mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 915,286 | C→T | T199I (ACT→ATT) | macA → | macrolide transporter subunit MacA |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 3,794,146 | C→A | K60N (AAG→AAT) | rfaY ← | lipopolysaccharide core heptose(II) kinase RfaY |
| RA | 3,994,633 | A→C | *19S (TAA→TCA) | ysgD → | protein YsgD |
| RA | 4,322,097 | C→A | L334F (TTG→TTT) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 387322–388428 | 393888 | 5461–6567 | 42 [41] | [0] 96 | [BW25113_RS01920]–[yaiW] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,[yaiW] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 52 (0.550) | 56 (0.600) | 49/496 | 2.0 | 50.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 60 (0.640) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 388422 | NA (NA) | 96 (1.020) | 89/496 | 0.1 | 100% | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
| ? | NZ_CP009273 | 393889 = | 0 (0.000) | coding (562/1095 nt) | yaiW | surface‑exposed outer membrane lipoprotein YaiW | |||||
| * | ? | NZ_CP009273 | 1203246 = | 13 (0.140) | 58 (0.660) | 56/464 | 1.1 | 86.5% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 6 (0.070) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 13 (0.140) | 80 (0.910) | 73/464 | 0.3 | 89.8% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 6 (0.070) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||