breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,105,612 | 0 | A | C | 25.0% | 43.0 / 17.1 | 28 | L20R (CTG→CGG) | cpxR | DNA‑binding transcriptional dual regulator CpxR |
Marginal new junction evidence (sorted from low to high skew) | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 884986 | 21 (0.650) | 3 (0.100) | 3/400 | 3.5 | 6.8% | coding (245/285 nt) | ybjH | uncharacterized protein YbjH |
? | NC_000913 | = 3753944 | 62 (2.010) | coding (156/1137 nt) | yiaV | putative membrane fusion protein YiaV | |||||
* | ? | NC_000913 | = 3428288 | NA (NA) | 3 (0.090) | 3/418 | 3.6 | 20.1% | noncoding (475/1542 nt) | rrsD | 16S ribosomal RNA |
? | NC_000913 | = 3491734 | 12 (0.370) | coding (564/573 nt) | ppiA | peptidyl‑prolyl cis‑trans isomerase A | |||||
* | ? | NC_000913 | 2637043 = | 32 (0.990) | 3 (0.090) | 3/418 | 3.6 | 9.1% | coding (314/1473 nt) | der | 50S ribosomal subunit stability factor |
? | NC_000913 | 2637097 = | 28 (0.870) | coding (260/1473 nt) | der | 50S ribosomal subunit stability factor | |||||
* | ? | NC_000913 | 2170171 = | NA (NA) | 3 (0.090) | 3/420 | 3.6 | 8.8% | noncoding (1/1258 nt) | IS3 | repeat region |
? | NC_000913 | = 4003842 | 31 (0.960) | coding (337/891 nt) | rarD | putative transporter RarD |