Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,411 +C coding (494/516 nt) b4555 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,4101.C98.2% 870.7 / 4.5 227coding (493/516 nt)b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (1/3);  new base C (102/121);  total (103/124)
Fisher's exact test for biased strand distribution p-value = 6.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

Only 100 of 229 total aligned reads displayed.

CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAGGCCATGCGCTGGAAGGCTGGCG‑‑‑‑AACTGGCTACAGCTGAAGGATTGATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGAAAGCTGCATTATGGGCAGTGGCCA  >  NC_000913/4008343‑4008494
                                                                            |                                                                                           
cTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                                                       <  2:3761128/96‑1 (MQ=255)
 tGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                                                      <  1:6839357/96‑2 (MQ=255)
 tGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                                                      <  2:2926582/96‑2 (MQ=255)
 tGTCTGGAAGTGATGGCGGGCGGAGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                                                      <  1:12583935/96‑2 (MQ=255)
  gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                     <  2:5241731/96‑3 (MQ=255)
  gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                     <  1:9864495/96‑3 (MQ=255)
  gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                     >  2:10400554/1‑94 (MQ=255)
  gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                                                     >  2:9040325/1‑94 (MQ=255)
   tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                                                                    >  1:3449894/1‑93 (MQ=255)
   tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                                                                    >  2:7833193/1‑93 (MQ=255)
    cTGGATGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                                                                   <  1:4762551/96‑5 (MQ=255)
    cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                                                                   <  2:7567338/96‑5 (MQ=255)
            gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                                                           <  1:1072092/96‑1 (MQ=255)
            gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                                                           <  1:11217018/96‑1 (MQ=255)
            gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                                                           <  2:1225594/96‑1 (MQ=255)
            gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGAGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                                                           <  2:1017290/96‑1 (MQ=255)
             aTGGCGGGCGGCGTTTCAAAAGGCCGTGCGCTGGACGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTGTTGCGTTTGGTGACGGGATg                                                          <  2:6118481/96‑1 (MQ=255)
             aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                                                          <  1:13060395/96‑1 (MQ=255)
             aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                                                          <  2:161048/96‑1 (MQ=255)
             aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                                                          <  1:11708699/96‑1 (MQ=255)
              tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa                                                         >  2:4766450/1‑96 (MQ=255)
               ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGACGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGTTGaa                                                        >  1:12912062/1‑96 (MQ=255)
               ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTCCAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                                                        >  2:9543973/1‑96 (MQ=255)
                gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                                                       <  1:10467316/96‑1 (MQ=255)
                 cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                                                      <  1:4331098/96‑1 (MQ=255)
                 cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                                                      <  2:2577626/96‑1 (MQ=255)
                 cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                                                      <  1:2013842/96‑1 (MQ=255)
                 cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                                                      <  1:13978146/96‑1 (MQ=255)
                 cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                                                      >  1:13181770/1‑96 (MQ=255)
                 cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGAGTTTGGTGACGGGATGAacg                                                      >  2:9604794/1‑96 (MQ=255)
                  gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                                                     <  1:6963532/96‑1 (MQ=255)
                  gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                                                     >  2:10446427/1‑96 (MQ=255)
                  gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                                                     >  2:6681137/1‑96 (MQ=255)
                  gggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                                                     <  1:380389/96‑1 (MQ=255)
                   ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                                                    >  1:12862918/1‑96 (MQ=255)
                   ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                                                    >  2:11684656/1‑96 (MQ=255)
                   ggcggcGTATCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGAGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgtc                                                    <  1:7369695/96‑3 (MQ=255)
                    gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg                                                   <  2:12997738/96‑1 (MQ=255)
                     cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAAcgccgc                                                  <  1:781157/96‑1 (MQ=255)
                     cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc                                                  <  2:6956805/96‑1 (MQ=255)
                     cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc                                                  >  1:7288324/1‑96 (MQ=255)
                      ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGAGGcc                                                 >  1:792971/1‑96 (MQ=255)
                      ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc                                                 >  1:7394350/1‑96 (MQ=255)
                      ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGATACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc                                                 <  1:11448052/96‑1 (MQ=255)
                      ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGGGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc                                                 >  2:1886487/1‑96 (MQ=255)
                       gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg                                                >  2:4457700/1‑96 (MQ=255)
                        cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa                                               >  1:4703266/1‑96 (MQ=255)
                        cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa                                               <  2:11320077/96‑1 (MQ=255)
                        cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa                                               >  1:4288595/1‑96 (MQ=255)
                         gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                              <  1:10187737/96‑1 (MQ=255)
                         gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                              >  2:7698105/1‑96 (MQ=255)
                         gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                              >  2:13238161/1‑96 (MQ=255)
                         gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                              <  2:5625116/96‑1 (MQ=255)
                         gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa                                              >  1:5021815/1‑96 (MQ=255)
                           ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                            <  2:10664278/92‑1 (MQ=255)
                           ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                            <  1:1861003/92‑1 (MQ=255)
                           ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt                                            >  1:3199527/5‑96 (MQ=255)
                            tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGTTTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                           >  1:2924063/4‑96 (MQ=255)
                            tcaaaaGGCCATGCGCTGGAAGCAGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg                                           <  1:10058740/93‑1 (MQ=255)
                             caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCATGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc                                          >  1:2711779/3‑96 (MQ=255)
                              aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAAGGACGCGGAAATGCt                                         >  1:1281826/2‑96 (MQ=255)
                              aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGca                                         <  1:4128963/95‑2 (MQ=255)
                              aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt                                         >  1:3482551/2‑96 (MQ=255)
                                aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt                                       <  1:5889603/96‑1 (MQ=255)
                                aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt                                       <  1:4934091/96‑1 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTCTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      <  1:9429715/96‑1 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGtt                                      <  1:8861793/96‑2 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      >  1:3023630/1‑96 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      >  2:8011587/1‑96 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      <  1:1435467/96‑1 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      <  1:1745716/96‑1 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      >  1:6322331/1‑96 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      <  2:422780/96‑1 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      <  2:13878938/96‑1 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      >  2:1856400/1‑96 (MQ=255)
                                 aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc                                      >  1:4364937/1‑96 (MQ=255)
                                  ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTct                                     <  2:9449805/96‑2 (MQ=255)
                                  ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCg                                     <  2:8897623/96‑1 (MQ=255)
                                  ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCg                                     <  2:8494437/96‑1 (MQ=255)
                                                               actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg        <  2:5353717/92‑1 (MQ=255)
                                                               actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg        <  2:6198175/92‑1 (MQ=255)
                                                                ctgggCTACAGCCTGATGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt       >  1:1375344/4‑96 (MQ=255)
                                                                ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt       <  2:2115822/93‑1 (MQ=255)
                                                                ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt       >  2:12899592/4‑96 (MQ=255)
                                                                ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt       <  2:4202135/93‑1 (MQ=255)
                                                                ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt       >  2:3489403/4‑96 (MQ=255)
                                                                 tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg      >  2:14020536/3‑96 (MQ=255)
                                                                 tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg      >  1:9543118/3‑96 (MQ=255)
                                                                 tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg      >  2:7302958/3‑96 (MQ=255)
                                                                  gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc     <  1:8225197/95‑2 (MQ=255)
                                                                   ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcg    >  1:7076684/1‑94 (MQ=255)
                                                                   ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcg    <  1:13238161/96‑3 (MQ=255)
                                                                   ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcg    >  2:2281011/1‑94 (MQ=255)
                                                                   ggCTACAGCGTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcg    <  2:13437271/96‑3 (MQ=255)
                                                                     gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcgc   <  2:7099420/96‑4 (MQ=255)
                                                                     gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcgc   <  2:3449894/96‑4 (MQ=255)
                                                                      cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGCAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcgca  <  1:517515/96‑5 (MQ=255)
                                                                      cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcgca  >  2:198723/1‑92 (MQ=255)
                                                                       tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCAttgt              <  1:14250077/83‑3 (MQ=255)
                                                                       tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTAt              >  2:14250077/1‑83 (MQ=255)
                                                                            |                                                                                           
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAGGCCATGCGCTGGAAGGCTGGCG‑‑‑‑AACTGGCTACAGCTGAAGGATTGATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGAAAGCTGCATTATGGGCAGTGGCCA  >  NC_000913/4008343‑4008494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: