mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 3,331,479 | Δ1 bp | coding (342/552 nt) | mlaD ← | outer membrane lipid asymmetry maintenance protein MlaD |
| RA | 3,489,117 | C→A | A583E (GCG→GAG) | nirB → | NADPH‑nitrite reductase large subunit |
| RA | 3,794,325 | T→G | M1M (ATG→CTG) † | rfaY ← | lipopolysaccharide core heptose(II) kinase RfaY |
| RA | 4,322,509 | A→C | L197R (CTG→CGG) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 274974–275643 | 287010–286345 | 10703–12037 | 153 [151] | [152] 153 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1203246 = | 41 (0.170) | 153 (0.690) | 126/464 | 1.7 | 79.0% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 43 (0.190) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 40 (0.170) | 179 (0.810) | 148/464 | 0.6 | 81.7% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 43 (0.190) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 281 (1.190) | 202/496 | 0.0 | 92.7% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3883933 | 22 (0.090) | coding (338/1248 nt) | tnaB | low affinity tryptophan permease TnaB | |||||
| * | ? | NZ_CP009273 | = 2283592 | NA (NA) | 236 (1.000) | 159/496 | 0.6 | 91.1% | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | 3883930 = | 23 (0.100) | coding (335/1248 nt) | tnaB | low affinity tryptophan permease TnaB | |||||