mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| MC JC | 3,336,676 | Δ4 bp | coding (482‑485/576 nt) | lptC → | LPS export ABC transporter periplasmic protein LptC |
| JC | 3,632,389 | (TAGATGGTGG)1→2 | coding (1388/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| RA | 3,962,399 | Δ1 bp | coding (9/1047 nt) | wzzE → | ECA polysaccharide chain length modulation protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 26 (0.420) | 44 (0.700) | 39/496 | 1.3 | 57.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 38 (0.610) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 16 (0.260) | 50 (0.860) | 47/464 | 0.5 | 75.2% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 18 (0.310) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 16 (0.260) | 29 (0.500) | 27/464 | 2.6 | 63.8% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 18 (0.310) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||