Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,418,840 +G coding (1070/1089 nt) b3269 → putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,418,8371.G99.2% 1830.9 / 3.9 474coding (1067/1089 nt)b3269putative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base G (221/249);  total (223/251)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01

Only 100 of 543 total aligned reads displayed.

CCAGTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGC  >  NC_000913/3418742‑3418927
                                                                                                |                                                                                          
ccagTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAc                                                                                             <  2:3319470/96‑1 (MQ=255)
 cagTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACg                                                                                           >  2:5182964/1‑96 (MQ=255)
 cagTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACg                                                                                           <  2:6081526/96‑1 (MQ=255)
  agTATCTCAACATCGTCAAAAGCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGACTCAGACgg                                                                                          <  2:12961747/96‑1 (MQ=255)
  agTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACgg                                                                                          <  2:1227663/96‑1 (MQ=255)
   gTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACggg                                                                                         <  2:8928842/96‑1 (MQ=255)
   gTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACggg                                                                                         <  2:6727090/96‑1 (MQ=255)
    tATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACgggg                                                                                        >  1:4168986/1‑95 (MQ=255)
     aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACggggc                                                                                       <  1:4292959/96‑3 (MQ=255)
       ctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACggggcaa                                                                                     >  2:4221736/1‑92 (MQ=255)
         cAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGc                                                                                    <  2:4728369/96‑1 (MQ=255)
          aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGcc                                                                                   <  2:5436763/96‑1 (MQ=255)
          aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGcc                                                                                   <  2:10453815/96‑1 (MQ=255)
           aCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCa                                                                                  <  1:13249862/96‑1 (MQ=255)
           aCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCa                                                                                  <  1:2267114/96‑1 (MQ=255)
             aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATc                                                                                <  1:1148287/96‑1 (MQ=255)
             aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATc                                                                                >  2:5671146/1‑96 (MQ=255)
              ttgTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGACATCg                                                                               >  1:11804464/3‑96 (MQ=255)
               cGTCAAAAACTCCTCTCTTGCCGCCGCTATTGACTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCga                                                                              <  1:5809921/96‑1 (MQ=255)
                gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCgag                                                                             >  1:6136507/1‑96 (MQ=255)
                 tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCgaga                                                                            <  1:13688223/96‑1 (MQ=255)
                 tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCgaga                                                                            >  2:11904382/1‑96 (MQ=255)
                  cAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGAc                                                                           >  1:10908940/1‑96 (MQ=255)
                  cAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCAGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGAc                                                                           >  1:2826081/1‑96 (MQ=255)
                   aaaacCTCCTCCCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGGGCAAGCCATCGAGACg                                                                          <  1:3692041/96‑1 (MQ=255)
                   aaaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACg                                                                          >  1:7038797/1‑96 (MQ=255)
                     aacctcctcTCTTGCCTCCGCTATTGGCTATCCCGATATGGTTTCGCTGATTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGAt                                                                        <  1:14217598/93‑1 (MQ=255)
                     aacctcctcCCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGAt                                                                        <  1:7761242/93‑1 (MQ=255)
                      accccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATa                                                                       <  2:7290959/92‑1 (MQ=255)
                         tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGcc                                                                    >  2:4350707/1‑96 (MQ=255)
                          cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCa                                                                   >  2:1956347/1‑96 (MQ=255)
                          cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCa                                                                   >  2:13544807/1‑96 (MQ=255)
                          cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCa                                                                   <  1:6316503/96‑1 (MQ=255)
                          cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCa                                                                   <  1:7096068/96‑1 (MQ=255)
                           ctctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCAt                                                                  <  2:1806923/96‑1 (MQ=255)
                             ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGa                                                                <  1:14090721/96‑1 (MQ=255)
                              tctTGCCGCCGCTATTGGCTATCCGGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGAc                                                               <  2:10147243/96‑1 (MQ=255)
                               ctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGAcc                                                              <  1:5382456/96‑1 (MQ=255)
                                 tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCAt                                                            <  1:3295264/96‑1 (MQ=255)
                                 tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCAt                                                            <  1:9249870/96‑1 (MQ=255)
                                  gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCacg                                                           <  1:10581818/96‑3 (MQ=255)
                                  gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATg                                                           <  2:11838765/96‑1 (MQ=255)
                                   ctgccgcTATTGGCTTGCCCGATCTGGTTTCGCTTTTTGCCGGCACCGTGCTGAATCAGACGGGGAAAGCCATCGAGACGATAGCCATGACCATGt                                                          <  1:10327467/94‑1 (MQ=255)
                                   ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGt                                                          <  2:8796922/96‑1 (MQ=255)
                                    cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTc                                                         >  1:9799529/1‑96 (MQ=255)
                                    cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTc                                                         <  2:3580695/96‑1 (MQ=255)
                                    cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTc                                                         >  1:10028319/1‑96 (MQ=255)
                                     gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCg                                                        >  2:9421684/1‑96 (MQ=255)
                                      ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGAACATGGCgg                                                       >  1:8317740/1‑96 (MQ=255)
                                       cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                      <  1:7471455/96‑1 (MQ=255)
                                       cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGt                                                      >  2:812703/1‑96 (MQ=255)
                                        gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTc                                                     >  2:3398332/1‑96 (MQ=255)
                                         cTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt                                                    <  2:633811/96‑1 (MQ=255)
                                          tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTa                                                   >  2:7089918/1‑96 (MQ=255)
                                            ttGGGTATCCCGATATGGGTTCGCTGTTTGCCGGCACCGGGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                                                 >  1:12615141/1‑96 (MQ=255)
                                            ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                                                 <  2:1572961/96‑1 (MQ=255)
                                             tGGCTATCCCGATATGGTTACGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                                                >  2:12776199/1‑96 (MQ=255)
                                               gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa                                              >  2:3869442/1‑96 (MQ=255)
                                                  ttCCCGAAATGGTTTCGCTGTTTGCCTGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTa                                           <  1:21380/95‑1 (MQ=255)
                                                  aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTa                                           <  2:11281399/96‑1 (MQ=255)
                                                    cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                                         <  2:405904/96‑1 (MQ=255)
                                                    cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                                         >  1:13911459/1‑96 (MQ=255)
                                                    cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                                         >  2:13658976/1‑96 (MQ=255)
                                                      cGATATGGTTTCTATGTTTGCCGGCACCGTGCTGAATCAGGCGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg                                       <  1:4471449/96‑1 (MQ=255)
                                                      cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATGTGATTATCAg                                       >  1:5220040/1‑96 (MQ=255)
                                                      cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg                                       >  1:14313710/1‑96 (MQ=255)
                                                       gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc                                      >  2:10996721/1‑96 (MQ=255)
                                                       gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACAATAGCCATGACCATGTCGGTCTATCTGATTATCAGc                                      <  1:12930221/96‑1 (MQ=255)
                                                        atatGTTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc                                     <  1:439478/96‑1 (MQ=255)
                                                         tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                                    >  1:8229808/1‑96 (MQ=255)
                                                         tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                                    >  1:4940725/1‑96 (MQ=255)
                                                          atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTg                                   >  1:8588162/1‑96 (MQ=255)
                                                            ggTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGAc                                 >  1:899457/1‑96 (MQ=255)
                                                             gTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACt                                <  1:7234578/96‑1 (MQ=255)
                                                              tttCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTa                               >  1:6065336/1‑96 (MQ=255)
                                                               ttCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt                              >  1:6546181/1‑96 (MQ=255)
                                                                tCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc                             >  2:3054905/1‑96 (MQ=255)
                                                                 cGCTGTTTGCCGGCACCGTGCTGAACCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct                            <  1:4038185/96‑1 (MQ=255)
                                                                  gCTGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctt                           <  1:11328711/96‑2 (MQ=255)
                                                                   ctttttCCCGCCACCTTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg                          <  1:9565500/93‑1 (MQ=255)
                                                                    tatttGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgc                         >  1:11090841/3‑96 (MQ=255)
                                                                    tGTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgc                         >  1:12451140/1‑96 (MQ=255)
                                                                     gTTTGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct                        <  2:1164676/96‑1 (MQ=255)
                                                                      tttGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctg                       <  2:9569709/96‑1 (MQ=255)
                                                                      tttGCCGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctg                       >  2:2727995/1‑96 (MQ=255)
                                                                          ccGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga                   >  1:12171035/1‑96 (MQ=255)
                                                                           cGGCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgat                  >  2:5051112/1‑96 (MQ=255)
                                                                            ggCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCGCGCTGCtgatg                 >  1:1554744/1‑96 (MQ=255)
                                                                            ggCACCGTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGACTATCAGCCTGACTATCTCGCTGCtgatg                 <  2:13883697/96‑1 (MQ=255)
                                                                            agCACCGTGCTGAGTCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg                 >  1:13849394/2‑96 (MQ=255)
                                                                                ccGTGCTGAATCAGACGGGGCAAGCAATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata             <  2:2924625/96‑1 (MQ=255)
                                                                                  gtggtgAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATc           >  2:12578324/1‑96 (MQ=255)
                                                                                  gTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATc           <  2:1414070/96‑1 (MQ=255)
                                                                                  gTGCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATc           <  2:2420198/96‑1 (MQ=255)
                                                                                   tGCTGAATCAGACGGGGAAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCt          <  1:2994719/96‑1 (MQ=255)
                                                                                    gCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta         <  1:1825019/96‑1 (MQ=255)
                                                                                    gCTGAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGGCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta         >  2:7753645/1‑96 (MQ=255)
                                                                                       gAATCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTTATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATaa      >  1:2653725/1‑96 (MQ=255)
                                                                                        attCAGACGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAc     <  1:5622434/94‑1 (MQ=255)
                                                                                        aaTCAGAGGGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAc     <  1:9964303/96‑1 (MQ=255)
                                                                                                |                                                                                          
CCAGTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGC  >  NC_000913/3418742‑3418927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: