breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 5,144 | G→A | 34.1% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 7,905 | A→C | 20.5% | Y19D (TAC→GAC) | yaaJ ← | putative transporter |
RA | 8,137 | G→T | 10.0% | intergenic (‑178/‑101) | yaaJ ← / → talB | putative transporter/transaldolase B |
RA | 10,444 | G→T | 49.2% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 11,676 | G→T | 6.1% | N37K (AAC→AAA) | yaaI ← | UPF0412 family protein |
RA | 13,308 | G→T | 5.3% | L382L (CTG→CTT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 29,139 | G→T | 25.4% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 34,496 | T→A | 12.4% | L66Q (CTG→CAG) | caiF → | cai operon transcriptional activator |
RA | 43,364 | G→T | 10.9% | P59P (CCG→CCT) | fixB → | putative electron transfer flavoprotein, NAD/FAD‑binding domain and ETFP adenine nucleotide‑binding domain‑like protein |
RA | 47,560 | G→T | 6.4% | T105T (ACG→ACT) | kefF → | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent |
RA | 47,837 | G→T | 8.7% | A23A (GCG→GCT) | kefC → | potassium:proton antiporter |
RA | 56,677 | G→T | 32.8% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 66,606:1 | +T | 6.0% | intergenic (‑74/‑268) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
RA | 72,392 | G→T | 11.0% | F465L (TTC→TTA) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
RA | 87,619 | G→A | 5.8% | R34Q (CGA→CAA) | ftsL → | membrane bound cell division protein at septum containing leucine zipper motif |
RA | 101,236 | G→T | 6.8% | A256A (GCG→GCT) | ftsA → | ATP‑binding cell division protein involved in recruitment of FtsK to Z ring |
RA | 104,042 | A→T | 5.7% | intergenic (+81/‑150) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
RA | 104,948 | A→T | 32.4% | E61D (GAA→GAT) | secA → | preprotein translocase subunit, ATPase |
RA | 105,563 | C→A | 13.4% | D266E (GAC→GAA) | secA → | preprotein translocase subunit, ATPase |
RA | 118,828 | G→T | 20.9% | D84Y (GAT→TAT) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 118,873 | G→T | 61.7% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 119,002 | G→T | 12.1% | D142Y (GAT→TAT) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 123,870 | G→T | 23.6% | P563P (CCG→CCT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
RA | 127,629 | G→T | 5.3% | P40Q (CCG→CAG) | yacH ← | uncharacterized protein |
RA | 142,460 | T→A | 55.1% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 147,946 | G→T | 14.3% | I47I (ATC→ATA) | yadK ← | putative fimbrial‑like adhesin protein |
RA | 149,502 | G→T | 5.2% | V804V (GTC→GTA) | htrE ← | putative outer membrane usher protein |
RA | 153,472 | G→T | 28.9% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 157,178 | C→A | 20.8% | intergenic (‑87/+91) | dksA ← / ← sfsA | transcriptional regulator of rRNA transcription, DnaK suppressor protein/sugar fermentation stimulation protein A |
RA | 158,287 | C→A | 52.1% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 158,967 | C→A | 19.1% | H126N (CAT→AAT) | hrpB → | putative ATP‑dependent helicase |
RA | 161,068 | A→C | 30.9% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
RA | 161,171 | G→T | 14.4% | intergenic (+150/‑46) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
RA | 177,994 | C→T | 8.3% | V208V (GTC→GTT) | degP → | serine endoprotease (protease Do), membrane‑associated |
RA | 188,863 | T→A | 9.2% | D174E (GAT→GAA) | pyrH → | uridylate kinase |
RA | 198,022 | C→A | 21.5% | R189S (CGT→AGT) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
RA | 214,044 | G→T | 7.6% | R407S (CGT→AGT) | proS ← | prolyl‑tRNA synthetase |
JC | 216,968 | Δ3 bp | 15.3% | coding (446‑448/816 nt) | metQ ← | DL‑methionine transporter subunit |
RA | 230,561 | G→A | 5.3% | P237S (CCT→TCT) | gloB ← | hydroxyacylglutathione hydrolase |
RA | 232,860 | G→T | 67.1% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 233,053 | A→C | 18.9% | D167A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 234,984 | G→T | 13.6% | I80I (ATC→ATA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,990 | G→T | 16.8% | F78L (TTC→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 234,994 | G→T | 26.1% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,005 | C→A | 12.2% | T73T (ACG→ACT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,010 | G→T | 26.8% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,019 | C→A | 26.5% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,022 | G→T | 27.2% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,036 | G→T | 16.6% | S63Y (TCC→TAC) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 238,195 | G→T | 38.7% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 241,630 | G→T | 7.9% | Y221* (TAC→TAA) | yafK ← | L,D‑transpeptidase‑related protein |
RA | 241,773 | A→T | 11.0% | Y174N (TAC→AAC) | yafK ← | L,D‑transpeptidase‑related protein |
RA | 248,470 | A→C | 13.6% | intergenic (+30/‑22) | dinB → / → yafN | DNA polymerase IV/antitoxin of the YafO‑YafN toxin‑antitoxin system |
RA | 249,629 | G→A | 9.9% | R145Q (CGA→CAA) | yafP → | putative acyl‑CoA transferase |
RA | 281,469 | A→T | 8.6% | T122S (ACC→TCC) | yagG → | CP4‑6 prophage; putative sugar transporter |
RA | 295,695 | T→G | 15.8% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 301,808 | C→A | 5.0% | E241* (GAA→TAA) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 306,510 | G→A | 14.2% | R180W (CGG→TGG) | ecpR ← | putative transcriptional regulator for the ecp operon |
RA | 307,398 | G→A | 6.1% | intergenic (‑351/‑425) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
RA | 312,532 | G→A | 53.3% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
JC JC | 312,806 | IS2 (+) +5 bp | 14.0% | pseudogene (71‑75/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 320,920 | G→A | 33.6% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 325,936 | A→T | 7.3% | K255* (AAG→TAG) | betT → | choline transporter of high affinity |
RA | 334,250 | G→T | 15.9% | R72L (CGT→CTT) | yahG → | DUF1116 family protein |
RA | 341,060 | C→A | 11.0% | intergenic (+358/‑55) | yahL → / → yahM | uncharacterized protein/uncharacterized protein |
RA | 345,353 | A→G | 5.4% | intergenic (+70/‑370) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 351,359 | G→T | 16.0% | G243C (GGT→TGT) | codB → | cytosine transporter |
RA | 351,447 | T→A | 18.2% | L272Q (CTG→CAG) | codB → | cytosine transporter |
RA | 353,357 | A→T | 5.7% | intergenic (+192/+145) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 353,486 | A→T | 9.5% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 353,489 | C→T | 8.9% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
RA | 353,517 | T→C | 5.4% | G295G (GGA→GGG) | cynR ← | transcriptional activator of cyn operon; autorepressor |
RA | 359,028 | C→A | 9.8% | pseudogene (1039/1125 nt) | lacZ ← | pseudogene, truncated |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
JC | 361,139 | +GCCA | 11.3% | coding (605/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 31.0% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 372,966 | G→T | 6.9% | intergenic (+199/+25) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
RA | 376,532 | C→A | 18.5% | pseudogene (184/416 nt) | yaiX ← | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
RA | 379,943 | C→T | 8.1% | G44R (GGA→AGA) | yaiS ← | putative PIG‑L family deacetylase |
RA | 379,966 | G→A | 12.6% | S36L (TCG→TTG) | yaiS ← | putative PIG‑L family deacetylase |
RA | 395,611 | C→A | 9.8% | D257Y (GAC→TAC) | ddlA ← | D‑alanine‑D‑alanine ligase A |
RA | 402,340 | G→T | 53.1% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 404,844 | T→G | 7.9% | K211T (AAA→ACA) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
RA | 406,075 | C→A | 51.4% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 411,027 | G→T | 54.4% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 419,663 | G→T | 7.5% | E564* (GAA→TAA) | malZ → | maltodextrin glucosidase |
RA | 433,551 | G→T | 49.0% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 434,663 | A→C | 48.9% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 28.3% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 437,672 | T→A | 30.9% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 442,299 | G→T | 13.4% | S288* (TCG→TAG) | cyoE ← | protoheme IX farnesyltransferase |
RA | 443,933 | C→T | 6.9% | D62N (GAC→AAC) | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
RA | 456,588 | G→T | 56.2% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 461,641 | G→A | 11.1% | V376V (GTC→GTT) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
RA | 473,180 | T→A | 11.3% | K298N (AAA→AAT) | ylaB ← | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 474,138 | G→T | 59.1% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 479,244 | C→A | 32.5% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 52.7% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 488,062 | A→C | 5.9% | Q172P (CAA→CCA) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
RA | 495,504 | A→T | 9.0% | intergenic (‑75/‑77) | aes ← / → gsk | acetyl esterase/inosine/guanosine kinase |
RA | 505,336 | C→T | 12.1% | E500E (GAG→GAA) | copA ← | copper transporter |
RA | 511,415 | G→A | 8.0% | G14E (GGA→GAA) | fetA → | iron exporter, ATP‑binding subunit, ABC transporter FetAB subunit; peroxide resistance protein |
RA | 513,720 | T→C | 15.0% | I6V (ATT→GTT) | ybbN ← | DnaK co‑chaperone, thioredoxin‑like protein |
RA | 525,424 | T→C | 15.1% | pseudogene (49/357 nt) | ylbG ← | pseudogene, DNA‑binding transcriptional regulator homology |
RA | 530,466 | C→A | 55.1% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 542,200 | Δ1 bp | 27.4% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 546,491 | G→T | 55.1% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 56.3% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 564,590 | G→T | 5.2% | G78V (GGA→GTA) | ybcK → | DLP12 prophage; putative recombinase |
RA | 565,317 | G→A | 5.4% | A320A (GCG→GCA) | ybcK → | DLP12 prophage; putative recombinase |
RA | 579,710 | G→A | 9.9% | A192T (GCA→ACA) | appY → | global transcriptional activator; DLP12 prophage |
RA | 581,203 | A→T | 8.3% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 583,341 | T→G | 61.9% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 592,124 | A→T | 6.6% | I357F (ATT→TTT) | cusC → | copper/silver efflux system, outer membrane component |
RA | 595,736 | C→A | 9.3% | R523S (CGT→AGT) | cusA → | copper/silver efflux system, membrane component |
RA | 596,756 | G→T | 8.6% | E863* (GAG→TAG) | cusA → | copper/silver efflux system, membrane component |
RA | 599,256 | C→T | 5.4% | A288A (GCG→GCA) | ybdG ← | mechanosensitive channel protein, miniconductance |
RA | 601,154 | T→A | 11.4% | L63F (TTA→TTT) | ybdF ← | DUF419 family protein |
RA | 603,481 | A→C | 6.7% | intergenic (+37/‑40) | hokE → / → insL1 | toxic polypeptide, small/IS186 transposase |
RA | 607,660 | G→T | 9.1% | R97R (CGC→CGA) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 607,931 | G→A | 58.1% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 608,174 | G→A | 21.5% | intergenic (‑224/‑19) | fepA ← / → fes | iron‑enterobactin outer membrane transporter/enterobactin/ferric enterobactin esterase |
RA | 620,885 | A→T | 5.4% | H182L (CAT→CTT) | entC → | isochorismate synthase 1 |
RA | 625,362 | G→T | 6.5% | G5W (GGG→TGG) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 625,363 | G→T | 7.5% | G5V (GGG→GTG) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 625,364 | G→A | 22.7% | G5G (GGG→GGA) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 627,794 | G→A | 5.6% | D53N (GAC→AAC) | ybdD → | DUF466 family protein |
RA | 632,406 | T→A | 19.4% | K223N (AAA→AAT) | ybdO ← | putative DNA‑binding transcriptional regulator |
RA | 635,464 | G→T | 16.3% | E86* (GAG→TAG) | ahpF → | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
RA | 639,231 | G→A | 47.1% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 641,886 | C→A | 15.1% | E51* (GAG→TAG) | citT ← | citrate:succinate antiporter |
RA | 646,796 | C→A | 6.9% | D173Y (GAC→TAC) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
RA | 647,422 | G→T | 32.1% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 50.3% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 651,481 | G→A | 5.3% | intergenic (‑57/‑532) | dcuC ← / → pagP | anaerobic C4‑dicarboxylate transport/phospholipid:lipid A palmitoyltransferase |
RA | 651,752 | G→A | 5.6% | intergenic (‑328/‑261) | dcuC ← / → pagP | anaerobic C4‑dicarboxylate transport/phospholipid:lipid A palmitoyltransferase |
RA | 652,865 | Δ1 bp | 51.3% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 660,816 | G→A | 16.2% | V318V (GTC→GTT) | mrdB ← | cell wall shape‑determining protein |
RA | 661,164 | C→A | 5.8% | L202L (CTG→CTT) | mrdB ← | cell wall shape‑determining protein |
RA | 662,631 | C→A | 27.6% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 668,351 | G→T | 6.3% | P630Q (CCG→CAG) | leuS ← | leucyl‑tRNA synthetase |
RA | 672,092 | C→T | 7.6% | intergenic (‑89/‑75) | ybeQ ← / → ybeR | Sel1 family TPR‑like repeat protein/uncharacterized protein |
RA | 685,713 | G→T | 5.5% | R209S (CGT→AGT) | lnt ← | apolipoprotein N‑acyltransferase |
RA | 693,065 | A→T | 10.8% | C523* (TGT→TGA) | asnB ← | asparagine synthetase B |
RA | 705,588 | C→A | 37.1% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 706,766 | C→T | 5.7% | L52L (CTG→CTA) | fldA ← | flavodoxin 1 |
RA | 707,409 | C→A | 20.5% | intergenic (‑55/+85) | ybfE ← / ← ybfF | LexA‑regulated protein, CopB family/acyl‑CoA esterase |
RA | 708,018 | C→A | 6.6% | D81Y (GAC→TAC) | ybfF ← | acyl‑CoA esterase |
RA | 731,316 | A→T | 6.4% | T71S (ACA→TCA) | ybfC → | putative periplasmic protein |
RA | 738,149 | G→A | 5.1% | intergenic (‑137/‑134) | dtpD ← / → ybgI | dipeptide and tripeptide permease D/NIF3 family metal‑binding protein |
RA | 754,572 | G→T | 58.3% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 757,524 | C→A | 9.7% | R183S (CGC→AGC) | sucB → | dihydrolipoyltranssuccinase |
RA | 759,000 | C→A | 58.4% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 760,181 | G→T | 16.0% | P182P (CCG→CCT) | sucD → | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit |
RA | 775,513 | C→T | 7.1% | Q154* (CAG→TAG) | ybgF → | periplasmic TolA‑binding protein |
RA | 788,902 | G→T | 42.6% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 789,274 | G→T | 8.0% | intergenic (‑30/+38) | modF ← / ← modE | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components/transcriptional repressor for the molybdenum transport operon modABC |
RA | 800,779 | G→T | 52.7% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 828,374 | G→T | 56.7% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 832,574 | G→T | 14.4% | T256T (ACG→ACT) | ybiC → | putative dehydrogenase |
RA | 839,518 | A→T | 7.9% | I473I (ATT→ATA) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
RA | 864,209 | G→A | 6.4% | A412T (GCT→ACT) | gsiA → | glutathione transporter ATP‑binding protein, ABC superfamily |
RA | 874,768 | G→T | 11.6% | E191* (GAA→TAA) | yliI → | soluble aldose sugar dehydrogenase |
RA | 876,447 | G→A | 52.3% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 879,085 | G→T | 49.4% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 882,441 | A→T | 10.5% | S119T (TCT→ACT) | ybjJ ← | putative transporter |
RA | 889,030 | A→T | 7.5% | intergenic (+141/‑210) | ybjN → / → potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine transporter subunit: periplasmic‑binding component of ABC superfamily |
RA | 890,514 | G→T | 5.2% | R23L (CGC→CTC) | potG → | putrescine transporter subunit: ATP‑binding component of ABC superfamily |
RA | 909,274 | C→A | 6.5% | intergenic (‑4/+140) | hcp ← / ← ybjE | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases/putative transporter |
RA | 910,654 | C→G | 5.0% | intergenic (‑341/+154) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
JC JC | 919,057 | IS5 (–) +4 bp | 18.6% | coding (338‑341/2277 nt) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
RA | 920,469 | G→T | 11.9% | G584C (GGT→TGT) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
RA | 922,710 | G→A | 5.1% | S60L (TCG→TTG) | aat ← | leucyl/phenylalanyl‑tRNA‑protein transferase |
RA | 923,312 | G→T | 9.3% | S447* (TCG→TAG) | cydC ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 924,521 | G→T | 5.9% | S44* (TCG→TAG) | cydC ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 930,998 | G→A | 7.7% | A773A (GCG→GCA) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
RA | 932,915 | C→A | 7.8% | R30S (CGC→AGC) | lolA → | lipoprotein chaperone |
RA | 935,943 | C→A | 9.2% | R354S (CGT→AGT) | serS → | seryl‑tRNA synthetase, also charges selenocysteinyl‑tRNA with serine |
RA | 939,763 | C→A | 7.7% | S92* (TCG→TAG) | dmsC → | dimethyl sulfoxide reductase, anaerobic, subunit C |
RA | 947,211 | C→A | 15.9% | P600P (CCG→CCT) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
RA | 955,629 | T→A | 8.8% | intergenic (+78/‑91) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 960,265 | T→G | 8.7% | F164V (TTT→GTT) | ycaI → | ComEC family inner membrane protein |
RA | 960,909 | C→A | 5.9% | V378V (GTC→GTA) | ycaI → | ComEC family inner membrane protein |
RA | 961,946 | T→A | 7.3% | F724Y (TTT→TAT) | ycaI → | ComEC family inner membrane protein |
RA | 968,415 | G→T | 55.2% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 971,532 | A→T | 17.6% | Q152L (CAG→CTG) | mukE → | chromosome condensin MukBEF, MukE localization factor |
RA | 982,037 | G→T | 6.1% | T134T (ACC→ACA) | ompF ← | outer membrane porin 1a (Ia;b;F) |
RA | 1,006,218 | G→T | 12.6% | E267* (GAG→TAG) | uup → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 1,011,972 | A→T | 15.6% | intergenic (‑46/+23) | fabA ← / ← ycbZ | beta‑hydroxydecanoyl thioester dehydrase/putative peptidase |
RA | 1,028,922 | C→A | 6.7% | F71L (TTC→TTA) | hyaB → | hydrogenase 1, large subunit |
RA | 1,029,664 | C→T | 6.2% | L319L (CTG→TTG) | hyaB → | hydrogenase 1, large subunit |
RA | 1,050,246 | G→T | 20.2% | L463L (CTC→CTA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,058,961 | C→A | 5.4% | A91S (GCC→TCC) | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
RA | 1,071,619 | G→A | 7.1% | A907V (GCC→GTC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,071,939 | C→A | 6.5% | L800L (CTG→CTT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,077,911 | A→C | 47.5% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,087,844 | G→A | 8.8% | intergenic (‑99/‑488) | pgaA ← / → ycdT | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/diguanylate cyclase, membrane‑anchored |
RA | 1,090,918 | T→A | 11.9% | intergenic (‑25/‑43) | insE1 ← / → ymdE | IS3 transposase A/pseudogene |
RA | 1,116,964 | A→G | 54.8% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,118,506 | A→T | 10.6% | L75Q (CTA→CAA) | yceB ← | lipoprotein, DUF1439 family |
RA | 1,121,966 | C→T | 6.2% | R118R (CGC→CGT) | yceH → | UPF0502 family protein |
RA | 1,122,159 | G→T | 12.2% | A183S (GCG→TCG) | yceH → | UPF0502 family protein |
RA | 1,123,001 | A→C | 5.5% | Q247P (CAG→CCG) | yceM → | putative oxidoreductase |
RA | 1,129,182 | G→A | 7.9% | A385T (GCC→ACC) | flgE → | flagellar hook protein |
RA | 1,129,363 | G→A | 14.4% | A36T (GCG→ACG) | flgF → | flagellar component of cell‑proximal portion of basal‑body rod |
RA | 1,141,912 | C→A | 6.4% | R47L (CGA→CTA) | yceF ← | Maf‑like protein |
RA | 1,151,750 | G→T | 31.2% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 43.1% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,164,408 | T→A | 5.2% | intergenic (‑120/‑121) | ycfQ ← / → bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
RA | 1,192,525 | C→T | 21.7% | S155N (AGC→AAC) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
RA | 1,193,873 | G→T | 45.8% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,194,365 | G→T | 14.7% | W72L (TGG→TTG) | lit → | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,197,027 | G→T | 13.7% | M25I (ATG→ATT) | ymfI → | e14 prophage; uncharacterized protein |
RA | 1,197,734 | C→T | 6.3% | R219K (AGA→AAA) | cohE ← | e14 prophage; repressor protein phage e14 |
RA | 1,206,219 | A→G | 5.4% | I140V (ATA→GTA) | mcrA → | putative 5‑methylcytosine/5‑hydroxymethylcytosine‑specific restriction nuclease; 5‑methylcytosine DNA binding protein; e14 prophage gene |
RA | 1,210,957 | C→A | 6.2% | intergenic (‑26/‑288) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,211,142 | C→T | 22.3% | intergenic (‑211/‑103) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,215,174 | G→T | 14.3% | pseudogene (118/2648 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,216,183 | C→A | 7.7% | pseudogene (1127/2648 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,217,884 | A→T | 15.3% | I69I (ATT→ATA) | ymgD ← | uncharacterized protein |
RA | 1,218,640 | C→T | 8.7% | intergenic (‑21/‑80) | ymgI ← / → ymgJ | uncharacterized protein/uncharacterized protein |
RA | 1,220,996 | G→T | 49.4% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,226,964 | C→A | 6.4% | T108K (ACA→AAA) | umuC → | DNA polymerase V, subunit C |
RA | 1,228,591 | G→T | 54.5% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,228,879 | A→C | 16.8% | L432R (CTG→CGG) | nhaB ← | sodium:proton antiporter |
RA | 1,229,460 | G→T | 12.0% | F238L (TTC→TTA) | nhaB ← | sodium:proton antiporter |
RA | 1,232,720 | C→A | 5.7% | intergenic (‑23/‑307) | ycgB ← / → dadA | SpoVR family stationary phase protein/D‑amino acid dehydrogenase |
RA | 1,234,574 | A→T | 6.8% | E80D (GAA→GAT) | dadX → | alanine racemase, catabolic, PLP‑binding |
RA | 1,243,278 | G→A | 14.1% | S431S (AGC→AGT) | dhaM ← | putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
RA | 1,247,376 | G→T | 15.8% | V285V (GTG→GTT) | dhaR → | dhaKLM operon transcription activator |
RA | 1,282,421 | A→T | 12.5% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
RA | 1,282,676 | A→G | 5.4% | noncoding (17/171 nt) | rttR ← | rtT sRNA, processed from tyrT transcript |
RA | 1,283,124 | G→A | 12.8% | intergenic (‑46/+114) | tyrT ← / ← purU | tRNA‑Tyr/formyltetrahydrofolate hydrolase |
RA | 1,306,564 | A→T | 6.2% | intergenic (‑61/+44) | yciA ← / ← yciB | acyl‑CoA esterase/IspA family inner membrane protein |
RA | 1,308,862 | A→C | 5.6% | S196R (AGC→CGC) | ompW → | outer membrane protein W |
RA | 1,311,385 | T→A | 5.9% | Q32L (CAG→CTG) | trpA ← | tryptophan synthase, alpha subunit |
RA | 1,322,140 | T→A | 54.1% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,326,970 | C→A | 5.5% | H556N (CAC→AAC) | topA → | DNA topoisomerase I, omega subunit |
RA | 1,342,794 | C→T | 5.9% | D126N (GAC→AAC) | rnb ← | ribonuclease II |
RA | 1,345,657 | C→A | 5.8% | intergenic (‑361/+7) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
RA | 1,350,335 | G→T | 5.2% | R345S (CGC→AGC) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
RA | 1,352,314 | C→A | 5.6% | V377V (GTG→GTT) | puuP ← | putrescine importer |
RA | 1,353,519 | A→C | 8.7% | intergenic (‑75/+228) | puuP ← / ← puuA | putrescine importer/glutamate‑‑putrescine ligase |
RA | 1,361,131 | G→T | 5.4% | intergenic (+59/+61) | puuE → / ← pspF | 4‑aminobutyrate aminotransferase, PLP‑dependent/psp operon transcriptional activator |
RA | 1,361,433 | G→T | 12.7% | P246Q (CCG→CAG) | pspF ← | psp operon transcriptional activator |
RA | 1,365,202 | C→A | 13.6% | H244N (CAT→AAT) | ycjM → | alpha amylase catalytic domain family protein |
RA | 1,365,283 | G→T | 35.5% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
RA | 1,368,566 | T→G | 19.0% | F74V (TTC→GTC) | ycjP → | inner membrane putative ABC superfamily sugar transporter permease |
JC JC | 1,376,043 | IS5 (–) +4 bp | 81.8% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,394 | C→T | 52.0% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,385,315 | C→A | 5.3% | A266S (GCA→TCA) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,385,964 | T→G | 10.7% | Q49H (CAA→CAC) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,386,008 | G→T | 34.1% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 37.4% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,397,096 | G→A | 7.4% | R139R (CGC→CGT) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,397,506 | C→T | 5.5% | E3K (GAA→AAA) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,399,129 | A→C | 5.6% | E44D (GAA→GAC) | abgR → | putative DNA‑binding transcriptional regulator of abgABT operon |
RA | 1,402,363 | G→A | 6.7% | M19I (ATG→ATA) | ydaN → | putative Zn(II) transporter |
RA | 1,413,956 | G→T | 10.7% | intergenic (‑243/+66) | ydaG ← / ← racR | Rac prophage; uncharacterized protein/Rac prophage; putative DNA‑binding transcriptional regulator |
RA | 1,418,325 | A→T | 5.6% | E96V (GAA→GTA) | trkG → | Rac prophage; potassium transporter subunit |
RA | 1,459,790 | C→T | 5.5% | pseudogene (142/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,461,652 | G→T | 12.3% | pseudogene (2004/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
RA | 1,471,707 | A→T | 23.2% | *769C (TGA→TGT) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
RA | 1,488,445 | T→A | 5.0% | Q295L (CAG→CTG) | ydcI ← | putative DNA‑binding transcriptional regulator |
RA | 1,497,653 | A→T | 5.6% | pseudogene (254/432 nt) | insP ← | pseudogene, IS609 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
RA | 1,503,048 | G→T | 6.3% | intergenic (+49/+43) | ydcP → / ← yncJ | putative peptidase/uncharacterized protein |
RA | 1,506,689 | A→T | 6.2% | Q260L (CAG→CTG) | ydcS → | polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
RA | 1,513,440 | T→A | 10.3% | Y53N (TAT→AAT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
RA | 1,519,349 | T→A | 54.8% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,521,211 | A→T | 6.9% | L5F (TTA→TTT) | yncH → | IPR020099 family protein |
RA | 1,521,805 | C→T | 5.1% | intergenic (+396/‑354) | yncH → / → rhsE | IPR020099 family protein/pseudogene, Rhs family protein |
RA | 1,524,654 | G→T | 12.0% | W159L (TGG→TTG) | ydcD → | uncharacterized protein |
RA | 1,538,906 | G→A | 16.9% | pseudogene (116/381 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
RA | 1,539,484 | G→A | 6.5% | pseudogene (488/951 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
RA | 1,548,144 | G→T | 50.2% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,563,276 | G→T | 60.4% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 57.2% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,569,899 | A→G | 5.2% | S660P (TCT→CCT) | yddB ← | putative TonB‑dependent outer membrane receptor |
RA | 1,576,869 | G→A | 15.7% | intergenic (‑88/+314) | ydeN ← / ← ydeO | putative Ser‑type periplasmic non‑aryl sulfatase/UV‑inducible global regulator, EvgA‑, GadE‑dependent |
RA | 1,582,413 | G→T | 6.1% | N47K (AAC→AAA) | ydeR ← | putative fimbrial‑like adhesin protein |
RA | 1,587,275 | C→A | 8.3% | pseudogene (4970/5323 nt) | yneO ← | pseudogene, AidA homolog |
RA | 1,596,093 | T→G | 6.5% | L116R (CTC→CGC) | lsrA → | autoinducer 2 import ATP‑binding protein |
RA | 1,599,970 | T→A | 11.2% | D221E (GAT→GAA) | lsrB → | autoinducer 2‑binding protein |
RA | 1,604,068 | G→T | 13.2% | T290T (ACC→ACA) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
RA | 1,607,556 | A→C | 20.7% | intergenic (‑48/+16) | glsB ← / ← sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
RA | 1,611,821 | C→A | 9.7% | I179I (ATC→ATA) | ydeA → | arabinose efflux transporter, arabinose‑inducible |
RA | 1,628,207 | G→A | 84.2% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,640,268 | A→C | 14.9% | K39Q (AAG→CAG) | ydfV → | Qin prophage; uncharacterized protein |
RA | 1,641,686 | G→A | 6.1% | pseudogene (208/279 nt) | ydfX ← | pseudogene, Qin prophage;Phage or Prophage Related |
RA | 1,643,394 | A→G | 5.4% | intergenic (+96/‑245) | ydfC → / → dicF | uncharacterized protein, Qin prophage/sRNA antisense regulator, inhibits ftsZ, Hfq‑dependent; Qin prophage |
RA | 1,649,456 | C→T | 13.4% | intergenic (‑58/+148) | rspA ← / ← ynfA | bifunctional D‑altronate/D‑mannonate dehydratase/UPF0060 family inner membrane protein |
RA | 1,652,812 | A→T | 6.0% | I163F (ATC→TTC) | ynfE → | putative selenate reductase, periplasmic |
RA | 1,661,763 | C→A | 55.3% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,673,381 | C→A | 7.7% | S233* (TCA→TAA) | ydgH → | DUF1471 family periplasmic protein |
RA | 1,700,047 | T→C | 9.4% | F8F (TTT→TTC) | rsxA → | SoxR iron‑sulfur cluster reduction factor component; inner membrane protein of electron transport complex |
RA | 1,702,966 | T→A | 6.5% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,062 | T→A | 12.7% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,071 | A→T | 8.4% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,101 | C→G | 7.7% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,704,060 | A→T | 8.5% | Q221L (CAA→CTA) | rsxD → | SoxR iron‑sulfur cluster reduction factor component; putative membrane protein of electron transport complex |
RA | 1,711,397 | C→T | 49.3% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,726,289 | A→T | 8.7% | P982P (CCA→CCT) | lhr → | putative ATP‑dependent helicase |
RA | 1,747,398 | C→A | 7.3% | A230A (GCG→GCT) | ydhV ← | putative oxidoreductase subunit |
RA | 1,748,094 | T→A | 5.8% | intergenic (‑7/+14) | ydhV ← / ← ydhY | putative oxidoreductase subunit/putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
RA | 1,749,729 | T→C | 5.5% | intergenic (‑331/‑226) | ydhZ ← / → pykF | uncharacterized protein/pyruvate kinase I |
RA | 1,770,281 | T→A | 33.0% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,772,512 | G→A | 5.9% | D354N (GAT→AAT) | ydiO → | putative acyl‑CoA dehydrogenase |
RA | 1,780,104 | C→A | 10.0% | A422A (GCG→GCT) | ppsA ← | phosphoenolpyruvate synthase |
RA | 1,784,723 | A→C | 8.1% | F260C (TTT→TGT) | ydiU ← | UPF0061 family protein |
RA | 1,784,836 | A→T | 5.0% | V222V (GTT→GTA) | ydiU ← | UPF0061 family protein |
RA | 1,784,952 | A→G | 14.9% | F184L (TTT→CTT) | ydiU ← | UPF0061 family protein |
RA | 1,788,683 | C→T | 11.5% | V243I (GTT→ATT) | btuC ← | vitamin B12 transporter subunit: membrane component of ABC superfamily |
RA | 1,795,380 | A→T | 8.4% | V483E (GTA→GAA) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,802,047 | G→A | 47.2% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,807,639 | G→A | 13.5% | intergenic (‑250/+39) | ydjO ← / ← cedA | uncharacterized protein/cell division modulator |
RA | 1,824,998 | G→T | 11.0% | R9R (CGA→AGA) | astA ← | arginine succinyltransferase |
RA | 1,832,413 | C→A | 29.9% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 49.0% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,849,412 | T→A | 6.2% | T273S (ACT→TCT) | ydjG ← | alpha‑Keto reductase, NADH‑dependent; can use methylglyoxal as substrate |
RA | 1,850,966 | G→A | 8.5% | L74F (CTC→TTC) | ydjH ← | putative kinase |
RA | 1,865,422 | C→A | 53.8% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,872,520 | G→T | 51.0% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,884,059 | G→A | 6.0% | intergenic (‑56/+149) | fadD ← / ← yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
RA | 1,906,096 | T→A | 6.7% | K246N (AAA→AAT) | htpX ← | putative endopeptidase |
RA | 1,906,578 | C→A | 11.5% | A86S (GCT→TCT) | htpX ← | putative endopeptidase |
RA | 1,909,342 | T→A | 49.6% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,909,792 | G→T | 5.3% | intergenic (‑1/+96) | proQ ← / ← msrC | RNA chaperone, putative ProP translation regulator/free methionine‑(R)‑sulfoxide reductase |
RA | 1,915,555 | A→C | 15.9% | Q359P (CAG→CCG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
RA | 1,930,013 | G→A | 5.9% | L187L (CTG→TTG) | zwf ← | glucose‑6‑phosphate 1‑dehydrogenase |
RA | 1,934,690 | G→T | 10.0% | N401K (AAC→AAA) | mepM ← | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
RA | 1,936,668 | G→A | 5.6% | S58L (TCA→TTA) | znuA ← | zinc transporter subunit: periplasmic‑binding component of ABC superfamily |
RA | 1,938,106 | C→A | 5.5% | R146S (CGC→AGC) | znuB → | zinc transporter subunit: membrane component of ABC superfamily |
RA | 1,940,407 | C→A | 6.3% | E11* (GAA→TAA) | yobI ← | uncharacterized protein |
RA | 1,944,177 | C→A | 31.7% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,948,159 | C→T | 6.1% | T154M (ACG→ATG) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
RA | 1,949,009 | T→A | 5.9% | P752P (CCA→CCT) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
RA | 1,969,349 | C→A | 6.8% | R78L (CGA→CTA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,984,340 | G→A | 11.5% | L393L (TTG→TTA) | tyrP → | tyrosine transporter |
RA | 1,999,220 | C→A | 10.2% | F9L (TTC→TTA) | fliT → | putative flagellar synthesis and assembly chaperone |
RA | 2,020,166 | C→A | 25.1% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,039,761 | C→A | 9.3% | S448* (TCA→TAA) | yeeJ → | putative adhesin |
RA | 2,048,571 | A→T | 20.4% | P10P (CCA→CCT) | amn → | AMP nucleosidase |
RA | 2,056,803 | A→T | 8.0% | M1K (ATG→AAG) † | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
RA | 2,070,058 | C→A | 10.8% | A90A (GCC→GCA) | yeeS → | CP4‑44 prophage; putative DNA repair protein |
RA | 2,078,521 | C→A | 11.9% | V162V (GTG→GTT) | yeeE ← | UPF0394 family inner membrane protein |
RA | 2,084,482 | C→T | 5.2% | S270S (AGC→AGT) | hisG → | ATP phosphoribosyltransferase |
RA | 2,094,530 | C→T | 5.9% | V74M (GTG→ATG) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
RA | 2,098,995 | C→A | 53.7% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,102,316 | A→T | 10.2% | F250L (TTT→TTA) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,114,911 | A→T | 26.9% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,120,334 | T→C | 5.8% | K113R (AAA→AGA) | wcaG ← | bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase/ GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase |
RA | 2,121,548 | A→T | 5.9% | V83E (GTG→GAG) | gmd ← | GDP‑D‑mannose dehydratase, NAD(P)‑binding |
RA | 2,122,367 | C→T | 7.5% | M1M (ATG→ATA) † | wcaF ← | putative acyl transferase |
RA | 2,139,910 | G→T | 51.0% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,144,474 | C→A | 69.9% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,166,765 | C→T | 5.5% | P331P (CCG→CCA) | gatC ← | galactitol PTS permease ‑ GatC subunit |
RA | 2,170,285 | C→T | 6.7% | A133A (GCG→GCA) | gatY ← | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
RA | 2,170,708 | G→T | 8.3% | intergenic (‑25/+283) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,713 | C→A | 24.8% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,724 | G→T | 25.0% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,757 | T→A | 5.6% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,178,915 | C→G | 8.5% | intergenic (‑135/+88) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
RA | 2,195,449 | A→T | 49.3% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,216,296 | C→A | 28.9% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,237,098 | G→T | 33.8% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,240,469 | G→T | 6.5% | intergenic (‑221/+73) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
RA | 2,242,501 | C→A | 13.2% | E199D (GAG→GAT) | yeiE ← | putative DNA‑binding transcriptional regulator |
RA | 2,243,053 | C→A | 7.0% | L15F (TTG→TTT) | yeiE ← | putative DNA‑binding transcriptional regulator |
RA | 2,249,281 | C→A | 5.5% | Q150K (CAG→AAG) | yeiL → | putative transcriptional regulator |
RA | 2,254,334 | C→A | 8.0% | G186C (GGT→TGT) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
RA | 2,254,517 | C→T | 15.0% | A125T (GCC→ACC) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
RA | 2,258,182 | A→T | 9.5% | K281* (AAG→TAG) | setB → | lactose/glucose efflux system |
RA | 2,259,989 | A→G | 5.6% | N89S (AAT→AGT) | yeiQ → | putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 2,264,143 | G→A | 27.9% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,276,920 | G→A | 5.4% | F169F (TTC→TTT) | yejK ← | spermidine nucleoid‑associated protein |
RA | 2,289,287 | C→A | 11.6% | P171P (CCG→CCT) | ccmC ← | heme exporter subunit |
RA | 2,289,374 | C→A | 55.0% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,293,295 | C→T | 9.2% | V149I (GTT→ATT) | napG ← | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
RA | 2,295,611 | C→T | 6.5% | A208T (GCG→ACG) | napA ← | nitrate reductase, periplasmic, large subunit |
RA | 2,298,128 | C→T | 12.6% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,298,354 | C→T | 6.5% | intergenic (+482/+233) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,299,282 | C→T | 7.7% | V318I (GTT→ATT) | mqo ← | malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,302,650 | C→A | 19.8% | M57I (ATG→ATT) | alkB ← | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
RA | 2,305,116 | C→A | 51.5% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,310,952 | C→T | 5.6% | E802K (GAG→AAG) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
RA | 2,321,444 | T→A | 5.2% | D60V (GAT→GTT) | yfaP ← | DUF2135 family protein, putative host defense protein |
RA | 2,328,078 | A→T | 6.3% | Y121N (TAC→AAC) | yfaT ← | DUF1175 family protein, putative host defense protein |
RA | 2,338,611 | C→A | 6.2% | R90S (CGT→AGT) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
RA | 2,338,758 | C→A | 5.5% | R139S (CGT→AGT) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
RA | 2,348,261 | Δ1 bp | 6.9% | coding (518/1260 nt) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,352,573 | C→A | 54.4% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,359,673 | G→T | 43.8% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 47.7% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,367,110 | G→A | 5.3% | intergenic (‑93/+17) | pmrD ← / ← menE | inactive two‑component system connector protein/O‑succinylbenzoate‑CoA ligase |
RA | 2,370,361:1 | +G | 54.5% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,841 | G→A | 5.5% | I77I (ATC→ATT) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 57.9% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,390,862 | C→A | 15.2% | V20V (GTG→GTT) | nuoH ← | NADH:ubiquinone oxidoreductase, membrane subunit H |
RA | 2,400,871 | T→C | 6.1% | intergenic (‑751/‑169) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
RA | 2,403,195 | G→T | 8.8% | S546* (TCG→TAG) | yfbS ← | putative transporter |
RA | 2,405,946 | T→G | 55.5% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,407,141 | G→T | 10.3% | E65* (GAA→TAA) | ackA → | acetate kinase A and propionate kinase 2 |
RA | 2,414,178 | C→A | 5.3% | R27S (CGC→AGC) | yfcG → | GSH‑dependent disulfide bond oxidoreductase |
RA | 2,420,367 | T→A | 5.4% | intergenic (‑100/+121) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
RA | 2,422,841 | C→A | 44.3% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 55.0% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,431,731 | G→T | 11.6% | A101A (GCG→GCT) | flk → | putative flagella assembly protein |
RA | 2,443,111 | C→T | 9.8% | G140S (GGC→AGC) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,446,543 | G→A | 9.8% | pseudogene (1938/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
RA | 2,447,486 | C→T | 5.5% | pseudogene (995/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
RA | 2,450,335 | C→T | 55.3% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,454,297 | T→G | 35.1% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,463,037 | C→T | 5.1% | A143V (GCA→GTA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,906 | C→A | 15.8% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,910 | G→T | 13.7% | R434I (AGA→ATA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,915 | C→A | 11.5% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,474,418 | G→T | 52.0% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,477,974 | C→A | 5.2% | P41Q (CCA→CAA) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
RA | 2,478,274 | T→A | 6.9% | L141* (TTG→TAG) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
RA | 2,520,863 | G→T | 15.4% | D187Y (GAC→TAC) | yfeH → | putative inorganic ion transporter |
RA | 2,525,695 | C→T | 6.1% | intergenic (+112/‑73) | cysZ → / → cysK | EI24 family inner membrane protein; putative sulfate transporter/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
RA | 2,530,470 | C→A | 5.0% | G43C (GGC→TGC) | pdxK ← | pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
RA | 2,542,903 | G→T | 6.9% | intergenic (+138/+102) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
RA | 2,544,288 | C→A | 5.9% | V96V (GTG→GTT) | yfeY ← | RpoE‑regulated lipoprotein |
RA | 2,548,703 | C→T | 5.1% | E129K (GAA→AAA) | eutK ← | putative ethanol utilization carboxysome structural protein |
RA | 2,556,774 | G→A | 21.5% | intergenic (+298/‑177) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
RA | 2,576,254 | G→A | 11.8% | intergenic (‑118/+8) | ypfG ← / ← nudK | DUF1176 family protein/GDP‑mannose pyrophosphatase |
RA | 2,576,325 | C→A | 45.0% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,587,029:1 | +G | 40.2% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,257 | G→T | 5.1% | C280* (TGC→TGA) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,595,292 | C→A | 6.6% | S39* (TCG→TAG) | hyfB → | hydrogenase 4, membrane subunit |
RA | 2,598,122 | T→G | 7.1% | L306R (CTT→CGT) | hyfC → | hydrogenase 4, membrane subunit |
RA | 2,600,721 | C→A | 8.5% | S149* (TCG→TAG) | hyfF → | hydrogenase 4, membrane subunit |
RA | 2,606,516 | G→T | 54.3% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,609,187 | C→A | 25.6% | A18A (GCG→GCT) | yfgO ← | putative UPF0118 family inner membrane permease |
RA | 2,614,168 | C→A | 51.0% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,624,800 | C→A | 5.0% | P365P (CCG→CCT) | guaA ← | GMP synthetase (glutamine aminotransferase) |
RA | 2,631,037 | G→T | 6.4% | R325R (CGC→CGA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
RA | 2,644,397 | A→T | 8.3% | L417* (TTG→TAG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
RA | 2,647,653 | C→A | 7.4% | D214Y (GAT→TAT) | sseB ← | rhodanase‑like enzyme, sulfur transfer from thiosulfate |
RA | 2,651,665 | G→T | 46.1% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,654,099 | C→A | 18.9% | A264A (GCG→GCT) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
RA | 2,654,144 | G→T | 7.7% | I249I (ATC→ATA) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
RA | 2,660,189 | G→T | 6.1% | I339I (ATC→ATA) | hcaT ← | putative 3‑phenylpropionic transporter |
RA | 2,660,345 | A→T | 6.4% | T287T (ACT→ACA) | hcaT ← | putative 3‑phenylpropionic transporter |
RA | 2,665,296 | C→T | 5.4% | S238L (TCG→TTG) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
RA | 2,667,539 | C→T | 5.2% | R170Q (CGG→CAG) | yphB ← | mutarotase superfamily protein, YphB family |
RA | 2,670,769 | C→A | 5.1% | E318* (GAA→TAA) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,671,274 | C→A | 48.0% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,672,639 | C→A | 6.5% | E30* (GAA→TAA) | yphF ← | putative ABC superfamily sugar transporter periplasmic‑binding protein |
RA | 2,674,941 | G→T | 10.7% | I388I (ATC→ATA) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
RA | 2,678,300 | G→A | 5.7% | I189I (ATC→ATT) | glyA ← | serine hydroxymethyltransferase |
RA | 2,679,933 | C→A | 13.2% | A247D (GCT→GAT) | hmp → | fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
RA | 2,681,873 | T→A | 56.9% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,684,388 | G→A | 5.9% | L24L (CTG→TTG) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,694,471 | G→A | 5.5% | I206I (ATC→ATT) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
RA | 2,708,587 | C→A | 5.7% | T31T (ACG→ACT) | yfiE ← | putative DNA‑binding transcriptional regulator |
RA | 2,711,673 | A→C | 7.6% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
JC | 2,713,645 | +CCTGCGC | 20.5% | coding (334/2661 nt) | pka → | protein lysine acetyltransferase |
RA | 2,715,618 | C→A | 5.9% | N769K (AAC→AAA) | pka → | protein lysine acetyltransferase |
RA | 2,715,643 | G→T | 55.3% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,715,694 | G→T | 9.2% | G795C (GGC→TGC) | pka → | protein lysine acetyltransferase |
RA | 2,718,953 | G→T | 12.6% | I51I (ATC→ATA) | kgtP ← | alpha‑ketoglutarate transporter |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,740,398 | C→T | 5.6% | D253N (GAT→AAT) | ffh ← | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
RA | 2,749,167 | T→A | 5.2% | intergenic (+430/‑351) | smpB → / → intA | trans‑translation protein/CP4‑57 prophage; integrase |
RA | 2,753,064 | G→A | 6.4% | D241N (GAC→AAC) | yfjI → | CP4‑57 prophage; uncharacterized protein |
RA | 2,756,275 | C→A | 5.6% | E209* (GAG→TAG) | yfjK ← | DEAD/H helicase‑like protein, CP4‑57 putative defective prophage |
RA | 2,759,184 | C→T | 14.7% | intergenic (‑49/‑93) | yfjM ← / → rnlA | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; RNase LS |
RA | 2,763,361 | G→T | 6.3% | V100V (GTG→GTT) | yfjR → | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
RA | 2,766,832 | T→A | 6.6% | N52K (AAT→AAA) | yfjW → | CP4‑57 prophage; putative inner membrane protein |
RA | 2,767,403 | G→A | 10.7% | D243N (GAT→AAT) | yfjW → | CP4‑57 prophage; putative inner membrane protein |
RA | 2,767,939 | C→T | 5.3% | Y421Y (TAC→TAT) | yfjW → | CP4‑57 prophage; putative inner membrane protein |
RA | 2,771,358 | G→A | 34.9% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,771,400 | C→T | 6.7% | intergenic (+259/+105) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,775,830 | C→T | 11.0% | D86N (GAT→AAT) | ypjA ← | adhesin‑like autotransporter |
RA | 2,777,166 | A→T | 8.6% | pseudogene (1205/1374 nt) | ypjC ← | pseudogene |
RA | 2,777,493 | T→G | 6.3% | pseudogene (878/1374 nt) | ypjC ← | pseudogene |
RA | 2,778,307 | C→T | 9.4% | pseudogene (64/1374 nt) | ypjC ← | pseudogene |
RA | 2,783,685 | G→A | 7.1% | E115E (GAG→GAA) | lhgO → | L‑2‑hydroxyglutarate oxidase |
RA | 2,793,020 | C→T | 6.1% | E112K (GAA→AAA) | ygaC ← | uncharacterized protein |
RA | 2,809,924 | G→T | 6.3% | R126S (CGC→AGC) | yqaA ← | COG1238 family inner membrane protein |
RA | 2,811,408 | T→A | 5.5% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
RA | 2,811,566 | C→A | 9.9% | noncoding (68/77 nt) | argY ← | tRNA‑Arg |
RA | 2,813,717 | C→A | 5.9% | V552F (GTT→TTT) | alaS ← | alanyl‑tRNA synthetase |
RA | 2,820,083 | C→A | 7.1% | G111G (GGC→GGA) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
RA | 2,825,783 | C→T | 54.6% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,832,247 | C→A | 6.9% | R126L (CGT→CTT) | ascG ← | asc operon transcriptional repressor; prpBC operon repressor |
RA | 2,834,296 | C→A | 5.0% | Q472K (CAG→AAG) | ascF → | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
RA | 2,835,413 | C→A | 13.6% | I355I (ATC→ATA) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,850,790 | C→A | 47.3% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,869,269 | C→A | 7.1% | E140D (GAG→GAT) | cysD ← | sulfate adenylyltransferase, subunit 2 |
RA | 2,873,087 | G→T | 55.3% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,873,729 | G→T | 8.9% | V6V (GTC→GTA) | casE ← | CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,876,760 | C→T | 56.5% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,878,668 | G→T | 34.7% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,890,873 | A→T | 10.9% | I119I (ATT→ATA) | ygcS ← | putative transporter |
RA | 2,891,523 | T→A | 5.1% | N419Y (AAT→TAT) | ygcU ← | putative FAD‑containing dehydrogenase |
RA | 2,916,403 | C→T | 5.4% | E247E (GAG→GAA) | truC ← | tRNA(Ile1,Asp) pseudouridine(65) synthase |
RA | 2,928,446 | G→T | 13.0% | A285S (GCT→TCT) | fucP → | L‑fucose transporter |
RA | 2,930,611 | G→T | 5.3% | E557* (GAA→TAA) | fucI → | L‑fucose isomerase |
RA | 2,930,943 | C→A | 6.5% | I49I (ATC→ATA) | fucK → | L‑fuculokinase |
RA | 2,931,717 | C→A | 48.8% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,932,934 | C→A | 5.3% | H70N (CAC→AAC) | fucR → | l‑fucose operon activator |
RA | 2,934,843 | G→T | 58.4% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,953,398 | C→A | 11.3% | G797V (GGC→GTC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
RA | 2,955,808 | G→T | 6.2% | R106S (CGT→AGT) | ppdC ← | putative prepilin peptidase‑dependent protein |
RA | 2,971,037 | G→A | 5.5% | R408C (CGC→TGC) | lysA ← | diaminopimelate decarboxylase, PLP‑binding |
RA | 2,975,754 | T→A | 6.8% | intergenic (‑213/+102) | araE ← / ← kduD | arabinose transporter/hexuronate dehydrogenase; hexuronate utilization in high osmolarity |
RA | 2,978,108 | C→A | 7.7% | G282C (GGT→TGT) | yqeF ← | short chain acyltransferase |
RA | 2,979,880 | C→A | 6.0% | H225Q (CAC→CAA) | yqeG → | putative transporter |
RA | 2,982,873 | G→T | 10.4% | G71* (GGA→TGA) | yqeJ → | uncharacterized protein |
RA | 2,983,868 | G→T | 19.2% | intergenic (‑149/‑45) | yqeK ← / → ygeF | uncharacterized protein/pseudogene |
RA | 2,984,780 | G→A | 8.6% | E52K (GAA→AAA) | ygeG → | SycD‑like chaperone family TPR‑repeat‑containing protein |
RA | 2,989,295 | C→A | 51.8% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,993,195 | A→G | 9.8% | V19A (GTT→GCT) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,211 | C→A | 50.8% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,995,609 | C→A | 7.6% | L636I (CTT→ATT) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
RA | 3,001,919 | C→A | 5.8% | H351N (CAT→AAT) | ygeX → | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
RA | 3,009,563 | G→T | 6.5% | E49* (GAA→TAA) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
RA | 3,017,288 | G→A | 5.2% | A872T (GCC→ACC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,020,228 | G→T | 17.8% | A368A (GCG→GCT) | guaD → | guanine deaminase |
RA | 3,020,629 | C→A | 10.8% | I50I (ATC→ATA) | ygfQ → | putative purine permease |
RA | 3,024,983 | C→G | 30.9% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,033,430 | G→T | 17.3% | D73Y (GAC→TAC) | fldB → | flavodoxin 2 |
RA | 3,035,672 | C→A | 8.9% | intergenic (+20/+176) | ygfZ → / ← yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
RA | 3,039,409 | T→G | 16.4% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,044,464 | G→A | 54.4% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,044,493 | A→C | 11.5% | L395W (TTG→TGG) | ubiI ← | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,049,606 | C→A | 5.8% | R3R (CGG→AGG) | fau → | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,050,166 | C→A | 14.5% | intergenic (+18/‑42) | fau → / → sibC | 5‑formyltetrahydrofolate cyclo‑ligase family protein/sRNA antisense regulator of toxic IbsC protein |
RA | 3,056,703 | C→A | 6.5% | R120S (CGC→AGC) | argK → | membrane ATPase/protein kinase |
RA | 3,075,107 | C→A | 5.6% | intergenic (‑113/‑165) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,075,114 | C→A | 50.1% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 34.1% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,079,934 | T→C | 5.5% | intergenic (+173/‑131) | yqgC → / → metK | uncharacterized protein/S‑adenosylmethionine synthetase |
RA | 3,080,618 | T→A | 46.7% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,080,755 | T→G | 21.0% | F231V (TTC→GTC) | metK → | S‑adenosylmethionine synthetase |
RA | 3,095,507 | G→T | 5.0% | F235L (TTC→TTA) | trmI ← | tRNA m(7)G46 methyltransferase, SAM‑dependent |
RA | 3,096,752 | G→T | 6.1% | S127S (TCG→TCT) | mutY → | adenine DNA glycosylase |
RA | 3,103,319 | C→T | 14.9% | I136I (ATC→ATT) | yqgA → | DUF554 family putative inner membrane protein |
RA | 3,110,066 | A→C | 5.6% | V802V (GTT→GTG) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 62.3% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,116,892 | C→A | 5.5% | L91L (CTG→CTT) | glcB ← | malate synthase G |
RA | 3,120,216 | C→A | 58.5% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,126,414 | C→A | 5.4% | R53L (CGG→CTG) | yghR ← | putative ATP‑binding protein |
RA | 3,132,876 | C→A | 5.3% | P264Q (CCG→CAG) | yghU → | putative S‑transferase |
RA | 3,137,675 | C→T | 6.2% | P275P (CCG→CCA) | hybA ← | hydrogenase 2 4Fe‑4S ferredoxin‑type component |
RA | 3,151,657 | G→T | 9.3% | D217Y (GAT→TAT) | yqhG → | DUF3828 family putative periplasmic protein |
RA | 3,173,669 | G→T | 37.9% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,181,300 | C→T | 5.7% | pseudogene (521/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,182,319 | G→T | 11.0% | pseudogene (1540/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
RA | 3,184,128 | C→T | 6.4% | S46S (AGC→AGT) | yqiI → | fimbrial protein |
RA | 3,192,913 | C→A | 5.5% | A30S (GCA→TCA) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
RA | 3,196,371 | G→T | 7.0% | P374P (CCG→CCT) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
RA | 3,202,506 | C→A | 5.3% | S375* (TCG→TAG) | ttdT → | L‑tartrate/succinate antiporte |
RA | 3,209,857 | C→A | 6.4% | intergenic (‑7/‑281) | yqjH ← / → yqjI | putative siderophore interacting protein/PadR family putative transcriptional regulator |
RA | 3,211,932 | C→A | 15.3% | V168V (GTG→GTT) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
RA | 3,215,584 | C→A | 5.0% | H254N (CAT→AAT) | ebgR → | transcriptional repressor |
RA | 3,246,908 | G→A | 22.2% | R222R (CGC→CGT) | yhaJ ← | LysR family putative transcriptional regulator |
RA | 3,252,258 | C→A | 53.5% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,263,315 | T→C | 8.0% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,263,460 | C→A | 7.3% | intergenic (+499/+115) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,267,619 | G→T | 5.7% | I216I (ATC→ATA) | garP ← | putative (D)‑galactarate transporter |
RA | 3,278,427 | C→A | 17.8% | C128* (TGC→TGA) | agaC → | N‑acetylgalactosamine‑specific enzyme IIC component of PTS |
RA | 3,302,027 | G→T | 30.1% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,314,415 | C→A | 7.8% | P186P (CCG→CCT) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,314,944 | G→A | 12.2% | T10I (ACT→ATT) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,316,300 | C→A | 6.8% | R377L (CGT→CTT) | glmM ← | phosphoglucosamine mutase |
RA | 3,337,617 | T→A | 5.4% | I105I (ATT→ATA) | lptB → | lipopolysaccharide export ABC transporter ATP‑binding protein of the LptBFGC export complex |
RA | 3,346,662 | G→T | 9.3% | R250S (CGC→AGC) | yhcC ← | putative Fe‑S oxidoreductase, Radical SAM superfamily protein |
RA | 3,354,405 | C→T | 62.9% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,365,797 | A→T | 5.1% | V46E (GTA→GAA) | nanT ← | sialic acid transporter |
RA | 3,371,372 | G→T | 12.7% | I65I (ATC→ATA) | rpsI ← | 30S ribosomal subunit protein S9 |
RA | 3,373,985 | C→A | 59.5% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 53.9% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,378,352 | G→T | 8.1% | V97V (GTG→GTT) | argR → | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
RA | 3,378,591 | G→A | 5.1% | intergenic (+59/‑306) | argR → / → yhcN | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced |
RA | 3,385,479 | C→G | 11.0% | intergenic (‑92/+338) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,385,516 | A→T | 10.2% | intergenic (‑129/+301) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,385,518 | G→C | 7.6% | intergenic (‑131/+299) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,385,571 | C→G | 9.0% | intergenic (‑184/+246) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,385,702 | A→C | 5.5% | intergenic (‑315/+115) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
RA | 3,387,121 | C→T | 7.0% | A833T (GCT→ACT) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,392,594 | A→C | 8.4% | A248A (GCT→GCG) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
RA | 3,396,082 | G→T | 37.1% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,400,220 | C→A | 9.9% | I315I (ATC→ATA) | accC → | acetyl‑CoA carboxylase, biotin carboxylase subunit |
RA | 3,416,666 | T→G | 11.4% | intergenic (+113/+116) | yhdZ → / ← rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
RA | 3,440,151 | G→T | 38.2% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 55.0% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,441,811 | C→T | 11.6% | K39K (AAG→AAA) | rpsQ ← | 30S ribosomal subunit protein S17 |
RA | 3,455,867 | C→A | 57.5% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,461,906 | G→A | 6.7% | T436I (ACT→ATT) | chiA ← | periplasmic endochitinase |
RA | 3,465,121 | C→A | 5.7% | D585Y (GAC→TAC) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
RA | 3,469,871 | T→A | 5.0% | intergenic (‑72/+95) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
RA | 3,471,921 | C→A | 7.8% | intergenic (‑65/+30) | slyD ← / ← yheV | FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase)/DUF2387 family putative metal‑binding protein |
RA | 3,473,139 | G→T | 57.7% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,476,265 | G→A | 5.2% | A540T (GCC→ACC) | yheS → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 3,477,579 | G→T | 8.7% | C340F (TGT→TTT) M1M (ATG→ATT) † |
yheT → yheU → |
UPF0017 family putative hydrolase UPF0270 family protein |
RA | 3,495,992 | G→A | 10.2% | M98I (ATG→ATA) | frlC → | fructoselysine 3‑epimerase |
RA | 3,497,725 | G→T | 5.7% | V105V (GTG→GTT) | frlR → | putative DNA‑binding transcriptional regulator |
RA | 3,498,214 | T→G | 8.7% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,501,910 | G→A | 11.3% | H14Y (CAT→TAT) | php ← | phosphotriesterase homology protein |
RA | 3,502,657 | G→T | 6.3% | I172I (ATC→ATA) | yhfW ← | phosphopentomutase‑related metalloenzyme superfamily protein |
RA | 3,504,812 | C→T | 12.5% | E298K (GAA→AAA) | yhfZ ← | putative DNA‑binding transcriptional regulator |
RA | 3,516,949 | C→A | 11.0% | F240L (TTC→TTA) | mrcA → | fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,527,522 | G→T | 10.1% | R449L (CGT→CTT) | pck → | phosphoenolpyruvate carboxykinase |
RA | 3,529,524 | G→T | 13.6% | F140L (TTC→TTA) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
RA | 3,530,481 | G→T | 17.2% | R104L (CGT→CTT) | greB → | transcript cleavage factor |
RA | 3,531,954 | A→T | 9.3% | Q404L (CAG→CTG) | yhgF → | putative transcriptional accessory protein |
RA | 3,539,825 | G→T | 5.0% | intergenic (+267/‑93) | nfuA → / → gntT | Fe/S biogenesis protein; putative scaffold/chaperone for damaged Fe/S proteins/gluconate transporter, high‑affinity GNT I system |
RA | 3,543,959 | G→T | 55.0% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
RA | 3,551,253 | C→A | 7.1% | P62P (CCG→CCT) | rtcB ← | RNA‑splicing ligase |
RA | 3,553,566 | C→A | 11.9% | D134Y (GAT→TAT) | glpR ← | GlpR DNA‑binding transcriptional repressor |
RA | 3,555,311 | T→C | 5.2% | intergenic (‑128/‑62) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
RA | 3,555,325 | T→C | 21.7% | intergenic (‑142/‑48) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
RA | 3,561,574 | C→A | 51.1% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,572,998 | T→A | 10.4% | Y3F (TAC→TTC) | yhhW ← | quercetinase activity in vitro |
RA | 3,574,166 | G→T | 6.0% | intergenic (‑1/+121) | yhhX ← / ← ryhB | putative oxidoreductase/sRNA antisense regulator mediating positive Fur regulon response, Hfq‑dependent; global iron regulator |
RA | 3,575,020 | G→A | 9.0% | intergenic (+34/‑203) | yhhY → / → yhhZ | putative acetyltransferase/putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
RA | 3,575,575 | T→A | 5.6% | I118N (ATC→AAC) | yhhZ → | putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
RA | 3,579,422 | C→A | 5.9% | E254D (GAG→GAT) | ggt ← | gamma‑glutamyltranspeptidase |
RA | 3,609,368 | T→A | 9.1% | F256L (TTT→TTA) | nikB → | nickel transporter subunit |
RA | 3,622,519 | C→A | 11.1% | R127L (CGA→CTA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
RA | 3,627,494 | T→C | 5.2% | pseudogene (325/1194 nt) | yhiL ← | pseudogene, DUF4049 family protein |
RA | 3,631,222 | A→G | 6.9% | Y74C (TAT→TGT) | pitA → | phosphate transporter, low‑affinity; tellurite importer |
RA | 3,634,084 | C→T | 14.5% | intergenic (+179/‑138) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
RA | 3,636,207 | T→A | 9.8% | T96S (ACT→TCT) | rsmJ ← | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
RA | 3,640,489 | T→A | 13.1% | V277V (GTT→GTA) | gor → | glutathione oxidoreductase |
RA | 3,646,542 | C→A | 11.3% | S6I (AGC→ATC) | insH1 ← | IS5 transposase and trans‑activator |
RA | 3,657,073 | C→A | 6.3% | intergenic (+186/+177) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
RA | 3,662,801 | T→A | 7.8% | intergenic (‑253/‑151) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,671,771 | T→A | 12.5% | intergenic (‑61/+9) | yhjG ← / ← yhjH | putative inner membrane‑anchored periplasmic AsmA family protein/cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
RA | 3,679,301 | T→G | 37.5% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 58.8% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,681,219 | C→A | 11.1% | A439S (GCG→TCG) | bcsC ← | cellulose synthase subunit |
RA | 3,698,074 | C→A | 9.3% | M16I (ATG→ATT) | dppC ← | dipeptide/heme transporter |
RA | 3,721,480 | T→G | 7.4% | T418P (ACG→CCG) | xylB ← | xylulokinase |
RA | 3,721,485 | T→G | 8.5% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
RA | 3,727,917 | C→A | 5.7% | L280I (CTC→ATC) | xylH → | D‑xylose ABC transporter permease subunit |
RA | 3,731,688 | C→T | 8.3% | Q278* (CAG→TAG) | malS → | alpha‑amylase |
RA | 3,733,135 | A→T | 12.0% | N24I (AAC→ATC) | avtA → | valine‑pyruvate aminotransferase 1 |
RA | 3,738,431 | C→A | 48.5% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,745,447 | C→A | 6.5% | I32I (ATC→ATA) | yiaU → | putative DNA‑binding transcriptional regulator |
RA | 3,751,414 | T→G | 13.2% | H603P (CAT→CCT) | selB ← | selenocysteinyl‑tRNA‑specific translation factor |
RA | 3,758,601 | G→T | 8.2% | R1020L (CGG→CTG) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
RA | 3,774,410 | T→A | 9.4% | intergenic (+33/‑165) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,780,155 | C→A | 5.3% | I512I (ATC→ATA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,785,915 | G→T | 48.4% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
RA | 3,786,687 | C→A | 6.4% | L119F (TTG→TTT) | yibB ← | YibB family protein, function unknown |
RA | 3,810,195 | C→A | 50.0% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,813,962 | T→C | 13.5% | Q190R (CAA→CGA) | ligB ← | DNA ligase, NAD(+)‑dependent |
RA | 3,816,601 | A→T | 81.4% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 46.1% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,822,340 | A→C | 14.6% | Q12H (CAA→CAC) | xanP → | xanthine permease |
RA | 3,822,345 | T→G | 7.2% | V14G (GTT→GGT) | xanP → | xanthine permease |
RA | 3,825,702 | C→A | 57.2% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,830,311 | G→T | 29.4% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,837,177 | C→T | 24.9% | intergenic (‑28/‑147) | yicO ← / → ade | putative adenine permease/cryptic adenine deaminase |
RA | 3,839,562 | C→A | 6.5% | A322A (GCG→GCT) | uhpT ← | hexose phosphate transporter |
RA | 3,844,801 | C→A | 6.2% | M448I (ATG→ATT) | ilvB ← | acetolactate synthase 2 large subunit |
RA | 3,846,882 | T→G | 5.5% | intergenic (‑265/‑31) | istR ← / → tisB | sRNA antisense regulators IstR‑1 and IstR‑2, affectr tisB, Hfq‑dependent/toxic membrane persister formation peptide, LexA‑regulated |
RA | 3,850,839 | G→T | 20.9% | P309Q (CCG→CAG) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,860,159 | C→A | 48.4% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,868,359 | C→A | 11.9% | A54A (GCG→GCT) | dgoR ← | putative DNA‑binding transcriptional regulator |
RA | 3,888,527 | G→T | 13.4% | L172L (CTG→CTT) | chrR → | chromate reductase, Class I, flavoprotein |
RA | 3,895,371 | C→A | 11.8% | T70T (ACG→ACT) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
RA | 3,897,492 | G→T | 8.4% | P489Q (CCG→CAG) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 3,898,210 | G→T | 7.4% | L250I (CTA→ATA) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 3,901,867 | T→G | 6.1% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
RA | 3,907,094 | G→A | 19.4% | intergenic (‑66/+96) | glmS ← / ← glmU | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase/fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
RA | 3,910,894 | C→A | 55.3% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,912,648 | A→T | 9.1% | G190G (GGT→GGA) | atpA ← | F1 sector of membrane‑bound ATP synthase, alpha subunit |
RA | 3,915,397 | A→C | 7.2% | N5K (AAT→AAG) | atpB ← | F0 sector of membrane‑bound ATP synthase, subunit a |
RA | 3,921,086 | A→T | 7.3% | K191I (AAA→ATA) | asnA → | asparagine synthetase A |
RA | 3,923,700 | G→T | 6.7% | R252S (CGC→AGC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,924,918 | G→A | 7.0% | G81G (GGG→GGA) | kup → | potassium transporter |
RA | 3,930,891 | G→T | 9.3% | D80Y (GAT→TAT) | rbsK → | ribokinase |
RA | 3,960,036 | G→A | 81.7% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,964,617 | A→T | 8.7% | S375S (TCA→TCT) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
RA | 3,975,679 | A→C | 6.0% | intergenic (+47/‑56) | yifK → / → argX | putative APC family amino acid transporter/tRNA‑Arg |
RA | 3,994,247 | A→T | 63.0% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,999,888 | A→G | 6.2% | K222R (AAA→AGA) | recQ → | ATP‑dependent DNA helicase |
RA | 4,009,705 | G→A | 46.7% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,037,227 | G→T | 5.2% | V150V (GTG→GTT) | dsbA → | periplasmic protein disulfide isomerase I |
RA | 4,049,008 | A→T | 16.3% | L231Q (CTG→CAG) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
RA | 4,056,018 | T→A | 58.2% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,062,424 | G→T | 49.0% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,064,048 | T→G | 11.8% | N357H (AAT→CAT) | yihS ← | aldose‑ketose isomerase; D‑mannose isomerase |
RA | 4,066,133 | T→G | 54.3% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 57.1% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,080,364 | G→T | 9.2% | M1M (ATG→ATT) † | yiiG → | DUF3829 family lipoprotein |
RA | 4,081,000 | A→C | 5.1% | E213D (GAA→GAC) | yiiG → | DUF3829 family lipoprotein |
RA | 4,094,362 | C→A | 59.2% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,096,163 | G→T | 10.2% | R139L (CGA→CTA) | cpxP → | inhibitor of the cpx response; periplasmic adaptor protein |
RA | 4,097,822 | G→T | 35.6% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,127,022 | T→G | 51.0% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,142,369 | A→T | 10.1% | Y220N (TAC→AAC) | ppc ← | phosphoenolpyruvate carboxylase |
RA | 4,143,544 | C→T | 6.0% | intergenic (‑518/+80) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,152,581 | T→C | 8.6% | V206V (GTA→GTG) | trmA ← | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
RA | 4,158,250 | A→C | 9.9% | intergenic (+122/‑50) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
RA | 4,164,396 | C→A | 6.0% | D187Y (GAT→TAT) | coaA ← | pantothenate kinase |
RA | 4,172,013 | G→A | 5.4% | D281N (GAC→AAC) | rpoB → | RNA polymerase, beta subunit |
RA | 4,175,869 | T→A | 13.2% | C198S (TGC→AGC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,176,823 | G→T | 42.1% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,211,803 | G→A | 33.0% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,212,014 | G→T | 7.0% | F134L (TTC→TTA) | arpA ← | ankyrin repeat protein |
RA | 4,219,527 | C→A | 7.1% | A182S (GCG→TCG) | pepE ← | (alpha)‑aspartyl dipeptidase |
RA | 4,230,913 | A→T | 29.2% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,246,967 | G→T | 6.3% | intergenic (+34/‑76) | dgkA → / → lexA | diacylglycerol kinase/transcriptional repressor of SOS regulon |
RA | 4,250,821 | C→A | 5.9% | Q99K (CAG→AAG) | yjbM → | uncharacterized protein |
RA | 4,271,152 | G→T | 11.8% | M415I (ATG→ATT) | yjcE → | putative cation/proton antiporter |
RA | 4,273,077 | C→A | 6.5% | intergenic (‑74/+104) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
RA | 4,273,158 | A→T | 11.6% | intergenic (‑155/+23) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
RA | 4,274,926 | A→C | 5.0% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,280,478 | T→G | 5.4% | I25M (ATT→ATG) | nrfD → | formate‑dependent nitrite reductase, membrane subunit |
RA | 4,286,083 | T→C | 5.9% | intergenic (+361/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,290,080 | G→T | 35.5% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,291,537 | G→T | 13.3% | I453I (ATC→ATA) | mdtO ← | membrane translocase (MDR) of MdtNOP efflux pump, PET family |
RA | 4,294,039 | A→G | 6.7% | I61T (ATT→ACT) | ytcA ← | putative inner membrane DUF1656 family protein; efflux pump associated |
RA | 4,295,572 | C→T | 5.9% | E281E (GAG→GAA) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
RA | 4,295,721 | A→G | 11.2% | Y232H (TAC→CAC) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
RA | 4,297,846 | C→A | 79.1% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,302,249 | T→A | 6.3% | Q187L (CAG→CTG) | alsR ← | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
RA | 4,303,256 | G→T | 9.1% | V30V (GTG→GTT) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,303,614 | T→A | 29.9% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,306,969 | T→A | 19.0% | N23Y (AAC→TAC) | phnM ← | ribophosphonate triphosphate hydrolase |
RA | 4,312,246 | C→A | 16.2% | intergenic (‑7/+14) | phnF ← / ← phnE | putative DNA‑binding transcriptional regulator of phosphonate uptake and biodegradation/defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
RA | 4,315,765 | A→G | 6.0% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
RA | 4,356,453 | C→A | 8.2% | P46P (CCG→CCT) | dcuA ← | C4‑dicarboxylate antiporter |
RA | 4,367,995 | G→A | 10.0% | P256L (CCC→CTC) | ampC ← | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
RA | 4,380,814 | C→A | 5.5% | A171A (GCG→GCT) | rsgA ← | ribosome small subunit‑dependent GTPase A |
RA | 4,382,806 | T→A | 12.5% | Q360L (CAA→CTA) | queG ← | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis |
RA | 4,388,902 | G→T | 53.7% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,396,598 | A→T | 53.5% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,413,425 | G→T | 5.2% | E255* (GAA→TAA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
RA | 4,431,847 | C→T | 5.4% | A49A (GCG→GCA) | msrA ← | methionine sulfoxide reductase A |
RA | 4,440,479 | C→T | 9.8% | A234V (GCG→GTG) | ytfQ → | galactofuranose binding proteint: periplasmic‑binding component of ABC superfamily |
RA | 4,450,473 | C→A | 6.3% | D669Y (GAC→TAC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
RA | 4,458,254 | T→A | 48.9% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 61.0% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,463,946 | C→A | 6.0% | V2V (GTC→GTA) | bdcR → | transcriptional repressor for divergent bdcA |
RA | 4,464,572 | G→T | 14.2% | intergenic (+38/‑107) | bdcR → / → tabA | transcriptional repressor for divergent bdcA/biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily |
RA | 4,469,550 | G→A | 28.7% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 49.5% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,478,322 | G→A | 5.7% | intergenic (+105/+56) | lptG → / ← yjgR | lipopolysaccharide export ABC permease of the LptBFGC export complex/DUF853 family protein with NTPase fold |
RA | 4,480,048 | G→A | 5.4% | A303A (GCC→GCT) | idnR ← | transcriptional repressor, 5‑gluconate‑binding |
RA | 4,489,542 | A→T | 10.2% | pseudogene (810/942 nt) | yjgX ← | pseudogene fragment |
RA | 4,493,546 | G→T | 5.7% | intergenic (‑298/‑329) | insG ← / → yjhB | IS4 transposase/putative transporter |
RA | 4,502,777 | G→A | 5.7% | N150N (AAC→AAT) | fecC ← | iron‑dicitrate transporter subunit |
RA | 4,505,471 | C→T | 6.6% | D342N (GAC→AAC) | fecA ← | ferric citrate outer membrane transporter |
RA | 4,510,428 | G→T | 21.7% | intergenic (‑287/+60) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
RA | 4,511,877 | G→A | 13.6% | intergenic (‑40/+67) | yjhF ← / ← yjhG | putative transporter/putative dehydratase |
RA | 4,512,693 | T→A | 58.5% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,521,271 | C→A | 6.8% | A66A (GCG→GCT) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
RA | 4,522,721 | C→A | 5.4% | D94Y (GAT→TAT) | yjhP ← | putative methyltransferase |
RA | 4,525,234 | G→A | 49.2% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,531,143 | A→T | 52.7% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,540,328 | G→T | 5.1% | I262I (ATC→ATA) | gntP ← | fructuronate transporter |
RA | 4,556,296 | C→T | 21.7% | Q256Q (CAG→CAA) | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
RA | 4,562,043 | C→A | 49.4% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,579,917 | C→A | 6.8% | A394S (GCG→TCG) | yjiY ← | putative transporter |
RA | 4,582,677 | G→T | 6.3% | E402* (GAA→TAA) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
RA | 4,584,381 | G→T | 57.8% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,588,471 | G→A | 6.8% | A263V (GCG→GTG) | opgB ← | phosphoglycerol transferases I and II |
RA | 4,601,014 | T→C | 11.5% | intergenic (+194/‑199) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
RA | 4,603,129 | T→G | 6.9% | V301G (GTT→GGT) | yjjU → | putative patatin‑like family phospholipase |
RA | 4,604,195 | A→G | 7.5% | intergenic (+118/+302) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,604,616 | C→A | 6.1% | G249C (GGC→TGC) | yjjW ← | putative pyruvate formate lyase activating enzyme |
JC | 4,615,993 | Δ3 bp | 5.9% | coding (265‑267/1383 nt) | radA → | DNA repair protein |
RA | 4,626,235 | G→T | 11.8% | E138* (GAA→TAA) | creB → | response regulator in two‑component regulatory system with CreC |
RA | 4,629,507 | C→A | 5.6% | R206L (CGC→CTC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
RA | 4,629,622 | C→A | 7.0% | A168S (GCC→TCC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373836 | 375121 | 1286 | 206 [204] | [203] 206 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 4100608 | 4101527 | 920 | 207 [202] | [204] 206 | [cdh]–tpiA | [cdh],tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 289472 | 223 (0.750) | 13 (0.040) | 11/274 | NT | 5.5% | coding (158/699 nt) | yagL | CP4‑6 prophage; DNA‑binding protein |
? | CP009273 | = 1463497 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | 360104 = | 235 (0.790) | 182 (0.610) | 98/276 | NT | 43.6% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 5597 (19.880) +TTAATTAA |
194/260 | NT | 95.7% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 267 (0.890) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 301 (1.010) | 5640 (28.400) +46 bp |
183/184 | NT | 96.8% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 253 (0.850) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 29 (0.100) | 21/276 | NT | 9.7% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | = 386403 | 271 (0.910) | pseudogene (697/1458 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 225 (0.750) | 130/276 | NT | 81.5% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 51 (0.170) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 47 (0.160) | 30/276 | NT | 14.8% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | 386399 = | 271 (0.910) | pseudogene (693/1458 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 235 (0.790) | 132/276 | NT | 82.2% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 51 (0.170) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 777033 = | 147 (0.490) | 74 (0.250) +G |
6/274 | NT | 27.7% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
? | CP009273 | = 2514488 | 242 (0.810) | noncoding (216/1345 nt) | IS186 | repeat region | |||||
* | ? | CP009273 | 1203246 = | 35 (0.120) | 211 (0.800) | 116/244 | NT | 85.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 39 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1203261 | 35 (0.120) | 232 (0.880) | 116/244 | NT | 86.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | = 1205058 | 39 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | 1635219 = | 145 (0.490) | 186 (0.630) | 103/272 | NT | 56.2% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 150 (0.500) | 145 (0.490) | 88/276 | NT | 49.2% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 3613151 | NA (NA) | 4 (0.010) | 4/258 | NT | 100% | coding (600/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
? | CP009273 | 3613476 = | 0 (0.000) | coding (925/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
* | ? | CP009273 | 3904514 = | 239 (0.800) | 44 (0.150) | 31/276 | NT | 15.5% | coding (372/1041 nt) | pstS | periplasmic phosphate binding protein, high‑affinity |
? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
* | ? | CP009273 | = 3904519 | 257 (0.860) | 34 (0.110) | 26/274 | NT | 11.8% | coding (367/1041 nt) | pstS | periplasmic phosphate binding protein, high‑affinity |
? | CP009273 | = 4489327 | NA (NA) | intergenic (+10/+83) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
* | ? | CP009273 | 4532499 = | 210 (0.700) | 31 (0.110) | 25/258 | NT | 11.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
? | CP009273 | 4532813 = | 294 (1.050) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
* | ? | CP009273 | = 4532507 | 214 (0.720) | 39 (0.140) | 29/258 | NT | 13.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
? | CP009273 | = 4532803 | 294 (1.050) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |