breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
RA | 914,594 | C→T | intergenic (‑54/‑97) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
RA | 914,597 | Δ1 bp | intergenic (‑57/‑94) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
RA | 915,366 | A→G | K226E (AAA→GAA) | macA → | macrolide transporter subunit MacA |
RA | 1,325,522 | T→G | V73G (GTT→GGT) | topA → | type I DNA topoisomerase |
RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
RA | 1,946,511 | A→T | intergenic (+41/‑12) | yecE → / → yecN | DUF72 domain‑containing protein/MAPEG family protein |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 387307–388428 | 397243 | 8816–9937 | 71 [70] | [0] 145 | [BW25113_RS01920]–[phoA] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,BW25113_RS25915,iraP,[phoA] |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | 63 (0.490) | 83 (0.640) | 69/496 | 2.2 | 51.5% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 93 (0.720) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | = 388422 | NA (NA) | 144 (1.120) | 125/494 | 0.0 | 100% | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
? | NZ_CP009273 | 397244 = | 0 (0.000) | coding (42/1416 nt) | phoA | alkaline phosphatase | |||||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 142 (1.100) | 114/496 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3799566 | 0 (0.000) | coding (862/1125 nt) | rfaG | lipopolysaccharide glucosyltransferase I | |||||
* | ? | NZ_CP009273 | = 3646590 | NA (NA) | 127 (0.990) | 111/496 | 0.2 | 94.8% | pseudogene (3/379 nt) | BW25113_RS18165 | hypothetical protein |
? | NZ_CP009273 | 3799563 = | 7 (0.050) | coding (865/1125 nt) | rfaG | lipopolysaccharide glucosyltransferase I |