin secretion specificity factor |
RA | 1,101,777 | G→T | 75.7% | E168* (GAA→TAA) | ymdB → | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
RA | 1,104,639 | C→A | 100% | intergenic (‑242/‑152) | opgC ← / → opgG | osmoregulated periplasmic glucan succinylation membrane protein/osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
RA | 1,111,690 | G→T | 7.4% | R117S (CGT→AGT) | lpxL ← | lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
RA | 1,113,450 | A→T | 100% | I161I (ATT→ATA) | yceI ← | secreted protein |
RA | 1,114,329 | C→A | 100% | L58F (TTG→TTT) | yceJ ← | putative cytochrome b561 |
RA | 1,116,548 | T→A | 100% | intergenic (‑137/+150) | bssS ← / ← dinI | biofilm regulator/DNA damage‑inducible protein I |
RA | 1,116,964 | A→G | 100% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,118,591 | C→A | 79.5% | G47C (GGT→TGT) | yceB ← | lipoprotein, DUF1439 family |
RA | 1,122,429 | G→T | 10.0% | S56S (TCG→TCT) | yceM → | putative oxidoreductase |
RA | 1,122,994 | C→A | 100% | R245S (CGC→AGC) | yceM → | putative oxidoreductase |
RA | 1,131,521 | C→A | 100% | Q168K (CAG→AAG) | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
RA | 1,137,384 | G→T | 100% | R814S (CGC→AGC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
RA | 1,139,402 | C→A | 100% | R141L (CGC→CTC) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
RA | 1,140,834 | A→T | 81.9% | T147S (ACC→TCC) | rluC → | 23S rRNA pseudouridine(955,2504,2580) synthase |
RA | 1,146,692 | A→T | 100% | T189T (ACA→ACT) | fabG → | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase |
RA | 1,147,364 | G→T | 75.5% | intergenic (+57/‑31) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
RA | 1,151,750 | G→T | 100% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 100% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,156,310 | G→T | 100% | S233* (TCA→TAA) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
RA | 1,163,251 | A→T | 8.3% | Q66L (CAG→CTG) | ycfJ → | uncharacterized protein |
RA | 1,169,139 | G→T | 7.2% | T94T (ACC→ACA) | mfd ← | transcription‑repair coupling factor |
RA | 1,181,504 | G→T | 100% | D69Y (GAT→TAT) | pepT → | peptidase T |
RA | 1,211,169 | C→A | 100% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,219,533 | A→G | 100% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
RA | 1,220,996 | G→T | 100% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,224,292 | G→A | 100% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
RA | 1,226,292 | T→A | 100% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
RA | 1,228,591 | G→T | 100% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,245,611 | G→T | 72.2% | F228L (TTC→TTA) | dhaK ← | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit |
RA | 1,249,227 | G→T | 100% | R728S (CGT→AGT) | ycgV ← | putative adhesin |
RA | 1,249,716 | G→T | 80.2% | R565S (CGC→AGC) | ycgV ← | putative adhesin |
RA | 1,257,232 | G→T | 100% | R34S (CGC→AGC) | prs ← | phosphoribosylpyrophosphate synthase |
RA | 1,261,810 | G→A | 100% | A87A (GCG→GCA) | prmC → | N5‑glutamine methyltransferase, modifies release factors RF‑1 and RF‑2 |
RA | 1,264,442 | G→T | 100% | V274V (GTG→GTT) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
RA | 1,277,786 | G→A | 100% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,282,421 | A→G | 8.9% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,282,439 | A→G | 6.4% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,284,857 | G→T | 100% | D53Y (GAT→TAT) | rssA → | putative patatin‑like family phospholipase |
RA | 1,288,669 | A→T | 100% | intergenic (‑291/‑314) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
RA | 1,290,033 | G→T | 100% | pseudogene (416/567 nt) | insZ ← | pseudogene, transposase homolog |
RA | 1,296,729 | C→A | 100% | H431N (CAC→AAC) | oppA → | oligopeptide transporter subunit |
RA | 1,318,228 | C→A | 92.4% | S251* (TCA→TAA) | yciV → | PHP domain protein |
RA | 1,318,829 | G→T | 77.1% | E159* (GAA→TAA) | yciO → | putative RNA binding protein |
RA | 1,322,140 | T→A | 100% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,325,982 | G→T | 100% | T226T (ACG→ACT) | topA → | DNA topoisomerase I, omega subunit |
RA | 1,328,313 | C→A | 57.8% | R68S (CGT→AGT) | cysB → | N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor |
RA | 1,330,955 | G→T | 100% | D290Y (GAT→TAT) | acnA → | aconitate hydratase 1 |
RA | 1,334,046 | G→T | 5.2% | E154* (GAG→TAG) | pgpB → | phosphatidylglycerophosphatase B |
RA | 1,335,356 | A→T | 100% | H181L (CAT→CTT) | yciM → | envelope integrity maintenance protein; EnvC‑interacting protein |
RA | 1,336,599 | T→C | 17.7% | L141P (CTT→CCT) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
RA | 1,337,533 | G→T | 100% | A18E (GCA→GAA) | osmB ← | lipoprotein |
RA | 1,348,772 | G→T | 100% | P2T (CCT→ACT) A319D (GCC→GAC) |
sapC ← sapB ← |
antimicrobial peptide transport ABC transporter permease antimicrobial peptide transport ABC transporter permease |
RA | 1,350,891 | G→T | 100% | S159R (AGC→AGA) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,351,022 | G→T | 100% | R116S (CGT→AGT) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,358,855 | G→T | 100% | G123C (GGC→TGC) | puuB → | gamma‑glutamylputrescine oxidoreductase |
RA | 1,364,366 | G→A | 80.5% | intergenic (+106/‑107) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
RA | 1,365,283 | G→T | 100% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,339 | C→A | 6.8% | G294C (GGC→TGC) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,377,394 | C→T | 100% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,386,008 | G→T | 100% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 100% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,389,852 | G→T | 100% | R110S (CGC→AGC) | ynaI ← | mechanosensitive channel protein, very small conductance |
RA | 1,397,366 | A→T | 5.3% | S49S (TCT→TCA) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,412,385 | G→T | 100% | N34K (AAC→AAA) | kilR ← | Rac prophage; inhibitor of ftsZ, killing protein |
RA | 1,423,872 | T→G | 18.0% | A189A (GCT→GCG) | stfR → | Rac prophage; putative tail fiber protein |
RA | 1,424,234 | C→A | 100% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
JC JC | 1,428,894 | IS2 (–) +5 bp | 100% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,430,873 | G→T | 100% | S93* (TCA→TAA) | ompN ← | outer membrane pore protein N, non‑specific |
RA | 1,439,518 | C→A | 100% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,451,422 | A→T | 100% | T246S (ACG→TCG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
RA | 1,454,724 | G→T | 100% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,457,725 | G→T | 100% | intergenic (+30/‑71) | paaK → / → paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
RA | 1,461,041 | A→T | 100% | pseudogene (1393/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,461,872 | G→T | 80.5% | pseudogene (2224/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,469,880 | A→T | 100% | I160I (ATA→ATT) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
RA | 1,477,565 | A→T | 100% | K83I (AAA→ATA) | hrpA → | putative ATP‑dependent helicase |
RA | 1,478,971 | G→A | 100% | E552K (GAG→AAG) | hrpA → | putative ATP‑dependent helicase |
RA | 1,479,733 | G→T | 100% | D806Y (GAT→TAT) | hrpA → | putative ATP‑dependent helicase |
RA | 1,482,005 | G→T | 100% | D172Y (GAT→TAT) | ydcF → | DUF218 superfamily protein, SAM‑binding |
RA | 1,489,422 | T→A | 14.4% | intergenic (‑94/‑123) | ydcI ← / → ydcJ | putative DNA‑binding transcriptional regulator/putative metalloenzyme |
RA | 1,508,681 | C→A | 100% | F198L (TTC→TTA) | ydcU → | putative spermidine/putrescine transporter subunit |
RA | 1,510,854 | G→T | 94.4% | A340A (GCG→GCT) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
RA | 1,512,088 | G→T | 6.2% | D62Y (GAT→TAT) | ydcY → | uncharacterized protein |
RA | 1,512,106 | G→T | 79.6% | E68* (GAA→TAA) | ydcY → | uncharacterized protein |
RA | 1,514,177 | G→T | 100% | E298D (GAG→GAT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
RA | 1,514,858 | G→A | 100% | E114K (GAA→AAA) | mcbR → | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
RA | 1,519,349 | T→A | 100% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,522,387 | C→A | 100% | pseudogene (229/2037 nt) | rhsE → | pseudogene, Rhs family protein |
RA | 1,523,317 | G→T | 100% | pseudogene (1159/2037 nt) | rhsE → | pseudogene, Rhs family protein |
RA | 1,523,802 | T→G | 92.8% | pseudogene (1644/2037 nt) | rhsE → | pseudogene, Rhs family protein |
RA | 1,526,607 | G→A | 100% | D179N (GAT→AAT) | ydcC → | H repeat‑associated putative transposase |
RA | 1,531,029 | G→T | 100% | R180S (CGC→AGC) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
RA | 1,534,409 | G→T | 100% | V813V (GTC→GTA) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,537,806 | A→T | 100% | L171* (TTA→TAA) | narU ← | nitrate/nitrite transporter |
RA | 1,539,827 | C→A | 100% | pseudogene (145/951 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
RA | 1,540,399 | A→G | 93.2% | intergenic (‑114/+146) | yddL ← / ← yddG | putative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein/aromatic amino acid exporter |
RA | 1,548,144 | G→T | 100% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,548,216 | A→T | 100% | intergenic (‑121/+13) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,551,620 | C→A | 92.8% | D226Y (GAC→TAC) | ddpF ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,552,629 | C→A | 100% | D216Y (GAT→TAT) | ddpD ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,558,685 | G→T | 100% | R436S (CGC→AGC) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
RA | 1,559,507 | T→A | 100% | N162Y (AAT→TAT) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
RA | 1,563,276 | G→T | 100% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 100% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,569,502 | T→G | 100% | intergenic (‑43/+2) | pqqL ← / ← yddB | putative periplasmic M16 family zinc metalloendopeptidase/putative TonB‑dependent outer membrane receptor |
RA | 1,570,428 | G→T | 100% | I483I (ATC→ATA) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,570,826 | C→A | 100% | D351Y (GAC→TAC) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,571,658 | C→A | 6.8% | A73A (GCG→GCT) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,574,523 | T→A | 100% | L175F (TTA→TTT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
RA | 1,575,339 | G→T | 100% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,576,325 | T→A | 100% | N153Y (AAT→TAT) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,580,852 | C→A | 100% | intergenic (‑109/+225) | ydeP ← / ← ydeQ | putative oxidoreductase/putative fimbrial‑like adhesin protein |
RA | 1,586,743 | A→T | 10.3% | intergenic (‑44/+179) | hipB ← / ← yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
RA | 1,586,871 | G→T | 100% | intergenic (‑172/+51) | hipB ← / ← yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
RA | 1,590,878 | A→T | 100% | pseudogene (1367/5323 nt) | yneO ← | pseudogene, AidA homolog |
RA | 1,603,440 | G→A | 100% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
RA | 1,614,089 | G→T | 100% | E87* (GAG→TAG) | marA → | multiple antibiotic resistance transcriptional regulator |
RA | 1,614,837 | G→T | 100% | I186I (ATC→ATA) | eamA ← | cysteine and O‑acetyl‑L‑serine efflux system |
RA | 1,620,961 | T→G | 100% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,628,207 | G→A | 100% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,633,006 | C→A | 5.1% | intergenic (‑82/+281) | cspI ← / ← rzpQ | Qin prophage; cold shock protein/Rz‑like protein, Qin prophage |
RA | 1,637,458 | G→T | 25.8% | S14Y (TCT→TAT) | quuQ ← | Qin prophage; putative antitermination protein Q |
RA | 1,641,167 | A→T | 77.0% | intergenic (+173/+264) | flxA → / ← intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
RA | 1,642,051 | T→G | 5.3% | A19A (GCA→GCC) | dicC ← | Qin prophage; DNA‑binding transcriptional regulator for DicB |
RA | 1,642,135 | C→T | 100% | intergenic (‑28/‑56) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB |
RA | 1,643,955 | C→A | 100% | A30A (GCC→GCA) | dicB → | Qin prophage; cell division inhibition protein |
RA | 1,646,372 | C→A | 100% | pseudogene (565/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
RA | 1,659,446 | T→C | 11.9% | intergenic (+69/‑126) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
RA | 1,659,882 | C→A | 73.3% | S104* (TCG→TAG) | clcB → | H(+)/Cl(‑) exchange transporter |
RA | 1,661,763 | C→A | 100% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,666,805 | A→C | 78.1% | S197R (AGT→CGT) | ydgD → | putative peptidase |
RA | 1,669,413 | G→T | 12.0% | P402Q (CCG→CAG) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
RA | 1,669,592 | G→T | 100% | F342L (TTC→TTA) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
RA | 1,675,261 | T→A | 8.3% | L10* (TTA→TAA) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
RA | 1,680,642 | C→A | 100% | E68D (GAG→GAT) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
RA | 1,684,105 | C→A | 100% | intergenic (+97/‑4) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
RA | 1,689,180 | T→G | 100% | E383D (GAA→GAC) | uidA ← | beta‑D‑glucuronidase |
RA | 1,692,573 | C→A | 100% | D289Y (GAT→TAT) | malI ← | transcriptional repressor of Mal regulon |
RA | 1,696,612 | A→T | 100% | E41D (GAA→GAT) | add → | adenosine deaminase |
RA | 1,698,256 | C→T | 6.6% | A104T (GCG→ACG) | ydgJ ← | putative oxidoreductase |
RA | 1,699,862 | T→A | 100% | L119* (TTG→TAG) | ydgK → | DUF2569 family inner membrane protein |
RA | 1,700,008 | T→A | 5.5% | intergenic (+61/‑16) | ydgK → / → rsxA | DUF2569 family inner membrane protein/SoxR iron‑sulfur cluster reduction factor component; inner membrane protein of electron transport complex |
RA | 1,702,786 | G→T | 7.0% | A537A (GCG→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,702,966 | T→A | 7.2% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,015 | G→C | 5.4% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,062 | T→A | 10.2% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,071 | A→T | 9.0% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,101 | C→G | 8.3% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,710,635 | T→A | 11.3% | E282V (GAG→GTG) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,711,397 | C→T | 100% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,712,562 | C→A | 94.5% | D31Y (GAT→TAT) | mliC ← | inhibitor of c‑type lysozyme, membrane‑bound; putative lipoprotein |
RA | 1,717,809 | G→A | 68.7% | V478I (GTC→ATC) | ydhK → | putative efflux protein (PET) component of YdhJK efflux pump |
RA | 1,718,414 | A→T | 77.6% | Y167N (TAT→AAT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
RA | 1,723,809 | G→T | 100% | E156* (GAA→TAA) | lhr → | putative ATP‑dependent helicase |
RA | 1,729,371 | T→A | 11.4% | V227E (GTG→GAG) | mepH → | murein DD‑endopeptidase, space‑maker hydrolase |
RA | 1,735,082 | G→T | 74.7% | V305V (GTG→GTT) | ydhC → | putative arabinose efflux transporter |
RA | 1,738,733 | C→A | 7.6% | I340I (ATC→ATA) | mdtK → | multidrug efflux system transporter |
RA | 1,739,015 | T→A | 80.3% | I434I (ATT→ATA) | mdtK → | multidrug efflux system transporter |
RA | 1,754,950 | T→A | 100% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,755,150 | A→T | 100% | L300* (TTG→TAG) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,764,150 | G→T | 100% | D274Y (GAT→TAT) | ydiK → | UPF0118 family inner membrane protein |
RA | 1,768,689 | C→A | 100% | S215* (TCA→TAA) | ydiB → | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
RA | 1,769,763 | T→A | 100% | intergenic (+62/‑81) | aroD → / → ydiF | 3‑dehydroquinate dehydratase/putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,770,281 | T→A | 100% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,777,451 | C→A | 100% | A55E (GCG→GAG) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
RA | 1,781,790 | A→T | 5.9% | Q30L (CAA→CTA) | ppsR → | bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
RA | 1,782,065 | A→T | 80.6% | N122Y (AAT→TAT) | ppsR → | bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
RA | 1,782,353 | C→A | 21.5% | R218S (CGC→AGC) | ppsR → | bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase |
RA | 1,783,091 | G→T | 100% | E134* (GAG→TAG) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
RA | 1,784,871 | C→A | 36.6% | D211Y (GAT→TAT) | ydiU ← | UPF0061 family protein |
RA | 1,796,048 | C→A | 5.4% | A260A (GCG→GCT) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,796,101 | C→A | 100% | D243Y (GAC→TAC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,800,129 | C→T | 100% | W71* (TGG→TAG) | ydiY ← | acid‑inducible putative outer membrane protein |
RA | 1,801,745 | T→G | 7.9% | L30R (CTG→CGG) | ydiZ → | uncharacterized protein |
RA | 1,802,047 | G→A | 100% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,803,109 | C→T | 100% | A128T (GCC→ACC) | yniB ← | putative inner membrane protein |
RA | 1,812,514 | C→A | 100% | D82Y (GAT→TAT) | chbF ← | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
RA | 1,816,436 | A→T | 6.8% | R26R (CGT→CGA) | osmE ← | osmotically‑inducible lipoprotein |
RA | 1,818,738 | C→A | 72.5% | D153Y (GAC→TAC) | ves ← | cold‑ and stress‑inducible protein |
RA | 1,819,892 | C→A | 73.6% | intergenic (‑10/+320) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
RA | 1,820,888 | C→A | 100% | C98F (TGC→TTC) | astE ← | succinylglutamate desuccinylase |
RA | 1,821,696 | A→T | 100% | L274Q (CTG→CAG) | astB ← | succinylarginine dihydrolase |
RA | 1,825,763 | C→A | 100% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,825,775 | T→A | 6.3% | S155S (TCA→TCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,829,319 | C→A | 100% | I85I (ATC→ATA) | ydjZ → | TVP38/TMEM64 family inner membrane protein |
RA | 1,832,413 | C→A | 100% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 100% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,834,879 | G→T | 8.9% | G386C (GGC→TGC) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,836,192 | T→A | 100% | I67I (ATA→ATT) | ynjH ← | DUF1496 family protein |
RA | 1,839,854 | C→A | 93.8% | R455L (CGC→CTC) | topB ← | DNA topoisomerase III |
RA | 1,842,276 | T→A | 5.6% | intergenic (‑11/+106) | selD ← / ← ydjA | selenophosphate synthase/putative oxidoreductase |
RA | 1,852,274 | C→A | 100% | D273Y (GAT→TAT) | ydjJ ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,852,913 | C→A | 91.8% | E60* (GAA→TAA) | ydjJ ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,854,172 | A→T | 6.0% | G105G (GGT→GGA) | ydjK ← | putative transporter |
RA | 1,855,239 | A→T | 75.4% | N117K (AAT→AAA) | ydjL ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,859,132 | A→C | 100% | A254A (GCT→GCG) | yeaE ← | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
RA | 1,860,183 | G→T | 100% | R183S (CGC→AGC) | mipA ← | scaffolding protein for murein synthesizing machinery |
RA | 1,864,914 | G→T | 7.1% | L91L (CTG→CTT) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,000 | C→A | 100% | P120Q (CCA→CAA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,409 | T→A | 7.8% | I256I (ATT→ATA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,865,422 | C→A | 100% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,870,743 | C→A | 100% | H272N (CAT→AAT) | yeaN → | putative transporter |
RA | 1,872,054 | A→T | 100% | E28V (GAG→GTG) | yeaP → | diguanylate cyclase |
RA | 1,872,520 | G→T | 100% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,874,924 | T→A | 100% | V31V (GTA→GTT) | leuE ← | leucine efflux protein |
RA | 1,875,096 | G→T | 100% | intergenic (‑80/+47) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
RA | 1,881,645 | C→A | 100% | D202Y (GAT→TAT) | rnd ← | ribonuclease D |
RA | 1,885,611 | G→T | 100% | R628S (CGT→AGT) | yoaA ← | putative ATP‑dependent helicase, DinG family |
RA | 1,886,725 | G→T | 100% | I256I (ATC→ATA) | yoaA ← | putative ATP‑dependent helicase, DinG family |
RA | 1,909,342 | T→A | 100% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,922,164 | C→A | 92.5% | P311P (CCG→CCT) | ptrB ← | protease II |
RA | 1,932,296 | G→T | 77.5% | D131Y (GAT→TAT) | pykA → | pyruvate kinase II |
RA | 1,932,622 | C→A | 9.0% | I239I (ATC→ATA) | pykA → | pyruvate kinase II |
RA | 1,933,029 | A→T | 12.6% | H375L (CAC→CTC) | pykA → | pyruvate kinase II |
RA | 1,940,498 | G→T | 100% | intergenic (‑61/‑10) | yobI ← / → yebB | uncharacterized protein/DUF830 family protein |
RA | 1,942,649 | A→G | 7.7% | F81L (TTT→CTT) | nudB ← | dihydroneopterin triphosphate pyrophosphatase |
RA | 1,944,177 | C→A | 100% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,945,085 | C→A | 16.6% | intergenic (‑306/‑4) | aspS ← / → yecD | aspartyl‑tRNA synthetase/isochorismatase family protein |
RA | 1,951,334 | C→A | 100% | T352T (ACG→ACT) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
RA | 1,953,876 | C→A | 100% | P76P (CCG→CCT) | yecM ← | putative metal‑binding enzyme |
RA | 1,955,401 | C→A | 79.5% | S361S (TCC→TCA) | argS → | arginyl‑tRNA synthetase |
RA | 1,959,915 | C→A | 100% | P178P (CCG→CCT) | flhB ← | flagellin export apparatus, substrate specificity protein |
RA | 1,962,923 | C→A | 100% | M233I (ATG→ATT) | cheR ← | chemotaxis regulator, protein‑glutamate methyltransferase |
RA | 1,963,075 | G→T | 77.1% | R183R (CGG→AGG) | cheR ← | chemotaxis regulator, protein‑glutamate methyltransferase |
RA | 1,969,291 | G→T | 100% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,970,820 | G→T | 92.2% | R193S (CGT→AGT) | motA ← | proton conductor component of flagella motor |
RA | 1,984,987 | C→A | 100% | T38T (ACG→ACT) | yecA ← | UPF0149 family protein |
RA | 1,986,289 | T→A | 100% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
RA | 1,993,530 | C→A | 100% | E113* (GAG→TAG) | fliY ← | cystine transporter subunit |
RA | 1,997,314 | G→T | 100% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
RA | 1,999,632 | G→T | 100% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
RA | 2,002,354 | C→A | 100% | L199L (CTC→CTA) | yedE → | UPF0394 family sulfur transport domain‑containing inner membrane protein |
RA | 2,004,533 | G→T | 100% | T151T (ACG→ACT) | yedL → | putative acyl transferase |
RA | 2,020,166 | C→A | 100% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,021,954 | C→A | 93.5% | E298D (GAG→GAT) | yedI ← | DUF808 family inner membrane protein |
RA | 2,035,090 | C→A | 100% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,041,346 | C→A | 100% | I976I (ATC→ATA) | yeeJ → | putative adhesin |
RA | 2,041,721 | C→A | 18.2% | I1101I (ATC→ATA) | yeeJ → | putative adhesin |
RA | 2,046,600 | G→T | 100% | pseudogene (210/1053 nt) | yeeL ← | pseudogene, glycosyltransferase homology |
RA | 2,049,111 | C→A | 100% | T190T (ACC→ACA) | amn → | AMP nucleosidase |
RA | 2,067,908 | T→A | 83.2% | V963V (GTT→GTA) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,069,147 | G→T | 23.8% | P296P (CCG→CCT) | yeeR → | CP4‑44 prophage; putative membrane protein |
RA | 2,074,680 | A→T | 100% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
RA | 2,077,212 | A→T | 100% | N326Y (AAT→TAT) | sbcB → | exodeoxyribonuclease I; exonuclease I |
JC JC | 2,080,274 | IS2 (–) +5 bp | 100% | coding (266‑270/1359 nt) | plaP ← | putrescine importer, low affinity |
RA | 2,086,004 | C→A | 100% | A42A (GCC→GCA) | hisC → | histidinol‑phosphate aminotransferase |
RA | 2,093,612 | C→A | 93.5% | E380* (GAA→TAA) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
RA | 2,098,995 | C→A | 100% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,101,912 | T→G | 100% | E385A (GAG→GCG) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,102,922 | G→T | 8.5% | C48* (TGC→TGA) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
RA | 2,109,738 | C→A | 5.2% | E291* (GAA→TAA) | wcaL ← | putative glycosyl transferase |
RA | 2,110,346 | G→A | 100% | T88I (ACC→ATC) | wcaL ← | putative glycosyl transferase |
RA | 2,114,911 | A→T | 100% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,118,194 | A→T | 5.5% | L345Q (CTG→CAG) | wcaI ← | putative glycosyl transferase |
RA | 2,122,013 | G→T | 100% | T119T (ACC→ACA) | wcaF ← | putative acyl transferase |
RA | 2,122,266 | G→T | 100% | S35* (TCG→TAG) | wcaF ← | putative acyl transferase |
RA | 2,122,453 | C→T | 100% | A227T (GCT→ACT) | wcaE ← | putative glycosyl transferase |
RA | 2,122,653 | C→T | 100% | W160* (TGG→TAG) | wcaE ← | putative glycosyl transferase |
RA | 2,124,268 | A→T | 5.4% | F31Y (TTC→TAC) | wcaD ← | putative colanic acid polymerase |
RA | 2,128,128 | T→A | 100% | K336* (AAA→TAA) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
RA | 2,138,039 | C→A | 91.1% | I431I (ATC→ATA) | yegE → | putative diguanylate cyclase |
RA | 2,139,910 | G→T | 100% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,141,613 | G→T | 93.8% | V153V (GTG→GTT) | yegD → | Hsp70 chaperone family protein |
RA | 2,144,474 | C→A | 100% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,149,603 | A→T | 100% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
RA | 2,152,444 | C→A | 100% | A193E (GCG→GAG) | mdtC → | multidrug efflux system, subunit C |
RA | 2,168,795 | C→A | 100% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,170,713 | C→A | 12.3% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,724 | G→T | 10.1% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,175,947 | A→T | 9.8% | V105E (GTG→GAG) | yegW ← | putative DNA‑binding transcriptional regulator |
RA | 2,179,205 | G→T | 100% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
RA | 2,181,645 | A→G | 100% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
RA | 2,194,695 | T→A | 100% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
RA | 2,195,449 | A→T | 100% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,198,343 | C→A | 100% | S90Y (TCT→TAT) | yehL → | putative ABC superfamily transporter ATP‑binding subunit |
RA | 2,209,162 | C→A | 100% | I9I (ATC→ATA) | yohO → | putative membrane protein |
RA | 2,214,240 | G→T | 7.3% | S410* (TCG→TAG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
RA | 2,216,296 | C→A | 100% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,218,022 | C→A | 100% | E110* (GAA→TAA) | pbpG ← | D‑alanyl‑D‑alanine endopeptidase |
RA | 2,222,970 | T→A | 100% | N299Y (AAT→TAT) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,223,247 | C→T | 100% | W206* (TGG→TGA) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,225,190 | C→T | 100% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
RA | 2,234,532 | C→A | 100% | D206Y (GAT→TAT) | galS ← | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
RA | 2,237,098 | G→T | 100% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,241,222 | T→G | 100% | I264L (ATT→CTT) | lysP ← | lysine transporter |
RA | 2,243,991 | T→A | 100% | W266R (TGG→AGG) | yeiH → | UPF0324 family inner membrane protein |
RA | 2,245,476 | G→A | 81.0% | A100T (GCC→ACC) | yeiI → | putative kinase |
RA | 2,248,657 | C→A | 100% | K3N (AAG→AAT) | rihB ← | ribonucleoside hydrolase 2 |
RA | 2,253,174 | T→A | 80.3% | intergenic (‑399/+24) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
RA | 2,263,137 | C→A | 100% | intergenic (+91/‑321) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,264,143 | G→A | 100% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,287,829 | C→A | 100% | S185S (TCG→TCT) | ccmF ← | heme lyase, CcmF subunit |
RA | 2,289,043 | C→A | 100% | W8L (TGG→TTG) | ccmD ← | cytochrome c biogenesis protein |
RA | 2,289,374 | C→A | 100% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,298,128 | C→T | 7.0% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,159 | T→C | 10.4% | intergenic (+287/+428) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,303,070 | T→G | 100% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,305,116 | C→A | 100% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,305,135 | T→C | 100% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
RA | 2,313,625 | T→A | 9.2% | V35E (GTA→GAA) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
RA | 2,318,825 | G→T | 100% | V197V (GTG→GTT) | atoE → | short chain fatty acid transporter |
RA | 2,319,752 | C→A | 100% | N55K (AAC→AAA) | atoB → | acetyl‑CoA acetyltransferase |
RA | 2,320,529 | T→A | 11.2% | I314I (ATT→ATA) | atoB → | acetyl‑CoA acetyltransferase |
RA | 2,322,609 | C→A | 100% | W223L (TGG→TTG) | yfaQ ← | tandem DUF2300 domain protein, putative host defense protein |
RA | 2,323,622 | G→T | 17.6% | pseudogene (4260/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
RA | 2,330,502 | C→A | 100% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,338,233 | A→C | 77.3% | intergenic (‑585/‑111) | yfaL ← / → nrdA | adhesin/ribonucleoside‑diphosphate reductase 1, alpha subunit |
RA | 2,339,641 | T→A | 22.8% | V433E (GTG→GAG) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
RA | 2,342,897 | C→A | 100% | D19Y (GAC→TAC) | inaA ← | acid‑inducible Kdo/WaaP family putative kinase |
RA | 2,348,894 | T→A | 100% | V384E (GTG→GAG) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,352,573 | C→A | 100% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,358,641 | G→T | 100% | I153I (ATC→ATA) | ais ← | putative LPS core heptose(II)‑phosphate phosphatase |
RA | 2,359,147 | T→A | 10.9% | intergenic (‑48/‑260) | ais ← / → arnB | putative LPS core heptose(II)‑phosphate phosphatase/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,359,673 | G→T | 100% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 100% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,370,361:1 | +G | 100% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,765 | G→C | 81.7% | L103V (CTT→GTT) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 100% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,376,959 | C→T | 100% | N256N (AAC→AAT) | elaD → | protease, capable of cleaving an AMC‑ubiquitin model substrate |
RA | 2,380,078 | C→T | 100% | S247F (TCT→TTT) | yfbL → | putative peptidase |
RA | 2,383,897 | C→A | 100% | R363L (CGC→CTC) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,399,210 | G→T | 100% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,400,858 | C→A | 100% | intergenic (‑738/‑182) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
RA | 2,404,772 | C→A | 100% | A20A (GCG→GCT) | yfbS ← | putative transporter |
RA | 2,405,946 | T→G | 100% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,409,935 | G→T | 95.0% | A570A (GCG→GCT) | pta → | phosphate acetyltransferase |
RA | 2,412,205 | C→A | 100% | D151Y (GAT→TAT) | yfcD ← | putative NUDIX hydrolase |
RA | 2,416,101 | C→A | 100% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
RA | 2,422,841 | C→A | 100% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 100% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,450,335 | C→T | 100% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,346 | G→T | 100% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,770 | C→A | 7.6% | V623V (GTG→GTT) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,452,454 | G→T | 100% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,454,297 | T→G | 100% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,456,705 | C→A | 100% | S72Y (TCC→TAC) | yfdF → | uncharacterized protein |
RA | 2,459,065 | C→A | 5.3% | L96I (CTC→ATC) | yfdC → | putative inner membrane protein |
RA | 2,459,976 | G→T | 100% | intergenic (+114/‑48) | argW → / → intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
RA | 2,467,970 | G→T | 82.3% | D154Y (GAC→TAC) | yfdQ → | CPS‑53 (KpLE1) prophage; uncharacterized protein |
RA | 2,474,353 | G→T | 100% | Q435K (CAG→AAG) | emrY ← | putative multidrug efflux system |
RA | 2,474,418 | G→T | 100% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,476,524 | T→A | 100% | N99Y (AAT→TAT) | emrK ← | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
RA | 2,481,974 | G→T | 100% | S225* (TCA→TAA) | yfdE ← | acetyl‑CoA:oxalate CoA‑transferase |
RA | 2,488,416 | G→T | 100% | P80P (CCG→CCT) | ypdI → | putative lipoprotein involved in colanic acid biosynthesis |
RA | 2,497,475 | C→A | 9.1% | E164* (GAG→TAG) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,497,946 | G→T | 100% | L7I (CTC→ATC) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,499,568 | C→A | 100% | D182Y (GAC→TAC) | ypdF ← | Xaa‑Pro aminopeptidase |
RA | 2,512,279 | G→T | 79.1% | D112Y (GAT→TAT) | yfeC → | DUF1323 family putative DNA‑binding protein |
RA | 2,513,935 | A→T | 100% | Y73N (TAC→AAC) | gltX ← | glutamyl‑tRNA synthetase |
RA | 2,520,652 | C→A | 100% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
RA | 2,521,009 | C→A | 15.1% | V235V (GTC→GTA) | yfeH → | putative inorganic ion transporter |
RA | 2,524,056 | C→A | 100% | A179A (GCG→GCT) | zipA ← | FtsZ stabilizer |
RA | 2,526,794 | C→T | 100% | intergenic (+55/‑329) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
RA | 2,539,673 | C→A | 14.8% | T181K (ACA→AAA) | murQ → | N‑acetylmuramic acid 6‑phosphate (MurNAc‑6‑P) etherase |
RA | 2,542,627 | T→G | 100% | I389M (ATT→ATG) | yfeW → | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity |
RA | 2,549,676 | C→A | 100% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
RA | 2,552,461 | A→G | 75.3% | N82S (AAT→AGT) | intZ → | CPZ‑55 prophage; putative phage integrase |
RA | 2,556,744 | T→C | 11.3% | intergenic (+268/‑207) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,556,786 | G→T | 100% | intergenic (+310/‑165) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,561,714 | T→A | 7.9% | Q386L (CAG→CTG) | eutG ← | ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, converts acetaldehyde to ethanol |
RA | 2,567,211 | C→A | 100% | D152Y (GAT→TAT) | eutT ← | cobalamin adenosyltransferase involved in ethanolamine utilization |
RA | 2,568,720 | C→T | 100% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
RA | 2,573,360 | C→A | 11.8% | A122A (GCC→GCA) | tktB → | transketolase 2, thiamine triphosphate‑binding |
RA | 2,574,820 | C→A | 100% | A609E (GCG→GAG) | tktB → | transketolase 2, thiamine triphosphate‑binding |
RA | 2,576,325 | C→A | 100% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,578,824 | C→A | 5.6% | A21S (GCC→TCC) | aegA ← | putative oxidoreductase, FeS binding subunit/NAD/FAD‑binding subunit |
RA | 2,579,561 | G→T | 100% | G158C (GGC→TGC) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP (NarL) |
RA | 2,587,029:1 | +G | 100% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,933 | G→A | 100% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,597,173 | T→G | 100% | L666R (CTG→CGG) | hyfB → | hydrogenase 4, membrane subunit |
RA | 2,601,971 | C→A | 13.7% | I42I (ATC→ATA) | hyfG → | hydrogenase 4, subunit |
RA | 2,604,776 | A→T | 8.3% | S238C (AGT→TGT) | hyfI → | hydrogenase 4, Fe‑S subunit |
RA | 2,605,760 | C→A | 5.5% | L168I (CTT→ATT) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,606,516 | G→T | 100% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,610,919 | C→A | 100% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
RA | 2,614,168 | C→A | 100% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,618,693 | G→T | 100% | E74* (GAA→TAA) | ppx → | exopolyphosphatase |
RA | 2,632,012 | C→A | 100% | intergenic (‑1/+10) | bamB ← / ← yfgM | BamABCDE complex OM biogenesis lipoprotein/putative anti‑RcsB factor |
RA | 2,633,402 | C→A | 100% | R178L (CGC→CTC) | hisS ← | histidyl tRNA synthetase |
RA | 2,639,116 | C→A | 100% | A523A (GCG→GCT) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
RA | 2,643,336 | C→A | 100% | D771Y (GAC→TAC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,645,592 | C→A | 100% | D19Y (GAC→TAC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,651,665 | G→T | 100% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,655,084 | A→C | 59.5% | L136R (CTG→CGG) | iscR ← | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor |
RA | 2,659,594 | C→A | 100% | L267L (CTC→CTA) | csiE → | stationary phase inducible protein |
RA | 2,665,772 | G→T | 100% | E123* (GAA→TAA) | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
RA | 2,668,397 | C→A | 93.0% | G242C (GGT→TGT) | yphC ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 2,669,978 | C→A | 100% | A69A (GCG→GCT) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
RA | 2,671,274 | C→A | 100% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,679,371 | G→T | 15.4% | A60S (GCT→TCT) | hmp → | fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
RA | 2,681,873 | T→A | 100% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,683,829 | C→A | 100% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,688,006 | C→A | 100% | P299P (CCG→CCT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
RA | 2,689,267 | C→A | 100% | I36I (ATC→ATA) | mltF → | membrane‑bound lytic transglycosylase F, murein hydrolase |
RA | 2,692,793 | C→A | 100% | H226N (CAT→AAT) | yfhH → | putative DNA‑binding transcriptional regulator |
RA | 2,694,843 | G→T | 100% | I82I (ATC→ATA) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
RA | 2,699,380 | C→A | 100% | P368P (CCG→CCT) | lepA ← | back‑translocating elongation factor EF4, GTPase |
RA | 2,699,880 | T→A | 100% | N202Y (AAC→TAC) | lepA ← | back‑translocating elongation factor EF4, GTPase |
JC JC | 2,709,656 | IS2 (–) +5 bp | 100% | coding (149‑153/384 nt) | grcA ← | autonomous glycyl radical cofactor |
RA | 2,711,755 | C→A | 100% | D45Y (GAC→TAC) | yfiF ← | putative methyltransferase |
RA | 2,712,342 | T→A | 10.1% | G83G (GGT→GGA) | trxC → | thioredoxin 2 |
RA | 2,715,643 | G→T | 100% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,725,747 | G→T | 100% | R596S (CGC→AGC) | clpB ← | protein disaggregation chaperone |
RA | 2,726,786 | C→A | 100% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
RA | 2,727,416 | C→A | 100% | L39L (CTG→CTT) | clpB ← | protein disaggregation chaperone |
RA | 2,730,042 | T→G | 79.8% | S180A (TCC→GCC) | bamD → | BamABCDE complex OM biogenesis lipoprotein |
RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
RA | 2,736,714 | C→A | 100% | R325S (CGC→AGC) | yfiN → | putative membrane‑anchored diguanylate cyclase with an N‑terminal periplasmic domain |
RA | 2,742,155 | C→A | 5.1% | T8K (ACG→AAG) | yfjD → | UPF0053 family inner membrane protein |
RA | 2,743,438 | C→A | 100% | intergenic (+19/+36) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
RA | 2,751,558 | G→T | 100% | T134T (ACC→ACA) | yfjH ← | CP4‑57 prophage; uncharacterized protein |
RA | 2,763,057 | C→A | 100% | intergenic (+212/‑5) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
RA | 2,771,358 | G→A | 100% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,778,820 | G→A | 100% | intergenic (‑450/+301) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,779,067 | C→A | 100% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,798,195 | A→T | 100% | K8* (AAA→TAA) | proV → | glycine betaine transporter subunit |
RA | 2,801,418 | T→G | 9.2% | W310G (TGG→GGG) | proX → | glycine betaine transporter subunit |
RA | 2,801,706 | C→A | 100% | pseudogene (32/1178 nt) | ygaY → | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein |
RA | 2,808,907 | C→A | 100% | E298* (GAA→TAA) | gshA ← | glutamate‑cysteine ligase |
RA | 2,825,783 | C→T | 100% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,828,952 | C→A | 100% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
RA | 2,831,086 | C→A | 100% | E127* (GAA→TAA) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
RA | 2,831,929 | T→A | 100% | E232V (GAA→GTA) | ascG ← | asc operon transcriptional repressor; prpBC operon repressor |
RA | 2,835,094 | C→A | 100% | P249Q (CCG→CAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,836,554 | G→T | 100% | I84I (ATC→ATA) | hycH ← | hydrogenase 3 maturation protein |
RA | 2,837,721 | C→A | 100% | D131Y (GAC→TAC) | hycF ← | formate hydrogenlyase complex iron‑sulfur protein |
RA | 2,841,044 | C→A | 100% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
RA | 2,844,024 | T→A | 81.2% | C7S (TGC→AGC) | hypA → | protein involved in nickel insertion into hydrogenases 3 |
RA | 2,845,954 | A→T | 6.4% | T154S (ACC→TCC) | hypD → | hydrogenase maturation protein |
RA | 2,846,112 | C→A | 100% | I206I (ATC→ATA) | hypD → | hydrogenase maturation protein |
RA | 2,848,002 | T→A | 100% | C102* (TGT→TGA) | fhlA → | formate hydrogenlyase transcriptional activator |
RA | 2,850,790 | C→A | 100% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,852,854 | G→T | 100% | P801P (CCG→CCT) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,869,780 | G→A | 100% | intergenic (‑92/‑160) | cysD ← / → iap | sulfate adenylyltransferase, subunit 2/aminopeptidase in alkaline phosphatase isozyme conversion |
RA | 2,870,278 | C→A | 100% | I113I (ATC→ATA) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
RA | 2,873,087 | G→T | 100% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,876,760 | C→T | 100% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,878,098 | T→A | 78.2% | A827A (GCA→GCT) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,878,668 | G→T | 100% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,879,449 | G→T | 100% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,880,751 | C→A | 100% | noncoding (39/56 nt) | sokX → | sok‑related sRNA, function unknown |
RA | 2,881,078 | G→T | 90.1% | G198G (GGC→GGA) | cysH ← | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
RA | 2,884,385 | G→T | 100% | V291V (GTC→GTA) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
RA | 2,888,584 | G→T | 100% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
RA | 2,889,129 | C→A | 100% | A4S (GCA→TCA) | ygcQ ← | putative flavoprotein |
RA | 2,893,402 | T→A | 10.2% | A77A (GCA→GCT) | ygcW ← | putative dehydrogenase |
RA | 2,893,446 | T→A | 100% | K63* (AAA→TAA) | ygcW ← | putative dehydrogenase |
RA | 2,894,388 | C→A | 83.9% | V146V (GTC→GTA) | yqcE → | MFS transporter family protein |
RA | 2,902,302 | C→A | 91.5% | D242Y (GAT→TAT) | pyrG ← | CTP synthetase |
RA | 2,909,577 | T→G | 15.5% | L388V (TTA→GTA) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
RA | 2,913,019 | C→A | 100% | A363S (GCT→TCT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
RA | 2,913,502 | C→A | 78.8% | D202Y (GAT→TAT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
RA | 2,914,467 | T→G | 79.3% | V331V (GTA→GTC) | gudP ← | putative D‑glucarate transporter |
RA | 2,915,998 | C→A | 100% | A116S (GCT→TCT) | yqcA ← | short‑chain flavodoxin, FMN‑binding |
RA | 2,918,415 | G→A | 100% | P75P (CCC→CCT) | syd ← | SecY‑interacting protein |
RA | 2,919,922 | G→T | 100% | D86Y (GAT→TAT) | ygdH → | UPF0717 family protein |
RA | 2,920,050 | C→A | 100% | I128I (ATC→ATA) | ygdH → | UPF0717 family protein |
RA | 2,921,101 | C→A | 100% | intergenic (+70/‑487) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
RA | 2,921,245 | G→T | 100% | intergenic (+214/‑343) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
RA | 2,931,717 | C→A | 100% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,932,835 | C→T | 100% | R37C (CGC→TGC) | fucR → | l‑fucose operon activator |
RA | 2,934,843 | G→T | 100% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,936,836 | C→A | 100% | A47A (GCC→GCA) | csdA → | cysteine sulfinate desulfinase |
RA | 2,939,313 | G→T | 74.7% | intergenic (‑112/+127) | tcdA ← / ← mltA | tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA/membrane‑bound lytic murein transglycosylase A |
RA | 2,939,832 | C→A | 5.0% | E236* (GAA→TAA) | mltA ← | membrane‑bound lytic murein transglycosylase A |
RA | 2,939,859 | Δ1 bp | 13.7% | coding (679/1098 nt) | mltA ← | membrane‑bound lytic murein transglycosylase A |
RA | 2,939,961 | T→G | 55.6% | S193R (AGT→CGT) | mltA ← | membrane‑bound lytic murein transglycosylase A |
RA | 2,940,854 | G→T | 13.8% | intergenic (+32/‑2) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
RA | 2,941,341 | G→A | 100% | L343L (CTC→CTT) | amiC ← | N‑acetylmuramoyl‑L‑alanine amidase |
RA | 2,945,306 | C→G | 100% | G172A (GGC→GCC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
RA | 2,959,004 | G→A | 100% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
RA | 2,962,962 | T→A | 100% | intergenic (‑626/‑59) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,973,968 | T→A | 72.3% | G9G (GGA→GGT) | ygeA ← | Asp/Glu_racemase family protein |
RA | 2,974,073 | C→T | 100% | intergenic (‑79/+50) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
RA | 2,980,488 | C→A | 100% | intergenic (+53/‑407) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
RA | 2,984,747 | G→T | 100% | D41Y (GAT→TAT) | ygeG → | SycD‑like chaperone family TPR‑repeat‑containing protein |
RA | 2,985,256 | G→T | 100% | intergenic (+138/‑197) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
RA | 2,985,472 | T→A | 5.3% | F7Y (TTC→TAC) | ygeH → | putative transcriptional regulator |
RA | 2,985,884 | C→T | 100% | I144I (ATC→ATT) | ygeH → | putative transcriptional regulator |
RA | 2,986,052 | G→T | 100% | L200F (TTG→TTT) | ygeH → | putative transcriptional regulator |
RA | 2,988,355 | C→A | 100% | pseudogene (97/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
RA | 2,988,554 | G→A | 100% | intergenic (‑103/+119) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,988,934 | G→T | 6.6% | pseudogene (186/447 nt) | ygeN ← | pseudogene |
RA | 2,989,295 | C→A | 100% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,993,211 | C→A | 100% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,699 | C→A | 100% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,999,827 | C→A | 100% | D69E (GAC→GAA) | ygeW → | putative carbamoyltransferase |
RA | 3,000,265 | G→T | 10.4% | M215I (ATG→ATT) | ygeW → | putative carbamoyltransferase |
RA | 3,009,187 | G→T | 100% | intergenic (+90/‑232) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
RA | 3,017,285 | G→T | 100% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,018,544 | G→T | 100% | A279S (GCC→TCC) | xanQ → | xanthine permease |
RA | 3,022,562 | C→T | 100% | G577R (GGA→AGA) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,081 | A→C | 100% | V70V (GTT→GTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,983 | C→G | 100% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,030,181 | G→T | 100% | H429N (CAT→AAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,030,592 | T→A | 94.3% | N292Y (AAT→TAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,039,409 | T→G | 12.4% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,039,703 | C→A | 100% | A900S (GCG→TCG) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,041,321 | G→T | 100% | I360I (ATC→ATA) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,044,464 | G→A | 100% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,049,220 | C→A | 100% | R84R (CGG→AGG) | zapA → | FtsZ stabilizer |
RA | 3,049,740 | C→A | 100% | L47L (CTC→CTA) | fau → | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,050,404 | G→T | 84.5% | intergenic (+57/+133) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
RA | 3,058,769 | C→T | 100% | I203I (ATC→ATT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,064,914 | G→T | 100% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
RA | 3,065,123 | C→T | 100% | G287S (GGT→AGT) | pgk ← | phosphoglycerate kinase |
RA | 3,066,554 | A→T | 11.1% | L166* (TTG→TAG) | epd ← | D‑erythrose 4‑phosphate dehydrogenase |
RA | 3,074,591 | G→T | 100% | A135E (GCG→GAG) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
RA | 3,075,114 | C→A | 100% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 100% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,077,302 | C→A | 100% | D657Y (GAT→TAT) | speA ← | biosynthetic arginine decarboxylase, PLP‑binding |
RA | 3,080,618 | T→A | 100% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,084,305 | G→T | 74.0% | K200N (AAG→AAT) | endA → | DNA‑specific endonuclease I |
RA | 3,084,798 | C→A | 100% | L102L (CTC→CTA) | rsmE → | 16S rRNA m(3)U1498 methyltransferase, SAM‑dependent |
RA | 3,086,574 | T→A | 82.2% | F93L (TTT→TTA) | yqgE → | uncharacterized protein |
RA | 3,088,065 | C→A | 100% | V125V (GTG→GTT) | yggR ← | putative PilT family AAA+ ATPase |
RA | 3,097,262 | C→T | 100% | F297F (TTC→TTT) | mutY → | adenine DNA glycosylase |
RA | 3,098,230 | T→A | 7.9% | W147R (TGG→AGG) | mltC → | membrane‑bound lytic murein transglycosylase C |
RA | 3,098,900 | Δ1 bp | 100% | intergenic (+29/‑173) | mltC → / → nupG | membrane‑bound lytic murein transglycosylase C/nucleoside transporter |
RA | 3,106,685 | G→T | 100% | S51Y (TCT→TAT) | yghG ← | secretin (GspDbeta) OM localization lipoprotein pilotin |
RA | 3,110,213 | T→A | 100% | A753A (GCA→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,110,751 | C→A | 100% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 100% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,120,216 | C→A | 100% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,122,356 | G→T | 100% | L242F (TTG→TTT) | glcC → | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
RA | 3,122,778 | A→C | 100% | pseudogene (725/1101 nt) | yghO ← | pseudogene, DNA‑binding transcriptional regulator homology |
RA | 3,134,528 | C→A | 100% | D40Y (GAT→TAT) | hybD ← | maturation protease for hydrogenase 2 |
RA | 3,138,648 | T→A | 6.2% | N325Y (AAC→TAC) | hybO ← | hydrogenase 2, small subunit |
RA | 3,140,030 | T→A | 7.3% | N23Y (AAT→TAT) | yghW ← | DUF2623 family protein |
RA | 3,142,668 | G→T | 100% | L55I (CTC→ATC) | yqhA ← | UPF0114 family putative inner membrane protein |
RA | 3,144,158 | C→A | 100% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
RA | 3,164,230 | C→A | 100% | R130S (CGT→AGT) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
RA | 3,173,669 | G→T | 100% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,176,733 | G→T | 100% | intergenic (+51/+439) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,176,820 | G→T | 100% | intergenic (+138/+352) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,182,647 | G→T | 100% | pseudogene (1868/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,182,732 | T→A | 57.4% | pseudogene (1953/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,184,211 | C→A | 94.4% | S74Y (TCT→TAT) | yqiI → | fimbrial protein |
RA | 3,186,181 | G→C | 79.9% | W205C (TGG→TGC) | yqiJ → | DUF1449 family inner membrane protein |
RA | 3,189,569 | C→A | 100% | D182Y (GAT→TAT) | hldE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
RA | 3,199,743 | C→A | 100% | intergenic (‑128/‑79) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
RA | 3,201,209 | C→A | 100% | F160L (TTC→TTA) | ttdB → | L‑tartrate dehydratase, beta subunit |
RA | 3,205,512 | A→C | 10.8% | L349L (CTA→CTC) | dnaG → | DNA primase |
RA | 3,212,264 | G→T | 57.1% | H58N (CAC→AAC) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
RA | 3,217,289 | A→T | 100% | H433L (CAC→CTC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,224,927 | C→A | 100% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,230,857 | C→G | 100% | A63G (GCC→GGC) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,231,349 | A→C | 100% | Q227P (CAG→CCG) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,238,152 | C→T | 15.0% | intergenic (‑52/‑311) | uxaC ← / → exuT | uronate isomerase/hexuronate transporter |
RA | 3,238,283 | C→A | 100% | intergenic (‑183/‑180) | uxaC ← / → exuT | uronate isomerase/hexuronate transporter |
RA | 3,243,768 | C→T | 100% | intergenic (+33/‑153) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
RA | 3,245,848 | G→T | 100% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
RA | 3,246,619 | Δ1 bp | 94.4% | coding (350/357 nt) | yhaI → | DUF805 family inner membrane protein |
RA | 3,249,474 | C→A | 72.6% | T179T (ACG→ACT) | yhaM ← | putative L‑serine dehydratase alpha chain |
RA | 3,252,258 | C→A | 100% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,254,752 | C→A | 100% | V342V (GTG→GTT) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
RA | 3,258,871 | G→T | 100% | L173I (CTC→ATC) | tdcB ← | L‑threonine dehydratase, catabolic |
RA | 3,261,001 | G→A | 100% | intergenic (+44/‑212) | tdcR → / → yhaB | L‑threonine dehydratase operon activator protein/uncharacterized protein |
RA | 3,263,315 | T→C | 5.3% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,263,409 | C→T | 100% | intergenic (+448/+166) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,266,646 | C→A | 100% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
RA | 3,268,357 | C→A | 100% | intergenic (‑91/‑284) | garP ← / → garD | putative (D)‑galactarate transporter/(D)‑galactarate dehydrogenase |
RA | 3,271,128 | A→C | 100% | T145P (ACC→CCC) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
RA | 3,273,402 | C→T | 15.4% | S377L (TCA→TTA) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
RA | 3,275,210 | A→G | 100% | intergenic (+226/‑125) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
RA | 3,290,970 | A→T | 100% | R176R (CGT→CGA) | yraQ ← | putative inner membrane permease |
RA | 3,295,911 | C→A | 100% | Q22K (CAG→AAG) | yhbV → | U32 peptidase family protein |
RA | 3,296,612 | G→T | 100% | A255A (GCG→GCT) | yhbV → | U32 peptidase family protein |
RA | 3,299,240 | A→C | 100% | intergenic (‑64/+90) | mtr ← / ← deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
RA | 3,302,027 | G→T | 100% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,306,165 | C→A | 91.4% | V125F (GTT→TTT) | rbfA ← | 30s ribosome binding factor |
RA | 3,312,055 | C→A | 100% | G20G (GGC→GGA) | argG → | argininosuccinate synthetase |
RA | 3,314,870 | C→A | 100% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,317,805 | C→A | 94.2% | D156Y (GAT→TAT) | folP ← | 7,8‑dihydropteroate synthase |
RA | 3,320,020 | G→T | 9.1% | P92Q (CCG→CAG) | ftsH ← | protease, ATP‑dependent zinc‑metallo |
RA | 3,332,963 | C→A | 100% | A154A (GCG→GCT) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
RA | 3,334,464 | C→A | 100% | S277R (AGC→AGA) | yrbG → | putative calcium/sodium:proton antiporter |
RA | 3,334,687 | G→T | 100% | A21A (GCG→GCT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
RA | 3,334,940 | T→G | 92.7% | S106A (TCT→GCT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
RA | 3,343,975 | C→A | 100% | noncoding (40/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
RA | 3,347,644 | G→A | 13.6% | intergenic (‑235/‑440) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,347,778 | G→A | 100% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,351,650 | G→T | 100% | E1189D (GAG→GAT) | gltB → | glutamate synthase, large subunit |
RA | 3,354,405 | C→T | 100% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,365,607 | G→T | 100% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,373,441 | A→C | 59.3% | intergenic (‑85/‑109) | yhcM ← / → yhcB | putative AFG1‑like family P‑loop ATPase/DUF1043 family inner membrane‑anchored protein |
RA | 3,373,457 | C→A | 100% | intergenic (‑101/‑93) | yhcM ← / → yhcB | putative AFG1‑like family P‑loop ATPase/DUF1043 family inner membrane‑anchored protein |
RA | 3,373,985 | C→A | 100% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 100% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,385,516 | A→T | 6.0% | intergenic (‑129/+301) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,388,644 | T→A | 7.3% | D325V (GAC→GTC) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,396,082 | G→T | 100% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,403,534 | C→T | 100% | intergenic (+224/‑105) | prmA → / → dusB | methyltransferase for 50S ribosomal subunit protein L11/tRNA‑dihydrouridine synthase B |
RA | 3,404,059 | C→A | 100% | R141S (CGC→AGC) | dusB → | tRNA‑dihydrouridine synthase B |
RA | 3,407,007 | G→A | 100% | intergenic (‑183/‑216) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,407,969 | C→A | 100% | N249K (AAC→AAA) | acrE → | cytoplasmic membrane lipoprotein |
RA | 3,409,856 | A→C | 100% | T489P (ACC→CCC) | acrF → | multidrug efflux system protein |
RA | 3,411,250 | G→T | 100% | E953D (GAG→GAT) | acrF → | multidrug efflux system protein |
RA | 3,415,112 | C→A | 14.9% | G143G (GGC→GGA) | yhdY → | putative amino‑acid transporter subunit |
RA | 3,416,890 | T→G | 5.1% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
RA | 3,422,726 | G→T | 100% | V44V (GTG→GTT) | yrdA → | bacterial transferase hexapeptide domain protein |
RA | 3,424,363 | T→A | 100% | T138S (ACC→TCC) | tsaC ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine‑dependent ADP‑forming ATPase |
RA | 3,440,151 | G→T | 100% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 100% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,832 | T→C | 100% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
RA | 3,445,410 | C→A | 100% | R79L (CGT→CTT) | rplD ← | 50S ribosomal subunit protein L4 |
RA | 3,448,742 | C→A | 100% | E6* (GAA→TAA) | gspA ← | general secretory pathway component, cryptic |
RA | 3,455,867 | C→A | 100% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,455,930 | C→A | 100% | I76I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,459,603 | A→T | 100% | intergenic (+24/+5) | gspO → / ← bfr | bifunctional prepilin leader peptidase/ methylase/bacterioferritin, iron storage and detoxification protein |
RA | 3,466,238 | A→T | 17.0% | V212V (GTT→GTA) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
RA | 3,470,272 | C→A | 100% | V169V (GTG→GTT) | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
RA | 3,471,705 | C→T | 100% | G51D (GGT→GAT) | slyD ← | FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
RA | 3,473,139 | G→T | 100% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,475,255 | C→A | 100% | S203Y (TCT→TAT) | yheS → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 3,479,769 | A→T | 100% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
RA | 3,487,342 | C→T | 100% | intergenic (+234/‑28) | tsgA → / → nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,488,966 | G→C | 100% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,489,397 | C→A | 100% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,498,214 | T→G | 6.8% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,501,571 | C→A | 100% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
RA | 3,504,143 | G→T | 100% | R65S (CGT→AGT) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
RA | 3,507,749 | G→T | 100% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,508,278 | C→A | 6.3% | T47T (ACG→ACT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,509,102 | G→T | 100% | S57R (AGC→AGA) | dam ← | DNA adenine methyltransferase |
RA | 3,512,321 | A→T | 13.0% | S35T (TCC→ACC) | aroK ← | shikimate kinase I |
RA | 3,513,424 | A→T | 100% | V213V (GTT→GTA) | hofQ ← | DNA catabolic putative fimbrial transporter |
RA | 3,519,188 | C→A | 100% | L107L (CTG→CTT) | nudE ← | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,528,406 | G→T | 100% | I274I (ATC→ATA) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
RA | 3,535,370 | C→A | 100% | S535R (AGC→AGA) | feoB → | fused ferrous iron transporter, protein B: GTP‑binding protein/membrane protein |
RA | 3,543,793 | G→T | 15.5% | T680T (ACC→ACA) | malP ← | maltodextrin phosphorylase |
RA | 3,543,959 | G→T | 100% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
JC | 3,547,418 | Δ28 bp | 10.5% | coding (975‑1002/2706 nt) | malT → | mal regulon transcriptional activator |
RA | 3,549,090 | C→A | 80.0% | R883S (CGC→AGC) | malT → | mal regulon transcriptional activator |
RA | 3,561,574 | C→A | 100% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,567,059 | C→A | 100% | intergenic (‑197/+76) | glgB ← / ← asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
RA | 3,571,153 | C→A | 100% | E312* (GAA→TAA) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
RA | 3,575,032 | C→A | 100% | intergenic (+46/‑191) | yhhY → / → yhhZ | putative acetyltransferase/putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
RA | 3,577,827 | A→G | 5.6% | intergenic (+158/‑292) | yrhA → / → yrhB | pseudogene, interrupted by IS1E/stable heat shock chaperone |
RA | 3,582,807 | G→T | 100% | P194Q (CCG→CAG) | ugpE ← | glycerol‑3‑phosphate transporter subunit |
RA | 3,590,636 | G→T | 100% | Y95* (TAC→TAA) | livK ← | leucine transporter subunit |
RA | 3,590,906 | C→A | 100% | A5A (GCG→GCT) | livK ← | leucine transporter subunit |
RA | 3,591,957 | T→G | 100% | V354V (GTA→GTC) | livJ ← | leucine/isoleucine/valine transporter subunit |
RA | 3,594,268 | C→T | 100% | intergenic (‑125/+120) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
RA | 3,596,266 | C→A | 100% | T446T (ACG→ACT) | ftsY ← | Signal Recognition Particle (SRP) receptor |
RA | 3,598,440 | C→A | 100% | N34K (AAC→AAA) | yhhL → | DUF1145 family protein |
RA | 3,601,909 | C→A | 76.4% | T700K (ACG→AAG) | zntA → | zinc, cobalt and lead efflux system |
RA | 3,604,298 | C→A | 9.3% | G266C (GGT→TGT) | yhhS ← | putative arabinose efflux transporter |
RA | 3,607,110 | C→A | 100% | I28I (ATC→ATA) | nikA → | nickel‑binding, heme‑binding periplasmic protein |
RA | 3,612,284 | G→T | 100% | D113Y (GAT→TAT) | nikR → | transcriptional repressor, Ni‑binding |
RA | 3,618,536 | C→A | 100% | R267R (CGG→AGG) | yhhI → | putative transposase |
RA | 3,622,058 | C→A | 100% | D281Y (GAT→TAT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
RA | 3,629,424 | T→A | 100% | intergenic (+171/+144) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
RA | 3,634,060 | A→G | 15.6% | intergenic (+155/‑162) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
RA | 3,638,641 | C→A | 100% | intergenic (‑99/‑104) | prlC ← / → rlmJ | oligopeptidase A/23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,639,239 | G→T | 100% | P165P (CCG→CCT) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,644,531 | G→A | 100% | intergenic (+509/‑120) | arsC → / → yhiS | arsenate reductase/pseudogene |
RA | 3,646,984 | G→T | 100% | pseudogene (394/483 nt) | yhiS → | pseudogene |
RA | 3,649,460 | T→A | 77.7% | K65* (AAA→TAA) | hdeB ← | acid‑resistance protein |
RA | 3,649,797 | C→A | 100% | E102* (GAA→TAA) | hdeA ← | stress response protein acid‑resistance protein |
RA | 3,657,375 | G→A | 100% | P202S (CCT→TCT) | gadW ← | transcriptional activator of gadA and gadBC; repressor of gadX |
RA | 3,659,083 | T→A | 65.1% | N30Y (AAT→TAT) | gadX ← | acid resistance regulon transcriptional activator; autoactivator |
RA | 3,661,610 | A→T | 100% | F313L (TTT→TTA) | yhjA ← | putative cytochrome C peroxidase |
RA | 3,662,660 | T→C | 100% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,663,166 | T→A | 7.1% | F72Y (TTC→TAC) | treF → | cytoplasmic trehalase |
RA | 3,664,901 | C→A | 13.4% | A118A (GCG→GCT) | yhjB ← | putative DNA‑binding transcriptional response regulator |
RA | 3,667,555 | C→A | 92.2% | I278I (ATC→ATA) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
RA | 3,667,959 | C→A | 100% | intergenic (+224/‑187) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/MFS superfamily sugar transport 1 family protein |
RA | 3,675,063 | C→A | 7.1% | A80S (GCC→TCC) | yhjJ ← | putative periplasmic M16 family chaperone |
RA | 3,679,301 | T→G | 100% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 100% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,680,910 | G→T | 100% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
RA | 3,686,345 | C→A | 100% | R751L (CGC→CTC) | bcsA ← | cellulose synthase, catalytic subunit |
RA | 3,692,994 | T→A | 100% | F474Y (TTC→TAC) | bcsG → | DUF3260 family inner membrane protein associated with cellulose production |
RA | 3,693,083 | G→T | 100% | V504F (GTT→TTT) | bcsG → | DUF3260 family inner membrane protein associated with cellulose production |
RA | 3,698,119 | C→A | 100% | M1M (ATG→ATT) † | dppC ← | dipeptide/heme transporter |
RA | 3,698,875 | G→T | 100% | F92L (TTC→TTA) | dppB ← | dipeptide/heme transporter |
RA | 3,711,448 | T→A | 13.3% | L260Q (CTG→CAG) | ghrB → | glyoxylate/hydroxypyruvate reductase B |
RA | 3,716,114 | C→A | 5.3% | A548A (GCG→GCT) | glyS ← | glycine tRNA synthetase, beta subunit |
RA | 3,717,788 | C→A | 100% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
RA | 3,721,485 | T→G | 6.4% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
RA | 3,723,822 | C→A | 11.2% | D102Y (GAT→TAT) | xylA ← | D‑xylose isomerase |
RA | 3,727,580 | C→A | 100% | A167A (GCC→GCA) | xylH → | D‑xylose ABC transporter permease subunit |
RA | 3,736,722 | C→A | 100% | G210G (GGC→GGA) | yiaK → | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
RA | 3,738,431 | C→A | 100% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,751,135 | G→T | 50.5% | S18* (TCA→TAA) | yiaY ← | putative Fe‑containing alcohol dehydrogenase, Pfam00465 family |
RA | 3,755,723 | G→T | 100% | E61* (GAA→TAA) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
RA | 3,761,964 | G→T | 6.7% | R143L (CGA→CTA) | yibG → | TPR‑like repeat protein |
RA | 3,767,000 | G→T | 100% | D454Y (GAC→TAC) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,767,242 | G→T | 12.6% | A534A (GCG→GCT) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,767,410 | G→T | 100% | V590V (GTG→GTT) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,774,460 | G→C | 11.7% | intergenic (+83/‑115) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,774,466 | G→C | 11.4% | intergenic (+89/‑109) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,774,468 | A→C | 7.2% | intergenic (+91/‑107) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,774,518 | A→C | 11.2% | intergenic (+141/‑57) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,783,857 | A→T | 83.4% | I283I (ATT→ATA) | tdh ← | L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
RA | 3,785,915 | G→T | 100% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
RA | 3,789,381 | C→A | 100% | L15I (CTC→ATC) | waaC → | ADP‑heptose:LPS heptosyl transferase I |
RA | 3,805,743 | T→A | 9.2% | L59F (TTA→TTT) | yicR ← | UPF0758 family protein |
RA | 3,810,195 | C→A | 100% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,816,601 | A→T | 100% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 100% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,825,702 | C→A | 100% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,826,247 | A→T | 83.9% | Y551N (TAC→AAC) | yicI ← | putative alpha‑glucosidase |
RA | 3,828,206 | T→A | 100% | S362C (AGT→TGT) | yicJ ← | putative transporter |
RA | 3,830,197 | C→A | 100% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,311 | G→T | 100% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,819 | T→G | 100% | F169L (TTT→TTG) | setC → | putative arabinose efflux transporter |
RA | 3,833,664 | C→A | 79.0% | S30S (TCC→TCA) | yicS → | putative periplasmic protein |
RA | 3,837,532 | C→A | 100% | P70Q (CCG→CAG) | ade → | cryptic adenine deaminase |
RA | 3,839,798 | C→A | 100% | D244Y (GAT→TAT) | uhpT ← | hexose phosphate transporter |
JC | 3,841,409 | +CAACCAG | 100% | coding (576/1320 nt) | uhpC ← | membrane protein regulates uhpT expression |
RA | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,860,327 | C→A | 100% | intergenic (‑70/+42) | ibpB ← / ← ibpA | heat shock chaperone/heat shock chaperone |
RA | 3,860,653 | C→A | 100% | E44* (GAA→TAA) | ibpA ← | heat shock chaperone |
RA | 3,861,553 | C→A | 100% | G373C (GGC→TGC) | yidR ← | DUF3748 family protein |
RA | 3,863,438 | G→T | 100% | M234I (ATG→ATT) | cbrA → | colicin M resistance protein; FAD‑binding protein, putative oxidoreductase |
RA | 3,865,120 | C→A | 100% | intergenic (‑30/+90) | dgoT ← / ← dgoD | D‑galactonate transporter/galactonate dehydratase |
RA | 3,865,863 | T→A | 100% | T166S (ACC→TCC) | dgoD ← | galactonate dehydratase |
RA | 3,871,008 | G→T | 17.7% | intergenic (‑183/+57) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
RA | 3,872,006 | T→A | 100% | S492C (AGC→TGC) | gyrB ← | DNA gyrase, subunit B |
RA | 3,873,695 | C→A | 79.5% | R296L (CGG→CTG) | recF ← | gap repair protein |
RA | 3,874,415 | T→G | 6.3% | Q56P (CAG→CCG) | recF ← | gap repair protein |
RA | 3,880,731 | G→T | 100% | D182Y (GAT→TAT) | mnmE → | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
RA | 3,882,377 | C→A | 78.4% | T96T (ACC→ACA) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
RA | 3,886,759 | A→T | 9.7% | Q212L (CAG→CTG) | yidZ → | putative DNA‑binding transcriptional regulator |
RA | 3,888,274 | C→A | 93.3% | P88Q (CCG→CAG) | chrR → | chromate reductase, Class I, flavoprotein |
RA | 3,890,960 | T→A | 100% | F32Y (TTC→TAC) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
RA | 3,892,304 | C→A | 100% | P150P (CCG→CCT) | yieK ← | putative 6‑phosphogluconolactonase |
RA | 3,899,000 | C→A | 6.5% | intergenic (‑43/+91) | bglF ← / ← bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
RA | 3,899,249 | C→A | 9.7% | E227* (GAA→TAA) | bglG ← | transcriptional antiterminator of the bgl operon |
RA | 3,901,415 | C→A | 100% | P104P (CCG→CCT) | pstB ← | phosphate transporter subunit |
RA | 3,904,553 | T→A | 100% | P111P (CCA→CCT) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
RA | 3,904,977 | A→T | 80.6% | intergenic (‑92/+222) | pstS ← / ← glmS | periplasmic phosphate binding protein, high‑affinity/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,906,384 | G→T | 100% | I215I (ATC→ATA) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,906,459 | G→T | 14.2% | I190I (ATC→ATA) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,908,836 | G→T | 5.9% | intergenic (‑276/+77) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
RA | 3,910,416 | C→A | 100% | R107L (CGT→CTT) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,448 | G→T | 100% | V96V (GTC→GTA) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
RA | 3,910,894 | C→A | 100% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,916,830 | C→A | 100% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,917,554 | C→A | 100% | L480L (CTG→CTT) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
RA | 3,923,028 | C→A | 100% | D476Y (GAC→TAC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,926,831 | G→T | 100% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
RA | 3,927,972 | G→T | 100% | E279* (GAA→TAA) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 3,931,021 | C→A | 100% | A123E (GCG→GAG) | rbsK → | ribokinase |
RA | 3,932,241 | G→T | 13.9% | D219Y (GAT→TAT) | rbsR → | transcriptional repressor of ribose metabolism |
RA | 3,935,100 | G→T | 100% | intergenic (‑413/‑68) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
RA | 3,936,831 | C→A | 100% | noncoding (37/76 nt) | gltU → | tRNA‑Glu |
RA | 3,945,181 | G→T | 100% | pseudogene (280/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
RA | 3,946,256 | A→T | 10.9% | Q138L (CAG→CTG) | ilvE → | branched‑chain amino‑acid aminotransferase |
RA | 3,952,817 | T→G | 8.1% | intergenic (+12/+75) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,954,364 | G→T | 79.6% | D110Y (GAT→TAT) | rep → | DNA helicase and single‑stranded DNA‑dependent ATPase |
RA | 3,958,909:1 | +T | 100% | coding (82/1266 nt) | rhlB ← | ATP‑dependent RNA helicase |
RA | 3,959,351 | G→T | 100% | P77P (CCG→CCT) | trxA → | thioredoxin 1 |
RA | 3,960,036 | G→A | 100% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,966,854 | C→A | 100% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,967,387 | G→T | 13.0% | P140P (CCG→CCT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,967,474 | G→T | 100% | A169A (GCG→GCT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,967,504 | A→C | 11.9% | K179N (AAA→AAC) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,969,710 | G→T | 100% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
RA | 3,970,856 | G→T | 5.2% | G407C (GGC→TGC) | wzxE → | O‑antigen translocase |
RA | 3,972,296 | G→T | 100% | E112D (GAG→GAT) | wzyE → | putative ECA polysaccharide chain elongation protein |
RA | 3,988,075 | T→A | 100% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
RA | 3,990,354 | C→A | 10.6% | H236Q (CAC→CAA) | xerC → | site‑specific tyrosine recombinase |
RA | 3,994,076 | A→T | 100% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
RA | 3,994,247 | A→T | 100% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,996,346 | T→A | 100% | I70F (ATC→TTC) | yigG ← | PRK11371 family inner membrane protein |
RA | 4,009,705 | G→A | 100% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,012,953 | C→A | 73.8% | R247S (CGT→AGT) | ubiE → | bifunctional 2‑octaprenyl‑6‑methoxy‑1,4‑benzoquinone methylase/ S‑adenosylmethionine:2‑DMK methyltransferase |
RA | 4,019,292 | G→T | 5.1% | A315A (GCG→GCT) | ubiD → | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
RA | 4,020,520 | G→T | 18.9% | D212Y (GAT→TAT) | fre → | NAD(P)H‑flavin reductase |
RA | 4,022,430 | C→A | 5.2% | P634P (CCG→CCT) | fadB ← | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 4,024,827 | G→T | 100% | D103Y (GAT→TAT) | pepQ → | proline dipeptidase |
RA | 4,035,421 | G→T | 100% | intergenic (‑62/‑8) | mobA ← / → yihD | molybdopterin‑guanine dinucleotide synthase/DUF1040 protein YihD |
RA | 4,037,484 | T→A | 100% | intergenic (+80/‑75) | dsbA → / → yihF | periplasmic protein disulfide isomerase I/DUF945 family protein |
RA | 4,039,464 | C→T | 100% | D167N (GAT→AAT) | yihG ← | inner membrane protein, inner membrane acyltransferase |
RA | 4,042,128 | A→C | 5.2% | K601N (AAA→AAC) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
RA | 4,045,302 | G→T | 100% | intergenic (+86/‑103) | yihI → / → hemN | activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,046,172 | A→T | 100% | K256N (AAA→AAT) | hemN → | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,056,018 | T→A | 100% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,058,809 | G→T | 100% | I106I (ATC→ATA) | yihO ← | putative transporter |
RA | 4,062,424 | G→T | 100% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,066,133 | T→G | 100% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 100% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,070,543 | G→T | 100% | D57Y (GAT→TAT) | dtd → | D‑tyr‑tRNA(Tyr) deacylase |
RA | 4,074,579 | G→T | 100% | R4S (CGC→AGC) | fdhE ← | formate dehydrogenase formation protein |
RA | 4,075,234 | C→A | 100% | D296Y (GAC→TAC) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
RA | 4,088,850 | C→A | 100% | R93S (CGT→AGT) | rhaR → | transcriptional activator of rhaSR |
RA | 4,094,362 | C→A | 100% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,097,822 | G→T | 100% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,108,175 | C→T | 100% | intergenic (‑157/‑268) | glpF ← / → zapB | glycerol facilitator/FtsZ stabilizer; septal ring assembly factor, stimulates cell division |
RA | 4,112,864 | T→G | 14.2% | Q135P (CAG→CCG) | ftsN ← | essential cell division protein |
RA | 4,122,248 | A→T | 100% | intergenic (+53/‑296) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
RA | 4,124,384 | C→A | 100% | H208N (CAT→AAT) | katG → | catalase‑peroxidase HPI, heme b‑containing |
RA | 4,125,407 | C→A | 100% | H549N (CAT→AAT) | katG → | catalase‑peroxidase HPI, heme b‑containing |
RA | 4,127,022 | T→G | 100% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,135,168 | G→T | 100% | V416L (GTA→TTA) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
RA | 4,143,375 | A→G | 6.0% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,143,544 | C→T | 7.3% | intergenic (‑518/+80) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,150,054 | G→T | 100% | S222Y (TCT→TAT) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,150,645 | A→T | 13.8% | L25Q (CTG→CAG) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,154,402 | A→T | 93.9% | E279V (GAA→GTA) | btuB → | vitamin B12/cobalamin outer membrane transporter |
RA | 4,158,143 | A→T | 43.8% | intergenic (+15/‑157) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
RA | 4,158,149 | T→C | 44.5% | intergenic (+21/‑151) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
RA | 4,158,400 | G→A | 19.0% | intergenic (+25/‑169) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,158,403 | G→T | 18.6% | intergenic (+28/‑166) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,158,404 | A→G | 18.6% | intergenic (+29/‑165) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
RA | 4,163,117 | T→A | 100% | I36I (ATT→ATA) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
RA | 4,172,507 | C→A | 100% | I445I (ATC→ATA) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,145 | A→T | 100% | Q658L (CAG→CTG) | rpoB → | RNA polymerase, beta subunit |
RA | 4,173,179 | G→T | 100% | P669P (CCG→CCT) | rpoB → | RNA polymerase, beta subunit |
RA | 4,176,823 | G→T | 100% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,178,969 | G→T | 100% | R1231L (CGT→CTT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,184,471 | A→T | 92.5% | I519I (ATT→ATA) | thiC ← | phosphomethylpyrimidine synthase |
RA | 4,190,061 | T→A | 94.0% | intergenic (+39/‑148) | yjaG → / → hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
RA | 4,193,578 | G→T | 100% | D111Y (GAT→TAT) | zraR → | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
RA | 4,207,552 | G→T | 100% | M172I (ATG→ATT) | aceA → | isocitrate lyase |
RA | 4,210,753 | C→A | 100% | E555* (GAA→TAA) | arpA ← | ankyrin repeat protein |
RA | 4,211,576 | G→T | 100% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
RA | 4,211,751 | G→T | 5.0% | A222E (GCA→GAA) | arpA ← | ankyrin repeat protein |
RA | 4,211,803 | G→A | 100% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,214,563 | A→T | 100% | T270S (ACC→TCC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,214,809 | G→T | 100% | E352* (GAA→TAA) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,219,790 | A→T | 93.0% | L94Q (CTG→CAG) | pepE ← | (alpha)‑aspartyl dipeptidase |
RA | 4,219,858 | G→T | 72.4% | V71V (GTC→GTA) | pepE ← | (alpha)‑aspartyl dipeptidase |
RA | 4,221,214 | C→A | 93.4% | intergenic (+60/+73) | rluF → / ← yjbD | 23S rRNA pseudouridine(2604) synthase/DUF3811 family protein |
RA | 4,224,391 | G→T | 100% | V236F (GTT→TTT) | pgi → | glucosephosphate isomerase |
RA | 4,225,741 | G→T | 100% | intergenic (+406/‑93) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
RA | 4,225,841 | A→C | 100% | K3T (AAA→ACA) | yjbE → | extracellular polysaccharide production threonine‑rich protein |
RA | 4,230,913 | A→T | 100% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,235,869 | G→T | 100% | A160E (GCG→GAG) | malE ← | maltose transporter subunit |
RA | 4,235,916 | G→T | 100% | N144K (AAC→AAA) | malE ← | maltose transporter subunit |
RA | 4,236,666 | C→A | 100% | intergenic (‑319/‑46) | malE ← / → malK | maltose transporter subunit/fused maltose transport subunit, ATP‑binding component of ABC superfamily/regulatory protein |
RA | 4,242,509 | C→T | 100% | L26F (CTC→TTC) | ubiC → | chorismate‑‑pyruvate lyase |
RA | 4,244,663 | G→T | 78.4% | H578N (CAC→AAC) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
RA | 4,245,537 | G→T | 100% | N286K (AAC→AAA) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
RA | 4,247,640 | G→T | 6.5% | D200Y (GAC→TAC) | lexA → | transcriptional repressor of SOS regulon |
RA | 4,249,117 | G→T | 100% | intergenic (+68/‑48) | dinF → / → yjbJ | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein/stress‑induced protein, UPF0337 family |
RA | 4,251,044 | T→G | 7.3% | L173R (CTG→CGG) | yjbM → | uncharacterized protein |
RA | 4,252,556 | A→T | 5.6% | L320F (TTA→TTT) | dusA → | tRNA‑dihydrouridine synthase A |
RA | 4,255,009 | A→T | 100% | V256V (GTA→GTT) | dnaB → | replicative DNA helicase |
RA | 4,265,064 | C→A | 100% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,265,089 | T→A | 100% | intergenic (‑120/‑310) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,266,318 | G→T | 100% | R307L (CGT→CTT) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,269,251 | A→T | 13.7% | Q282L (CAG→CTG) | yjcD → | inner membrane putative guanine permease |
RA | 4,272,352 | T→C | 92.1% | T218A (ACT→GCT) | yjcF ← | pentapeptide repeats protein |
RA | 4,274,641 | A→C | 10.2% | Y64D (TAC→GAC) | actP ← | acetate transporter |
RA | 4,274,926 | A→C | 100% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,275,142 | C→A | 100% | intergenic (‑1/+199) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
RA | 4,275,862 | C→A | 100% | D480Y (GAT→TAT) | acs ← | acetyl‑CoA synthetase |
RA | 4,279,816 | G→T | 100% | A27A (GCG→GCT) | nrfC → | formate‑dependent nitrite reductase, 4Fe4S subunit |
RA | 4,286,119 | A→C | 5.2% | intergenic (+397/+134) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,288,086 | G→T | 100% | F366L (TTC→TTA) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
RA | 4,289,247 | G→A | 79.5% | intergenic (‑64/+134) | fdhF ← / ← mdtP | formate dehydrogenase‑H, selenopolypeptide subunit/outer membrane factor of efflux pump |
RA | 4,290,080 | G→T | 100% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,297,485 | G→C | 100% | G44G (GGC→GGG) | alsK ← | D‑allose kinase |
RA | 4,297,846 | C→A | 100% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,303,614 | T→A | 100% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,309,746 | G→T | 5.2% | V245V (GTC→GTA) | phnI ← | ribophosphonate triphosphate synthase complex putative catalytic subunit |
RA | 4,315,765 | A→G | 5.5% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
RA | 4,318,517 | A→T | 100% | T522T (ACA→ACT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
RA | 4,329,774 | C→A | 100% | D189Y (GAC→TAC) | adiA ← | arginine decarboxylase |
RA | 4,330,426 | Δ1 bp | 100% | intergenic (‑88/+111) | adiA ← / ← melR | arginine decarboxylase/melibiose operon transcriptional regulator; autoregulator |
RA | 4,337,927 | A→T | 75.2% | V212E (GTA→GAA) | dcuB ← | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
RA | 4,341,023 | A→T | 100% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
RA | 4,347,596 | A→T | 23.4% | F280Y (TTC→TAC) | cadA ← | lysine decarboxylase, acid‑inducible |
RA | 4,350,223 | G→A | 100% | A510V (GCT→GTT) | cadC ← | cadBA operon transcriptional activator |
RA | 4,356,198 | A→T | 12.2% | S131S (TCT→TCA) | dcuA ← | C4‑dicarboxylate antiporter |
RA | 4,358,390 | A→C | 100% | intergenic (‑246/‑91) | aspA ← / → fxsA | aspartate ammonia‑lyase/suppressor of F exclusion of phage T7 |
RA | 4,358,920 | G→T | 100% | R147L (CGC→CTC) | fxsA → | suppressor of F exclusion of phage T7 |
RA | 4,359,686 | C→A | 51.3% | E182* (GAA→TAA) | yjeH ← | putative transporter |
RA | 4,366,322 | A→C | 100% | intergenic (+63/‑48) | ecnA → / → ecnB | entericidin A membrane lipoprotein, antidote entericidin B/entericidin B membrane lipoprotein |
RA | 4,376,178 | C→A | 100% | E1004* (GAA→TAA) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,378,778 | G→T | 100% | S137* (TCG→TAG) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,381,504 | T→A | 100% | I28I (ATT→ATA) | orn → | oligoribonuclease |
RA | 4,382,218 | C→A | 100% | noncoding (42/76 nt) | glyV → | tRNA‑Gly |
RA | 4,388,439 | T→A | 94.0% | V404E (GTG→GAG) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,388,902 | G→T | 100% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,394,875 | G→T | 100% | A124A (GCG→GCT) | purA → | adenylosuccinate synthetase |
RA | 4,396,598 | A→T | 100% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,400,699 | G→T | 12.6% | V110V (GTG→GTT) | yjfJ → | PspA/IM30 family protein |
RA | 4,402,665 | T→G | 6.5% | G154G (GGT→GGG) | yjfM → | DUF1190 family protein |
RA | 4,402,850 | G→T | 100% | L2L (CTG→CTT) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,404,169 | G→T | 100% | A26A (GCG→GCT) | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
RA | 4,405,730 | G→T | 100% | intergenic (+13/+104) | aidB → / ← yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein |
RA | 4,406,553 | C→A | 100% | R12L (CGG→CTG) | bsmA ← | bioflm peroxide resistance protein |
RA | 4,410,964 | A→C | 100% | I390L (ATC→CTC) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
RA | 4,412,786 | G→T | 100% | E42* (GAA→TAA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
RA | 4,417,122 | G→T | 100% | R40S (CGT→AGT) | yjfZ ← | uncharacterized protein |
RA | 4,417,551 | A→C | 100% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,427,647 | G→A | 100% | D42N (GAT→AAT) | ytfI → | uncharacterized protein |
RA | 4,428,092 | G→T | 100% | G190V (GGA→GTA) | ytfI → | uncharacterized protein |
RA | 4,432,031 | G→A | 100% | intergenic (‑38/‑168) | msrA ← / → tamA | methionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit |
RA | 4,434,260 | C→A | 100% | P111H (CCT→CAT) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
RA | 4,445,338 | T→G | 10.8% | K30T (AAA→ACA) | fbp ← | fructose‑1,6‑bisphosphatase I |
RA | 4,445,719 | A→T | 100% | T40S (ACC→TCC) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
RA | 4,456,233 | G→T | 100% | I277I (ATC→ATA) | treR ← | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
RA | 4,457,499 | C→A | 100% | R20S (CGT→AGT) | mgtA → | magnesium transporter |
RA | 4,458,254 | T→A | 100% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 100% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,458,948 | G→T | 100% | D503Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,465,936 | T→A | 100% | L228* (TTA→TAA) | yjgL → | uncharacterized protein |
RA | 4,468,165 | A→G | 100% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
RA | 4,469,550 | G→A | 100% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 100% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,873 | G→T | 100% | R928S (CGT→AGT) | valS ← | valyl‑tRNA synthetase |
RA | 4,471,930 | T→A | 100% | P575P (CCA→CCT) | valS ← | valyl‑tRNA synthetase |
RA | 4,480,139 | G→T | 100% | A273E (GCG→GAG) | idnR ← | transcriptional repressor, 5‑gluconate‑binding |
RA | 4,493,435 | T→C | 100% | intergenic (‑187/‑440) | insG ← / → yjhB | IS4 transposase/putative transporter |
RA | 4,494,721 | G→A | 100% | A283T (GCC→ACC) | yjhB → | putative transporter |
RA | 4,495,859 | T→G | 100% | D252E (GAT→GAG) | yjhC → | putative oxidoreductase |
RA | 4,505,141 | G→T | 100% | R452S (CGT→AGT) | fecA ← | ferric citrate outer membrane transporter |
RA | 4,512,693 | T→A | 100% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,520,701 | G→T | 100% | G256G (GGC→GGA) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
RA | 4,523,001 | T→A | 100% | intergenic (‑1/+55) | yjhP ← / ← yjhQ | putative methyltransferase/putative acetyltransferase |
RA | 4,525,234 | G→A | 100% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,529,741 | C→T | 6.2% | intergenic (‑423/‑1033) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,143 | A→T | 100% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,541,449 | A→T | 100% | intergenic (‑336/‑4) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
RA | 4,543,413 | G→T | 17.4% | A232A (GCG→GCT) | uxuB → | D‑mannonate oxidoreductase, NAD‑dependent |
RA | 4,545,107 | G→T | 6.1% | D239Y (GAT→TAT) | uxuR → | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
RA | 4,545,608 | C→A | 100% | R177I (AGA→ATA) | yjiC ← | uncharacterized protein |
RA | 4,547,818 | C→A | 100% | D97Y (GAT→TAT) | hypT ← | hypochlorite‑responsive transcription factor |
RA | 4,548,084 | A→T | 100% | L8* (TTG→TAG) | hypT ← | hypochlorite‑responsive transcription factor |
RA | 4,555,156 | G→T | 100% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,562,043 | C→A | 100% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,562,736 | A→C | 8.8% | pseudogene (506/1503 nt) | yjiT → | pseudogene |
RA | 4,567,278 | G→T | 100% | I166I (ATC→ATA) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
RA | 4,571,233 | G→A | 100% | S16F (TCT→TTT) | hsdS ← | specificity determinant for hsdM and hsdR |
RA | 4,572,520 | A→T | 100% | Y116N (TAC→AAC) | hsdM ← | DNA methyltransferase M |
RA | 4,584,255 | A→C | 100% | L95L (CTT→CTG) | yjjL ← | L‑galactonate transporter |
RA | 4,584,381 | G→T | 100% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,584,756 | A→T | 100% | *305K (TAA→AAA) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,584,775 | C→A | 100% | E298D (GAG→GAT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,585,213 | G→T | 14.3% | F152L (TTC→TTA) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,585,338 | A→T | 100% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,588,180 | G→T | 100% | S360* (TCA→TAA) | opgB ← | phosphoglycerol transferases I and II |
RA | 4,589,130 | G→T | 100% | I43I (ATC→ATA) | opgB ← | phosphoglycerol transferases I and II |
RA | 4,591,139 | C→A | 100% | D66Y (GAT→TAT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |
RA | 4,596,243 | T→A | 100% | intergenic (‑25/+243) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
RA | 4,596,487 | T→A | 52.8% | *344L (TAA→TTA) | rsmC ← | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
RA | 4,600,972 | G→T | 100% | intergenic (+152/‑241) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
RA | 4,615,947 | G→T | 100% | E73D (GAG→GAT) | radA → | DNA repair protein |
RA | 4,617,341 | C→A | 100% | F70L (TTC→TTA) | nadR → | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
RA | 4,625,288 | T→C | 100% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
RA | 4,630,770 | G→T | 100% | T4T (ACG→ACT) | yjtD → | putative methyltransferase |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373857 | 375112 | 1256 | 167 [164] | [166] 168 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 1191672 | 1206964 | 15293 | 167 [166] | [166] 168 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfI,ymfJ,cohE,croE,ymfL,ymfM,oweE,aaaE,ymfR,beeE,jayE,ymfQ,stfP,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
* | * | ÷ | CP009273 | 4100580 | 4101527 | 948 | 167 [166] | [166] 169 | [cdh]–tpiA | [cdh],tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 213 (0.760) | 185 (0.660) | 112/278 | NT | 46.5% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 15444 (58.300) +TTAATTAA |
195/262 | NT | 98.1% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 318 (1.130) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 321 (1.140) | 10321 (55.050) +46 bp |
186/186 | NT | 98.1% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 274 (0.970) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 360652 = | 321 (1.140) | 4919 (26.240) +46 bp |
186/186 | NT | 96.1% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 274 (0.970) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | = 361823 | 318 (1.130) | 50 (0.190) +TTAATTAA |
6/262 | NT | 15.4% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
? | CP009273 | 4033991 = | 267 (0.950) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 229 (0.810) | 130/278 | NT | 99.1% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 2 (0.010) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 286 (1.020) | 148/278 | NT | 99.7% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 1 (0.000) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 692319 = | 232 (0.830) | 36 (0.140) +GAAGAAACAATC |
5/254 | NT | 13.9% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
? | CP009273 | = 692590 | 257 (0.910) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
* | ? | CP009273 | 1635219 = | 0 (0.000) | 212 (0.760) | 131/274 | NT | 100% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 0 (0.000) | 260 (0.920) | 144/278 | NT | 100% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 2063756 | NA (NA) | 10 (0.040) | 7/272 | NT | NA | pseudogene (6/205 nt) | yoeA | CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion |
? | CP009273 | 2989723 = | NA (NA) | noncoding (1328/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 2811301 | 180 (0.640) | 10 (0.040) | 9/238 | NT | 5.8% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
? | CP009273 | 2811851 = | 169 (0.700) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
* | ? | CP009273 | 3179455 = | NA (NA) | 19 (0.070) | 17/278 | NT | 7.3% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
? | CP009273 | = 4346539 | 243 (0.860) | coding (1896/2148 nt) | cadA | lysine decarboxylase, acid‑inducible | |||||
* | ? | CP009273 | = 3180783 | NA (NA) | 294 (1.060) | 154/274 | NT | 95.8% | pseudogene (4/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | = 3833569 | 13 (0.050) | intergenic (‑216/‑6) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein | |||||
* | ? | CP009273 | 3744959 = | 223 (0.790) | 277 (0.990) | 148/278 | NT | 51.1% | coding (270/741 nt) | yiaT | putative outer membrane protein |
? | CP009273 | = 3752673 | 307 (1.090) | coding (549/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
* | ? | CP009273 | 3833562 = | 15 (0.050) | 236 (0.850) | 136/276 | NT | 94.1% | intergenic (‑209/‑13) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |