breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 874,860 G→A M221I (ATG→ATA yliI → aldose sugar dehydrogenase YliI
RA 914,594 C→T intergenic (‑54/‑97) ybjX ← / → macA VirK/YbjX family protein/macrolide transporter subunit MacA
RA 914,597 Δ1 bp intergenic (‑57/‑94) ybjX ← / → macA VirK/YbjX family protein/macrolide transporter subunit MacA
RA 915,366 A→G K226E (AAA→GAA)  macA → macrolide transporter subunit MacA
RA 1,325,522 T→G V73G (GTT→GGT)  topA → type I DNA topoisomerase
RA 1,431,900 G→A Q1048* (CAG→TAG)  nifJ ← pyruvate:ferredoxin (flavodoxin) oxidoreductase
RA 1,946,511 A→T intergenic (+41/‑12) yecE → / → yecN DUF72 domain‑containing protein/MAPEG family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 387307–388428 397243 8816–9937 71 [70] [0] 145 [BW25113_RS01920]–[phoA] [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,BW25113_RS25915,iraP,[phoA]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =63 (0.490)83 (0.640) 69/496 2.2 51.5% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 93 (0.720)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 388422NA (NA)144 (1.120) 125/494 0.0 100% intergenic (‑65/‑7) BW25113_RS01920/BW25113_RS01930 IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein
?NZ_CP009273 397244 = 0 (0.000)coding (42/1416 nt) phoA alkaline phosphatase
* ? NZ_CP009273 2282398 =NA (NA)142 (1.100) 114/496 0.1 100% pseudogene (3/2532 nt) yejO autotransporter YejO
?NZ_CP009273 = 3799566 0 (0.000)coding (862/1125 nt) rfaG lipopolysaccharide glucosyltransferase I
* ? NZ_CP009273 = 3646590NA (NA)127 (0.990) 111/496 0.2 94.8% pseudogene (3/379 nt) BW25113_RS18165 hypothetical protein
?NZ_CP009273 3799563 = 7 (0.050)coding (865/1125 nt) rfaG lipopolysaccharide glucosyltransferase I