breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
RA | 1,236,683 | A→C | M282R (ATG→AGG) | cvrA ← | potassium/proton antiporter |
RA | 1,334,821 | G→A | E3K (GAG→AAG) | lapB → | lipopolysaccharide assembly protein LapB |
RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
RA | 3,330,552 | G→A | Q22* (CAG→TAG) | mlaB ← | lipid asymmetry maintenance protein MlaB |
RA | 4,323,610 | C→A | G53V (GGG→GTG) | basR ← | two‑component system response regulator BasR |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 275023–275637 | 286961–286346 | 10710–11939 | 40 [39] | [39] 40 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | 39 (0.500) | 51 (0.660) | 45/496 | 1.6 | 59.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 32 (0.410) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 2095230 = | NA (NA) | 103 (1.320) | 82/496 | 0.1 | 100% | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL |
? | NZ_CP009273 | 2123121 = | 0 (0.000) | coding (11/747 nt) | wcaE | colanic acid biosynthesis glycosyltransferase WcaE | |||||
* | ? | NZ_CP009273 | = 2123125 | 4 (0.050) | 89 (1.150) | 65/494 | 0.4 | 95.7% | coding (7/747 nt) | wcaE | colanic acid biosynthesis glycosyltransferase WcaE |
? | NZ_CP009273 | = 2283591 | NA (NA) | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
* | ? | NZ_CP009273 | 3576788 = | NA (NA) | 93 (1.190) | 84/496 | 0.0 | 94.9% | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein |
? | NZ_CP009273 | = 3794204 | 5 (0.060) | coding (122/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
* | ? | NZ_CP009273 | = 3577555 | NA (NA) | 83 (1.070) | 74/496 | 0.1 | 95.4% | intergenic (+15/‑209) | BW25113_RS17830/BW25113_RS25760 | IS1‑like element IS1A family transposase/protein YrhD |
? | NZ_CP009273 | 3794196 = | 4 (0.050) | coding (130/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY |