Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,158,202 +C coding (961/975 nt) ygiRQ ← Fe‑S oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,158,2011.C99.4% 1951.0 / 0.9 518coding (962/975 nt)ygiRQFe‑S oxidoreductase
Reads supporting (aligned to +/- strand):  ref base . (0/3);  new base C (228/287);  total (228/290)
Fisher's exact test for biased strand distribution p-value = 2.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 581 total aligned reads displayed.

AAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAG  >  NC_000913/3158106‑3158293
                                                                                                |                                                                                            
aaaaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAg                                                                                               <  2:2779534/96‑1 (MQ=255)
 aaaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGc                                                                                             >  1:6991676/1‑96 (MQ=255)
 aaaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGc                                                                                             <  2:2122350/96‑1 (MQ=255)
  aaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACCCATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGcc                                                                                            <  2:6156723/96‑2 (MQ=255)
  aaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGcc                                                                                            >  1:6369183/1‑95 (MQ=255)
    cGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGcctg                                                                                          >  2:14141489/1‑93 (MQ=255)
       tGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGggt                                                                                        <  2:12412277/96‑1 (MQ=255)
        gTCCAACTCTTCGGTATAAAACGCAATGGCAGTCGGGTTGATCCACCAATAACGGTCGCCTTGTTTTTGCATCAATGCGCGTGCACAGCCTGggtt                                                                                       <  1:11163503/96‑1 (MQ=255)
         tCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGggttg                                                                                      <  1:3179822/96‑1 (MQ=255)
           cATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGggttggt                                                                                    <  2:8837314/96‑1 (MQ=255)
            aTCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGggttggtt                                                                                   <  1:11625722/96‑1 (MQ=255)
            aTCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGggttggtt                                                                                   >  2:13554395/1‑96 (MQ=255)
             tctcTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGttt                                                                                  <  1:9689305/96‑1 (MQ=255)
              ctctTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTc                                                                                 <  2:12007802/96‑1 (MQ=255)
              ctctTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCAACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTc                                                                                 >  1:10242925/1‑96 (MQ=255)
               tctTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCg                                                                                >  1:6802435/1‑96 (MQ=255)
                ctTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCgt                                                                               >  1:4068625/1‑96 (MQ=255)
                 ttCGGTAGAAAGCGGCATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCgtg                                                                              <  1:6563024/96‑1 (MQ=255)
                 ttCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCgtg                                                                              <  2:3401319/96‑1 (MQ=255)
                   cGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCgtggt                                                                            <  2:13101227/96‑1 (MQ=255)
                   cGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCgtggt                                                                            <  2:11333991/96‑1 (MQ=255)
                    ggTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCgtggtg                                                                           <  1:50103/96‑1 (MQ=255)
                     gTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGc                                                                          <  1:1774937/96‑1 (MQ=255)
                      tAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCa                                                                         <  2:5994596/96‑1 (MQ=255)
                      tAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCa                                                                         >  2:10715532/1‑96 (MQ=255)
                      tAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGCTGGTTTCGTGGTGCa                                                                         >  2:12912618/1‑96 (MQ=255)
                       aGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAg                                                                        <  2:5120949/96‑1 (MQ=255)
                          aaGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAAt                                                                     <  2:7228898/96‑1 (MQ=255)
                           aGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATa                                                                    <  2:3818415/96‑1 (MQ=255)
                            gCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATAc                                                                   <  1:8382289/96‑1 (MQ=255)
                             ctgAATAGCCGGCGGGCTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATAcg                                                                  >  1:10776390/3‑96 (MQ=255)
                              ggAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATAcgc                                                                 >  1:9921103/1‑96 (MQ=255)
                               gAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATAcgcg                                                                <  2:13300081/96‑1 (MQ=255)
                               gAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATAcgcg                                                                >  2:9716407/1‑96 (MQ=255)
                               gAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATAcgcg                                                                >  1:1353689/1‑96 (MQ=255)
                               gAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGGTTCGTGGTGCAGAATAcgcg                                                                >  1:12404560/1‑96 (MQ=255)
                                 aTAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGaa                                                              <  2:13975932/96‑1 (MQ=255)
                                  tAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAg                                                             >  1:588811/1‑96 (MQ=255)
                                  tAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAg                                                             >  2:14216213/1‑96 (MQ=255)
                                    gCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGGATACGCGAAGCa                                                           >  1:14180638/1‑96 (MQ=255)
                                      aggaggGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATg                                                         <  2:3961868/96‑1 (MQ=255)
                                       ggCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATgg                                                        >  1:7846650/1‑96 (MQ=255)
                                        gCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGCTTCGTGGTGCAGAATACGCGAAGCATggg                                                       >  1:7451317/1‑96 (MQ=255)
                                         caggTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGGTTCGTGGTGCAGAATACGCGAAGCATGGGc                                                      >  1:560788/3‑96 (MQ=255)
                                         cGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGc                                                      <  1:14380072/96‑1 (MQ=255)
                                          gggTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCg                                                     >  2:675104/1‑96 (MQ=255)
                                          gggTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCg                                                     >  2:8429647/1‑96 (MQ=255)
                                            gTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGCTTCGTGGTGCAGAATACGCGAAGCATGGGCGTa                                                   >  1:8717078/1‑96 (MQ=255)
                                             ttGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTAc                                                  <  2:4838732/96‑1 (MQ=255)
                                             ttGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGGGCAGAATACGCGAAGCATGGGCGTAc                                                  >  2:9543457/1‑96 (MQ=255)
                                              tGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACa                                                 >  2:4642130/1‑96 (MQ=255)
                                              tGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACa                                                 >  2:224495/1‑96 (MQ=255)
                                                aTCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGc                                               >  2:4233910/1‑96 (MQ=255)
                                                aTCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGc                                               >  2:1855935/1‑96 (MQ=255)
                                                aTCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGc                                               >  2:12094372/1‑96 (MQ=255)
                                                aTCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGc                                               >  1:1596796/1‑96 (MQ=255)
                                                 tCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCa                                              >  2:8644902/1‑96 (MQ=255)
                                                 tCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCa                                              <  2:2494108/96‑1 (MQ=255)
                                                 tCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCa                                              <  2:5261357/96‑1 (MQ=255)
                                                   cacacaTAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACt                                            <  1:11012502/96‑1 (MQ=255)
                                                    acacaTAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACtt                                           <  1:1060705/96‑1 (MQ=255)
                                                      ccaTAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTa                                         <  2:6878781/95‑1 (MQ=255)
                                                      acaTAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTa                                         <  1:5736099/96‑1 (MQ=255)
                                                       caTAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTAt                                        >  2:1112070/1‑96 (MQ=255)
                                                         tAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCg                                      >  1:10022000/1‑96 (MQ=255)
                                                          aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCgg                                     <  1:13874577/96‑2 (MQ=255)
                                                           gCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGcc                                    >  2:9312808/1‑96 (MQ=255)
                                                            cGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGccc                                   >  1:2961401/1‑96 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGACTACGCGAAGCATGGGCGTACAGCACTTTATccccat                                  >  2:5849266/1‑94 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCt                                  >  2:7077391/1‑96 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCt                                  <  1:3455253/96‑1 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCt                                  >  1:13059670/1‑96 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCt                                  >  2:11732249/1‑96 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTCGTGCAGAATAAGCGAAGCATGGGCGTACAGCACTTTATCGCCCt                                  >  1:7172581/1‑96 (MQ=255)
                                                             ggTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGGTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCt                                  >  2:3052249/1‑96 (MQ=255)
                                                              gTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCtt                                 >  1:61009/1‑96 (MQ=255)
                                                               tCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCCTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTc                                <  2:12762529/96‑1 (MQ=255)
                                                                cGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCa                               <  1:1952016/96‑1 (MQ=255)
                                                                      gtTTTTGCATCAATGCGCGGGCACAGCCTGCGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTtct                         <  1:12735557/96‑1 (MQ=255)
                                                                       tttttGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTtctc                        <  1:11945331/96‑1 (MQ=255)
                                                                        ttgtGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCg                       <  2:9092268/93‑1 (MQ=255)
                                                                          ttGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGaa                     >  2:7988903/1‑96 (MQ=255)
                                                                           tGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGaaa                    >  1:2376518/1‑96 (MQ=255)
                                                                           tGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGaaa                    <  2:1665312/96‑1 (MQ=255)
                                                                            gCATCAATGCGCGGTCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCTTGGGCGTACAGCACTTTATCGTCCTTCACTTTCTCGAaag                   >  1:4839099/1‑96 (MQ=255)
                                                                            gCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAaag                   >  1:8909732/1‑96 (MQ=255)
                                                                             cATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAaaga                  <  1:3741815/96‑1 (MQ=255)
                                                                             cATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAaaga                  >  1:7315909/1‑96 (MQ=255)
                                                                             cATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATAGCCCTTCACTTTCTCGAaaga                  >  2:10545823/1‑96 (MQ=255)
                                                                                 aaTGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGgc              <  1:4388767/96‑1 (MQ=255)
                                                                                  aTGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAACATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGgca             <  2:10287554/96‑1 (MQ=255)
                                                                                   tGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGgcag            <  1:52837/96‑1 (MQ=255)
                                                                                      gcgGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCaa         >  1:9315430/1‑96 (MQ=255)
                                                                                      gcgGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCaa         <  2:8195102/96‑1 (MQ=255)
                                                                                       cgGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAac        >  2:7534774/1‑96 (MQ=255)
                                                                                        gggCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAaca       >  1:2672172/1‑96 (MQ=255)
                                                                                        gggCACAGCCTGGGTTGGTTTCGTGGGGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAaca       >  2:149856/1‑96 (MQ=255)
                                                                                         ggCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAacac      <  2:5557324/96‑1 (MQ=255)
                                                                                          gCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACg     <  1:421440/96‑1 (MQ=255)
                                                                                           cacaGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGt    >  2:10093846/1‑96 (MQ=255)
                                                                                                |                                                                                            
AAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAG  >  NC_000913/3158106‑3158293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: