Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,729,373 +C intergenic (‑195/+247) rrsG ← / ← clpB 16S ribosomal RNA/ClpB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,729,3711.C99.6% 992.3 / ‑3.8 267intergenic (‑193/+249)rrsG/clpB16S ribosomal RNA/ClpB
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base C (157/109);  total (157/110)
Fisher's exact test for biased strand distribution p-value = 4.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 272 total aligned reads displayed.

ATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG  >  NC_000913/2729305‑2729461
                                                                   |                                                                                          
aTAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATCCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt                                                                <  1:7577500/96‑1 (MQ=0)
aTAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt                                                                <  2:2028519/96‑1 (MQ=0)
 tAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt                                                               >  2:8930893/1‑96 (MQ=9)
  aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtgt                                                              <  1:11749556/96‑3 (MQ=0)
  aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGGGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCttt                                                              >  1:6415275/1‑96 (MQ=255)
   aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt                                                             >  2:943395/1‑96 (MQ=16)
    aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtc                                                            <  1:4249527/96‑1 (MQ=255)
     ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct                                                           >  2:2091974/1‑96 (MQ=255)
     ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct                                                           <  2:12328026/96‑1 (MQ=255)
      tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc                                                          <  1:1338041/96‑1 (MQ=255)
       gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtcttt                                                         <  1:10571309/96‑3 (MQ=255)
       gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct                                                         >  2:12504675/1‑96 (MQ=255)
       gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct                                                         >  1:5527009/1‑96 (MQ=255)
       gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct                                                         >  2:13142221/1‑96 (MQ=255)
       gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct                                                         <  1:12100113/96‑1 (MQ=255)
        ttAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                                                        <  2:5726350/96‑1 (MQ=255)
        ttAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                                                        <  2:8188088/96‑1 (MQ=255)
        ttAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                                                        <  2:5150583/96‑1 (MQ=255)
        ttAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                                                        <  2:6149141/96‑1 (MQ=255)
        ttAAAGAGCAGTGACGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                                                        >  1:2276830/1‑96 (MQ=255)
         tAAAGAGCGGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                                                       >  2:12962577/1‑96 (MQ=255)
         tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                                                       <  1:13833282/96‑1 (MQ=255)
         tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                                                       <  1:1309703/96‑1 (MQ=255)
         tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                                                       <  1:12906865/96‑1 (MQ=255)
         tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                                                       >  1:6204774/1‑96 (MQ=255)
          aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATTATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt                                                      <  2:10281961/96‑1 (MQ=255)
           aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtgg                                                     <  1:9378897/96‑3 (MQ=255)
           aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg                                                     <  2:4669017/96‑1 (MQ=255)
            agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                    <  2:5814491/96‑1 (MQ=255)
            agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGGGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                    >  2:14260362/1‑96 (MQ=255)
            agagCAGTGCCGCCTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                    >  1:10939321/1‑96 (MQ=255)
             gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag                                                   >  2:5035886/1‑96 (MQ=255)
              agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCCCTGTTgaga                                                  <  1:9230061/96‑1 (MQ=255)
               gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt                                                 <  1:3569914/96‑1 (MQ=255)
               gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt                                                 <  2:2602742/96‑1 (MQ=255)
                cAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCAGAATACGCTTTCCCGCTACAGAGTCAAGCAGTTCTTTGCTTTTCTCTGTTGAGAtt                                                >  1:6680383/1‑96 (MQ=17)
                cAGGGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTAAAGCATTTCTTTGCTTTTCTCTGTTGATAtt                                                >  2:6458928/1‑96 (MQ=14)
                 aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCGTAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                               >  2:3570699/1‑96 (MQ=255)
                 aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                               <  1:2632380/96‑1 (MQ=255)
                 aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                               >  1:8462172/1‑96 (MQ=255)
                  gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct                                              >  1:4843459/1‑96 (MQ=255)
                  gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct                                              <  2:3419809/96‑1 (MQ=255)
                   tGCGGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc                                             >  2:10101682/1‑96 (MQ=255)
                   tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc                                             >  2:4468879/1‑96 (MQ=255)
                   tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc                                             >  2:1120667/1‑96 (MQ=255)
                   tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc                                             <  1:1265597/96‑1 (MQ=255)
                    gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa                                            <  1:2775055/96‑1 (MQ=255)
                      cgcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                          >  1:453852/1‑96 (MQ=255)
                       gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga                                         >  2:2182991/1‑96 (MQ=255)
                        cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGCCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag                                        >  1:5736637/1‑96 (MQ=255)
                        cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGACTTCCCGCTACAGAGTCAAGCATTTCTTTGCTGTTCTCTGTTGAGATTCTCAGgag                                        >  1:10175250/1‑96 (MQ=17)
                        cttcgcttTTTCTCAGCGGCGCGGGGAGTGCCTAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag                                        >  1:9458968/1‑96 (MQ=18)
                         ttcgcttTTTCTCAGCGGCGCGTGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga                                       <  1:5451708/96‑1 (MQ=255)
                         ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga                                       <  2:420192/96‑1 (MQ=255)
                         ttcgcttTTTCTCAGCGGCGCGGCGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga                                       <  1:10371221/96‑1 (MQ=255)
                           cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAc                                     <  1:463977/96‑1 (MQ=255)
                            gcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc                                    >  1:9747910/1‑96 (MQ=255)
                            gcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc                                    >  1:13208338/1‑96 (MQ=255)
                             cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAccc                                   >  2:13297505/1‑96 (MQ=255)
                              tttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTCTTGAGACTCTCAGGAGATcccc                                  >  1:3196111/1‑96 (MQ=17)
                               ttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccg                                 >  2:6732602/1‑96 (MQ=255)
                                tttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgc                                >  1:8567352/1‑96 (MQ=255)
                                 ttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgcc                               <  1:14212558/96‑1 (MQ=255)
                                  tctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgccg                              >  1:7796132/1‑96 (MQ=255)
                                   ctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGa                             >  2:11438567/1‑96 (MQ=255)
                                     cAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAcc                           >  2:7350506/1‑96 (MQ=255)
                                      aGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc                          <  2:7743487/96‑1 (MQ=255)
                                      aGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc                          >  2:7952553/1‑96 (MQ=255)
                                        cggcgCGGGGTGTGCATAATGCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGTTTCTCAGGAGAACCCCGCCGACCcgg                        <  1:12203815/96‑1 (MQ=18)
                                         ggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc                       >  2:10793571/1‑96 (MQ=255)
                                         ggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc                       >  2:11569819/1‑96 (MQ=255)
                                          gcgcGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcg                      >  1:1527556/1‑96 (MQ=255)
                                            gcgGGGTTTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTTAGATTCTCAGGAGAACCCCGCCGACCCggcggc                    <  1:11221355/96‑1 (MQ=21)
                                               ggttgtgCATAATACTCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg                 <  2:6705847/93‑1 (MQ=21)
                                               gggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGGgtg                 >  1:9919945/1‑96 (MQ=255)
                                                ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCTCCGACCCGGCGGCgtgt                <  2:4018860/96‑1 (MQ=255)
                                                ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtgt                >  1:8235564/1‑96 (MQ=255)
                                                ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtgg                >  1:6874142/1‑95 (MQ=255)
                                                ggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGATTTTCTCTGTTGAGATTCTCAGGAGAACCCCTCCGACCCGGCGGCgtgt                <  2:1024395/96‑1 (MQ=18)
                                                  tgtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt              <  1:4105198/96‑1 (MQ=255)
                                                  tgtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCACCGACCCGGCGGCGTGttt              <  1:7289135/96‑1 (MQ=255)
                                                   gtgCATAATACGCCTTCCCTCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg             <  2:1397188/96‑1 (MQ=255)
                                                   gtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg             >  2:2311030/1‑96 (MQ=255)
                                                   gtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGGTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg             >  2:11661695/1‑96 (MQ=255)
                                                    tgCATAATACGCCTTCCCGCTACAGAGTCAGGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc            <  2:14142550/96‑1 (MQ=255)
                                                     gCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc           <  1:1760214/96‑1 (MQ=255)
                                                      cATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg          >  2:3174191/1‑96 (MQ=255)
                                                       ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGTCGACCCGGCGGCGTGTTTGCCgt         >  1:10065633/1‑96 (MQ=255)
                                                       ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt         >  2:8543854/1‑96 (MQ=255)
                                                       ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt         >  2:13438033/1‑96 (MQ=255)
                                                       ataataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt         <  2:13927281/96‑1 (MQ=255)
                                                        taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGACCCCCGCCGACCCGGCGGCGTGTTTGCCgtt        <  1:2957338/96‑1 (MQ=255)
                                                        taataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt        <  2:10953767/96‑1 (MQ=255)
                                                        taataCGCCTTCCCGCTACAGAGTCAAGCACTTCTTTGCTTTCCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt        <  2:7624582/96‑1 (MQ=18)
                                                          ataCGCCTTCCCGGTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt      >  1:13876467/1‑96 (MQ=255)
                                                          ataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt      >  2:11886966/1‑96 (MQ=255)
                                                          ataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt      >  2:12219562/1‑96 (MQ=255)
                                                          ataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgt      >  2:808654/1‑96 (MQ=255)
                                                           taCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGTTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt     <  2:12861159/96‑1 (MQ=255)
                                                              gCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCg  >  1:2001592/1‑96 (MQ=255)
                                                                   |                                                                                          
ATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG  >  NC_000913/2729305‑2729461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑