mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 103,231 | G→A | C63Y (TGT→TAT) | lpxC → | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase |
| RA | 667,478 | T→G | L55F (TTA→TTC) | lptE ← | LPS assembly lipoprotein LptE |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 914,598 | +T | intergenic (‑58/‑93) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 4,322,729 | C→T | E124K (GAA→AAA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 43 (0.480) | 46 (0.510) | 42/496 | 2.5 | 50.3% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 48 (0.540) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 10 (0.110) | 63 (0.750) | 57/464 | 0.9 | 87.9% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 8 (0.100) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 10 (0.110) | 65 (0.780) | 61/464 | 0.7 | 88.2% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 8 (0.100) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391495 | NA (NA) | 92 (1.030) | 77/496 | 0.3 | 98.9% | intergenic (+146/‑127) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | = 1796931 | 1 (0.010) | intergenic (‑104/‑420) | thrS/espL1 | threonine‑‑tRNA ligase/type III secretion system effector EspL1 | |||||
| * | ? | NZ_CP009273 | 1796928 = | 1 (0.010) | 73 (0.820) | 65/496 | 0.7 | 98.7% | intergenic (‑101/‑423) | thrS/espL1 | threonine‑‑tRNA ligase/type III secretion system effector EspL1 |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 99 (1.110) | 74/496 | 0.4 | 99.0% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3801098 = | 1 (0.010) | coding (397/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 99 (1.110) | 79/494 | 0.2 | 98.0% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3801102 | 2 (0.020) | coding (393/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | 3123505 = | NA (NA) | 370 (4.140) | 259/496 | 0.0 | 79.6% | coding (34/1137 nt) | yghO | protein YghO |
| ? | NZ_CP009273 | = 3185768 | 95 (1.060) | coding (202/630 nt) | yqiJ | DUF1449 family protein | |||||