breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
JC JC | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA5 ← / → uspC | IS1 family protein InsA/universal stress protein C |
RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
RA | 3,966,600 | T→C | F62L (TTT→CTT) | rho → | transcription termination factor Rho |
RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1052066 | 1052069 | 4 | 4 [2] | [0] 3 | ymcE | protein YmcE |
* | * | ÷ | NC_000913 | 1142406 | 1142441 | 36 | 4 [2] | [2] 3 | rne | ribonuclease E |
* | * | ÷ | NC_000913 | 1835588 | 1835666 | 79 | 3 [2] | [2] 3 | ynjA | AhpD‑like domain‑containing protein YnjA |
* | * | ÷ | NC_000913 | 2125047 | 2125157 | 111 | 3 [2] | [2] 3 | wcaI | colanic acid biosynthesis fucosyltransferase WcaI |
* | * | ÷ | NC_000913 | 2229020 | 2229037 | 18 | 3 [2] | [2] 3 | yohP | putative membrane protein YohP |
* | * | ÷ | NC_000913 | 3423889–3424234 | 3424455–3424239 | 6–567 | 3 [2] | [2] 4 | rrlD | 23S ribosomal RNA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 274333 | NA (NA) | 3 (0.120) | 3/320 | 2.6 | NA | noncoding (817/1195 nt) | IS5 | repeat region |
? | NC_000913 | 274341 = | NA (NA) | noncoding (809/1195 nt) | IS5 | repeat region | |||||
* | ? | NC_000913 | 1207790 = | 31 (1.220) | 11 (0.480) | 11/288 | 0.8 | 35.5% | coding (290/630 nt) | ycfK | protein StfP |
? | NC_000913 | 1209619 = | 12 (0.520) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
* | ? | NC_000913 | = 1207805 | 31 (1.220) | 8 (0.350) | 8/288 | 1.2 | 28.6% | coding (305/630 nt) | ycfK | protein StfP |
? | NC_000913 | = 1209602 | 12 (0.520) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
* | ? | NC_000913 | = 1299498 | 0 (0.000) | 20 (0.800) | 17/312 | 0.4 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |