breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
RA | 2,652,045 | A→G | S84P (TCT→CCT) | hscA ← | Fe‑S protein assembly chaperone HscA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 275017–275641 | 286993–286348 | 10708–11977 | 51 [50] | [49] 51 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | 51 (0.510) | 69 (0.690) | 57/496 | 1.7 | 52.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 72 (0.720) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 12 (0.120) | 68 (0.730) | 64/464 | 0.9 | 84.4% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
? | NZ_CP009273 | 1205075 = | 14 (0.150) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 12 (0.120) | 78 (0.840) | 69/464 | 0.6 | 86.1% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
? | NZ_CP009273 | = 1205058 | 14 (0.150) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | 2277591 = | 1 (0.010) | 131 (1.310) | 101/496 | 0.1 | 99.2% | intergenic (‑165/‑17) | yejK/yejL | nucleoid‑associated protein YejK/YejL family protein |
? | NZ_CP009273 | 2282398 = | NA (NA) | pseudogene (3/2532 nt) | yejO | autotransporter YejO | |||||
* | ? | NZ_CP009273 | = 2277594 | 2 (0.020) | 127 (1.270) | 98/496 | 0.1 | 98.5% | intergenic (‑168/‑14) | yejK/yejL | nucleoid‑associated protein YejK/YejL family protein |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |