Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,031,984 +C coding (1250/1299 nt) trkH → TrkH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,031,9831.C99.2% 1892.0 / 3.3 497coding (1249/1299 nt)trkHTrkH
Reads supporting (aligned to +/- strand):  ref base . (1/3);  new base C (255/237);  total (256/241)
Fisher's exact test for biased strand distribution p-value = 3.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 543 total aligned reads displayed.

GGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTT  >  NC_000913/4031888‑4032073
                                                                                                 |                                                                                          
 gAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGTTGGCGATTATCGc                                                                                           <  1:10964643/96‑1 (MQ=255)
   aacgcgCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTATCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGcca                                                                                         >  1:13014166/3‑94 (MQ=255)
   aTCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGcca                                                                                         <  1:5719771/96‑3 (MQ=255)
   aTCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGcca                                                                                         <  2:11014577/96‑3 (MQ=255)
     cgcgCATCGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGccacg                                                                                       <  2:12937183/96‑5 (MQ=255)
     cgcgCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGccacg                                                                                       <  1:10018437/96‑5 (MQ=255)
     cgcgCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGccacg                                                                                       >  2:10566332/1‑92 (MQ=255)
     cgcgCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGccacg                                                                                       <  1:14234046/96‑5 (MQ=255)
        gcccTGGCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                                     <  1:6869641/93‑1 (MQ=255)
        gcACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                                     <  2:6047520/96‑1 (MQ=255)
        gcACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                                     <  2:4048279/96‑1 (MQ=255)
        gcACTGCCGGAACGTATCCTCGAAGCCGGTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                                     >  2:10720070/1‑96 (MQ=255)
         cACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCg                                                                                    >  1:6307407/1‑96 (MQ=255)
          aCTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGt                                                                                   <  2:22946/96‑1 (MQ=255)
           cTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTCTTTATTGTCAGTATGCTGGCCATTATCGCCACGGCCGTg                                                                                  <  1:12635454/96‑1 (MQ=255)
            tGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTgg                                                                                 <  2:10282059/96‑1 (MQ=255)
            tGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTgg                                                                                 >  1:7412959/1‑96 (MQ=255)
             gCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGa                                                                                >  2:12597576/1‑96 (MQ=255)
              ccGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCCCGGGCGTGGAt                                                                               <  2:4327717/96‑1 (MQ=255)
                ggAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGa                                                                             >  1:7285931/1‑96 (MQ=255)
                   gcGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                                          >  1:8848403/2‑96 (MQ=255)
                    cGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACttt                                                                         >  1:6084077/1‑96 (MQ=255)
                       aTCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                                      <  1:13479027/96‑1 (MQ=255)
                       aTCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                                      <  2:6228394/96‑1 (MQ=255)
                        tCCGCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTg                                                                     <  2:5814118/96‑1 (MQ=255)
                         ccTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGc                                                                    >  1:4082837/1‑96 (MQ=255)
                         ccTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGc                                                                    >  1:8167253/1‑96 (MQ=255)
                           tggAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCt                                                                  >  1:11122993/3‑96 (MQ=255)
                           tCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCt                                                                  >  1:13360383/1‑96 (MQ=255)
                              aaGCCGTTTGGGGGTTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGGTGACTTTTCTGCCTTTg                                                               >  1:4366408/1‑96 (MQ=255)
                               aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGc                                                              >  1:4616948/1‑96 (MQ=255)
                               aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGc                                                              >  1:10224100/1‑96 (MQ=255)
                                gCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCg                                                             >  2:5503509/1‑96 (MQ=255)
                                gCCGTATGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACTGGCGTGGATGACTTTTCTGCCTTTGCg                                                             <  2:12722525/96‑1 (MQ=255)
                                 ccGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGt                                                            >  2:952716/1‑96 (MQ=255)
                                  cGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTc                                                           <  1:9984996/96‑1 (MQ=255)
                                  cGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTc                                                           <  1:9532727/96‑1 (MQ=255)
                                  cGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTc                                                           <  2:4781648/96‑1 (MQ=255)
                                   gTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCg                                                          <  1:927/96‑1 (MQ=255)
                                     ttGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATCACTTTTCTGCCTTTGCGTCGgt                                                        >  1:14125771/1‑96 (MQ=255)
                                      tGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgtt                                                       >  2:2964213/1‑96 (MQ=255)
                                        gggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgt                                                     <  2:9362243/96‑1 (MQ=255)
                                        gggATTTTTCTCCGCCTATGCAATGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCGCGGGCGTGGATGCCTTTTCTGCCTTTGCGTCGgttgt                                                     <  2:2136899/96‑1 (MQ=255)
                                         ggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgtt                                                    <  1:9818229/96‑1 (MQ=255)
                                           gtttttCTCCGCCTATGCATTGGTGTTTATTGGCAGTATGCTGGCGATTATCGCCACGGGCGTGGAGGACTTTTCTGCCTTTGGGTCGGTGGTTGc                                                  >  1:2138753/2‑96 (MQ=255)
                                             ttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGa                                                >  1:7785019/1‑96 (MQ=255)
                                                tatcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACAt                                             >  1:10658934/3‑96 (MQ=255)
                                                 ctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACAtt                                            <  2:2750757/96‑1 (MQ=255)
                                                  tcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTg                                           >  2:10797278/1‑96 (MQ=255)
                                                  tcCGCCTATGCATTGCTGTTTATTGTCAGTATGCTGGCGATTATCGGCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTg                                           <  1:3287573/96‑1 (MQ=255)
                                                     gCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAAt                                        >  2:4611071/1‑96 (MQ=255)
                                                     gCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAAt                                        <  2:14423871/96‑1 (MQ=255)
                                                     gCCTATGCATGGGTGTTTATTTTCAGTAGGCTGGCGATTATCGCCACGGGCGTGTATGACTTGTCGGCCTTTGCGTCGGTTGTTGCGACATTGCAt                                        >  1:5049129/1‑96 (MQ=255)
                                                      ccTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATa                                       >  1:4826046/1‑96 (MQ=255)
                                                       cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATaa                                      <  2:11463066/96‑1 (MQ=255)
                                                       cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATaa                                      >  1:8491669/1‑96 (MQ=255)
                                                       cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATaa                                      <  2:14311781/96‑1 (MQ=255)
                                                       cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTAGCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCATCGGTTGTTGCGACATTGAATaa                                      >  2:10176468/1‑96 (MQ=255)
                                                           gCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTg                                  >  2:698799/1‑96 (MQ=255)
                                                           gCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTg                                  >  1:5584781/1‑96 (MQ=255)
                                                            cATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgg                                 >  2:13538732/1‑96 (MQ=255)
                                                            cATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTCGCGTCGGTTGTTGCGACATTGAATAACCTgg                                 <  1:10379429/96‑1 (MQ=255)
                                                             aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTggg                                <  2:11893217/96‑1 (MQ=255)
                                                              ttGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgggg                               >  1:8383707/1‑96 (MQ=255)
                                                               tGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGc                              <  1:13706656/96‑1 (MQ=255)
                                                               tGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGc                              <  2:1224563/96‑1 (MQ=255)
                                                                      tATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCt                       >  2:6813344/1‑96 (MQ=255)
                                                                       aTTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCtt                      <  1:2474815/96‑1 (MQ=255)
                                                                         tGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTgg                    >  1:114119/1‑96 (MQ=255)
                                                                         tGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTgg                    >  1:1518181/1‑96 (MQ=255)
                                                                         tGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTgg                    >  2:3299813/1‑96 (MQ=255)
                                                                          gTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGTCTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATACCCTGGGGCCAGGGCTTGGc                   <  1:2753035/96‑1 (MQ=255)
                                                                          gTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGc                   >  2:5640381/1‑96 (MQ=255)
                                                                           tCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCg                  >  1:12369038/1‑96 (MQ=255)
                                                                            cAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGTCATTGAATAACCTGGGGCCAGGGCTTGGCGt                 >  1:11692020/1‑96 (MQ=255)
                                                                            cAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGt                 >  2:1924508/1‑96 (MQ=255)
                                                                            cAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGt                 >  2:9120279/1‑96 (MQ=255)
                                                                             aGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGtt                >  2:1323515/1‑95 (MQ=255)
                                                                             aGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTg                >  2:8504752/1‑96 (MQ=255)
                                                                             aGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTg                >  2:8206730/1‑96 (MQ=255)
                                                                              gTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTgg               >  2:8871167/1‑96 (MQ=255)
                                                                              gTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTgg               >  2:2498725/1‑96 (MQ=255)
                                                                               tATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGt              >  2:3558290/1‑96 (MQ=255)
                                                                               tATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGt              <  2:14125771/96‑1 (MQ=255)
                                                                                aTGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGtt             <  1:6630443/96‑1 (MQ=255)
                                                                                 tGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTg            >  2:1647484/1‑96 (MQ=255)
                                                                                   cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCt          >  2:3080/1‑96 (MQ=255)
                                                                                   cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCt          <  1:8003966/96‑1 (MQ=255)
                                                                                   cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCt          >  2:639810/1‑96 (MQ=255)
                                                                                   cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCt          <  1:5358886/96‑1 (MQ=255)
                                                                                      gCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGAt       <  2:4961124/96‑1 (MQ=255)
                                                                                      gCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGAt       <  2:7819957/96‑1 (MQ=255)
                                                                                        gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATaa     >  1:2995272/1‑96 (MQ=255)
                                                                                        gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATa      <  1:1840190/95‑1 (MQ=255)
                                                                                        gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGGTGCTGATaa     >  1:3746094/1‑96 (MQ=255)
                                                                                        gATTATCGCCACGGGCGGGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGAGaa     >  1:6544471/1‑96 (MQ=255)
                                                                                          ttATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACt   >  2:2092290/1‑96 (MQ=255)
                                                                                           tATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACtt  <  2:7334420/96‑1 (MQ=255)
                                                                                           tATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACtt  >  1:11969610/1‑96 (MQ=255)
                                                                                           tATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACtt  <  2:13751423/96‑1 (MQ=255)
                                                                                                 |                                                                                          
GGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTTGGCGTGGTTGCTGATAACTT  >  NC_000913/4031888‑4032073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: