breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9[crl] insB9, insA9, [crl]
MC JC 1,978,503 Δ776 bp insB5insA5 insB5, insA5
JC JC 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA5 ← / → uspC IS1 family protein InsA/universal stress protein C
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 3,966,600 T→C F62L (TTT→CTT)  rho → transcription termination factor Rho
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1052066 1052069 4 4 [2] [0] 3 ymcE protein YmcE
* * ÷ NC_000913 1142406 1142441 36 4 [2] [2] 3 rne ribonuclease E
* * ÷ NC_000913 1835588 1835666 79 3 [2] [2] 3 ynjA AhpD‑like domain‑containing protein YnjA
* * ÷ NC_000913 2125047 2125157 111 3 [2] [2] 3 wcaI colanic acid biosynthesis fucosyltransferase WcaI
* * ÷ NC_000913 2229020 2229037 18 3 [2] [2] 3 yohP putative membrane protein YohP
* * ÷ NC_000913 3423889–3424234 3424455–3424239 6–567 3 [2] [2] 4 rrlD 23S ribosomal RNA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 274333NA (NA)3 (0.120) 3/320 2.6 NA noncoding (817/1195 nt) IS5 repeat region
?NC_000913 274341 = NA (NA)noncoding (809/1195 nt) IS5 repeat region
* ? NC_000913 1207790 =31 (1.220)11 (0.480) 11/288 0.8 35.5% coding (290/630 nt) ycfK protein StfP
?NC_000913 1209619 = 12 (0.520)intergenic (‑500/‑66) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? NC_000913 = 120780531 (1.220)8 (0.350) 8/288 1.2 28.6% coding (305/630 nt) ycfK protein StfP
?NC_000913 = 1209602 12 (0.520)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? NC_000913 = 12994980 (0.000)20 (0.800) 17/312 0.4 100% intergenic (+253/‑69) ychE/insH21 MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
?NC_000913 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein