breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 103,922 | Δ1 bp | coding (879/918 nt) | lpxC → | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase |
RA | 216,170 | Δ1 bp | coding (313/405 nt) | rcsF ← | Rcs stress response system protein RcsF |
RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
RA | 2,277,556 | (A)8→7 | intergenic (‑130/‑52) | yejK ← / → yejL | nucleoid‑associated protein YejK/YejL family protein |
RA | 3,047,003 | A→G | Y399Y (TAT→TAC) | pepP ← | Xaa‑Pro aminopeptidase |
RA | 3,332,444 | G→T | S55* (TCG→TAG) | mlaE ← | lipid asymmetry maintenance ABC transporter permease subunit MlaE |
RA | 4,105,107 | T→A | D134V (GAT→GTT) | glpX ← | class II fructose‑bisphosphatase |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 275032–275642 | 286941–286350 | 10709–11910 | 36 [35] | [35] 36 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
Unassigned new junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | 46 (0.570) | 47 (0.580) | 42/496 | 1.9 | 48.7% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 53 (0.660) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 100 (1.240) | 79/496 | 0.1 | 95.2% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3793704 | 5 (0.060) | coding (622/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
* | ? | NZ_CP009273 | = 3646589 | NA (NA) | 100 (1.250) | 88/494 | 0.0 | 96.2% | pseudogene (2/379 nt) | BW25113_RS18165 | hypothetical protein |
? | NZ_CP009273 | 3793700 = | 4 (0.050) | coding (626/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY |