breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 874,860 G→A M221I (ATG→ATA)  yliI → aldose sugar dehydrogenase YliI
RA 1,431,900 G→A Q1048* (CAG→TAG)  nifJ ← pyruvate:ferredoxin (flavodoxin) oxidoreductase
JC 2,278,396 (TTATCGCCT)2→1 coding (542‑550/1761 nt) yejM → LPS biosynthesis‑modulating metalloenzyme YejM
MC JC 3,632,231 Δ75 bp coding (1230‑1304/1500 nt) pitA → inorganic phosphate transporter PitA
RA 4,257,489 T→A W150R (TGG→AGG)  tyrB → aromatic amino acid transaminase
JC 4,322,989 (CATGCC)1→2 coding (110/1101 nt) pmrB ← two‑component system sensor histidine kinase PmrB

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 219731 =1 (0.010)97 (0.970) 79/496 0.5 99.0% coding (412/576 nt) gmhB D‑glycero‑beta‑D‑manno‑heptose 1,7‑bisphosphate 7‑phosphatase
?NZ_CP009273 269666 = NA (NA)intergenic (+2/+146) ykfC/BW25113_RS01325 reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase
* ? NZ_CP009273 = 2197340 (0.000)96 (0.960) 84/496 0.3 100% coding (415/576 nt) gmhB D‑glycero‑beta‑D‑manno‑heptose 1,7‑bisphosphate 7‑phosphatase
?NZ_CP009273 = 270860 NA (NA)intergenic (‑68/‑176) BW25113_RS01325/mmuP IS5‑like element IS5 family transposase/S‑methylmethionine permease
* ? NZ_CP009273 1203246 =18 (0.180)74 (0.790) 66/464 0.8 78.4% coding (290/630 nt) BW25113_RS05990 protein StfP
?NZ_CP009273 1205075 = 24 (0.260)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 120326118 (0.180)68 (0.730) 62/464 1.1 76.9% coding (305/630 nt) BW25113_RS05990 protein StfP
?NZ_CP009273 = 1205058 24 (0.260)coding (57/540 nt) BW25113_RS06005 phage tail protein