Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,537,405 +GC intergenic (+61/‑394) b3407 → / → feoA hypothetical protein/ferrous iron transport protein A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,537,4041.C98.8% 1536.0 / 7.4 408intergenic (+60/‑395)b3407/feoAhypothetical protein/ferrous iron transport protein A
Reads supporting (aligned to +/- strand):  ref base . (1/4);  new base C (209/194);  total (210/198)
Fisher's exact test for biased strand distribution p-value = 2.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01
*NC_0009133,537,4042.G98.8% 1509.3 / 7.2 407intergenic (+60/‑395)b3407/feoAhypothetical protein/ferrous iron transport protein A
Reads supporting (aligned to +/- strand):  ref base . (1/4);  new base G (208/194);  total (209/198)
Fisher's exact test for biased strand distribution p-value = 2.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01

Only 100 of 457 total aligned reads displayed.

GATGCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA  >  NC_000913/3537309‑3537490
                                                                                                  ||                                                                                        
gatgCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAGCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGACAGATAAGGCGTT‑‑Ca                                                                                            <  1:12882995/96‑1 (MQ=255)
 atgCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCAGGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑c                                                                                         <  2:13914130/96‑1 (MQ=255)
 atgCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑c                                                                                         <  1:6431758/96‑1 (MQ=255)
 atgCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑c                                                                                         <  1:11923854/96‑1 (MQ=255)
  tgCGCTCGCCGCGCCAATGGTCAAAAAACGTGAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑Catg                                                                                          <  1:10645225/96‑3 (MQ=255)
    cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cgcc                                                                                      <  2:9618731/96‑4 (MQ=255)
     gcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cgccg                                                                                     >  2:801544/1‑92 (MQ=255)
           ggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTg                                                                               >  2:8641709/1‑96 (MQ=38)
           ggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTg                                                                               >  1:9190077/1‑96 (MQ=38)
           ggcggcAATGGGAAAAACACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCCCGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTg                                                                               <  2:7181253/96‑1 (MQ=37)
             tggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGc                                                                             <  1:13485033/95‑1 (MQ=38)
             cggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGc                                                                             >  1:12423837/1‑96 (MQ=38)
             cggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGc                                                                             <  2:8923398/96‑1 (MQ=38)
             acgcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGc                                                                             >  1:11776763/3‑96 (MQ=37)
               gcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaa                                                                           <  1:10456006/96‑1 (MQ=38)
                cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaac                                                                          >  1:7462566/1‑96 (MQ=38)
                cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCGGGCaac                                                                          >  2:4076119/1‑96 (MQ=37)
                cAATGGGCAAAAAACGTTAAACCCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaac                                                                          <  2:1723597/96‑1 (MQ=37)
                 aaggggCAAAAATCTGTAAACCCCGGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGTCAGATAAGCCGTT‑‑CACGC‑‑CGCATCTGGCaacg                                                                         <  1:9763808/93‑1 (MQ=21)
                 aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTATGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacg                                                                         <  1:12726204/96‑1 (MQ=37)
                 aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacg                                                                         >  1:7167482/1‑96 (MQ=38)
                 aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacg                                                                         >  2:9885685/1‑96 (MQ=38)
                 aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacg                                                                         <  2:11757040/96‑1 (MQ=38)
                  aTGGGCGAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTTGCaacga                                                                        >  2:11238057/1‑96 (MQ=37)
                   tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacgaa                                                                       >  1:10027496/1‑96 (MQ=38)
                    gggCAAAAAACGTTAAACGCCGGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacgaac                                                                      <  2:1281604/96‑1 (MQ=37)
                    gggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGGAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCaacgaac                                                                      >  1:3648793/1‑96 (MQ=38)
                      gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCCCGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGc                                                                    <  1:11646992/96‑1 (MQ=37)
                      gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGc                                                                    >  1:623662/1‑96 (MQ=38)
                       cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGcc                                                                   <  2:6164017/96‑1 (MQ=38)
                       cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGcc                                                                   <  1:11397932/96‑1 (MQ=38)
                       cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCGGGCAACGAACGcc                                                                   >  1:4673339/1‑96 (MQ=37)
                        aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCt                                                                  >  1:8413563/1‑96 (MQ=38)
                        aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCt                                                                  <  1:6843436/96‑1 (MQ=38)
                         aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCTCGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCtt                                                                 <  2:8269603/96‑1 (MQ=37)
                         aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCtt                                                                 >  1:13617744/1‑96 (MQ=38)
                           aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGc                                                               >  2:4351842/1‑96 (MQ=38)
                           aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGc                                                               <  2:4925089/96‑1 (MQ=38)
                             aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCt                                                             <  1:8728217/96‑1 (MQ=38)
                             aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCt                                                             >  1:1740499/1‑96 (MQ=38)
                                ttAACCGCCCGTACTGGCTTACGGTTCGAATTTGCACGAAATCGTAGGGAAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGAc                                                          <  2:7019668/96‑1 (MQ=37)
                                      gCCCGTACGGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATaaaa                                                    <  1:11081108/96‑1 (MQ=37)
                                       cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                   >  2:1200915/1‑96 (MQ=38)
                                       cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                   <  2:4209614/96‑1 (MQ=38)
                                       cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                   >  1:3489469/1‑96 (MQ=38)
                                        ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt                                                  <  2:3216294/96‑1 (MQ=38)
                                         cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                                 >  1:2762473/1‑96 (MQ=38)
                                         cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                                 <  1:14414402/96‑1 (MQ=38)
                                          gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGGAACGAACGCCTTGCCTGACATAAAAGTGc                                                >  1:6656850/1‑96 (MQ=37)
                                          gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc                                                >  1:9633707/1‑96 (MQ=38)
                                          gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc                                                >  2:1992786/1‑96 (MQ=38)
                                           tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc                                               <  1:3194244/96‑1 (MQ=38)
                                           tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc                                               >  2:123400/1‑96 (MQ=38)
                                             cTGGCCTACGGTTGGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg                                             <  1:801544/96‑1 (MQ=37)
                                             cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg                                             <  2:2583222/96‑1 (MQ=38)
                                             cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg                                             >  1:7066150/1‑96 (MQ=38)
                                              tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGACTGATAGGGCGTT‑‑CACGC‑‑CGTGTCTGGCACCGACCGCCTTGCCTGACATAAAAGTGCCGga                                            <  1:14016314/96‑1 (MQ=255)
                                               ggacTACGGTTCGAATATGCACGAAAACGTAGGGCAGATAAGGCGTC‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag                                           <  2:9288209/93‑1 (MQ=37)
                                                 ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                         >  1:1307519/1‑96 (MQ=38)
                                                 ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                         >  2:5563089/1‑96 (MQ=38)
                                                 ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                         >  1:3110714/1‑96 (MQ=38)
                                                  cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAat                                        <  2:5143369/96‑1 (MQ=38)
                                                  cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAat                                        <  1:252/96‑1 (MQ=38)
                                                  cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAat                                        <  2:13575552/96‑1 (MQ=38)
                                                    aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat                                      >  1:8249849/1‑96 (MQ=38)
                                                    aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat                                      >  1:10221503/1‑96 (MQ=38)
                                                    aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat                                      >  2:7657836/1‑96 (MQ=38)
                                                     cGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc                                     >  2:4995154/1‑96 (MQ=38)
                                                      ggTTCGATTTGCCACGAATTCGGGGGGCAGATAGGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct                                    <  2:2517701/96‑1 (MQ=25)
                                                      ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct                                    >  2:7512605/1‑96 (MQ=38)
                                                      ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct                                    <  2:5803315/96‑1 (MQ=38)
                                                      ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct                                    >  1:14182972/1‑96 (MQ=38)
                                                        ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                                  <  1:5843358/96‑1 (MQ=38)
                                                        tacGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                                  >  1:9379476/3‑96 (MQ=37)
                                                          cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCgg                                >  1:1622614/1‑96 (MQ=38)
                                                           gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc                               >  2:14287117/1‑96 (MQ=38)
                                                           gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc                               >  1:2260018/1‑96 (MQ=38)
                                                            aaTTTCCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa                              <  2:8367098/96‑1 (MQ=37)
                                                             aTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAt                             >  1:10859975/1‑96 (MQ=38)
                                                              tttGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt                            <  2:10706970/96‑1 (MQ=38)
                                                                   aCGAAATAGTGGGGCAGATAAGGCTTTAACG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt                       <  1:5168090/96‑1 (MQ=255)
                                                                    cGAAATCGTAGGGCAGATAAGGCGGT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCGGGAGAATATCTCCGGCATTTTTAtt                      >  1:2103956/1‑96 (MQ=37)
                                                                     gAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGCGAATATCTCCGGCATTTTTATTc                     >  2:6776146/1‑96 (MQ=37)
                                                                     gAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc                     >  2:10272824/1‑96 (MQ=38)
                                                                         tCGTAGGTCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca                 <  2:11123443/96‑1 (MQ=37)
                                                                         tCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGACCGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca                 <  2:3700231/96‑1 (MQ=37)
                                                                         tCGTAGGGCAGATAAGGCGTC‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca                 <  1:121263/96‑1 (MQ=38)
                                                                         tCGTAGGCTAGATAAGGCGTC‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca                 <  1:4899630/96‑1 (MQ=37)
                                                                          cGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAg                <  2:10156708/96‑1 (MQ=38)
                                                                           gTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc               <  2:13414578/96‑1 (MQ=38)
                                                                           gTAGGGCAGATAAGGCGTT‑‑CA‑‑CGACGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc               <  1:10120247/96‑1 (MQ=39)
                                                                            tAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGcc              <  2:2324196/96‑1 (MQ=38)
                                                                             aGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa             >  2:13662829/1‑96 (MQ=38)
                                                                             aGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa             <  1:4255037/96‑1 (MQ=38)
                                                                               ggCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa           <  2:6453585/96‑1 (MQ=38)
                                                                                gCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc          >  1:5433771/1‑96 (MQ=39)
                                                                                   gATAAGGCGTTCCCG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCa       <  2:2831817/96‑1 (MQ=255)
                                                                                    aTAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat      <  1:4351842/96‑1 (MQ=39)
                                                                                     tacggCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCata     <  1:4151525/93‑1 (MQ=39)
                                                                                       aGGCGTT‑‑CACTC‑‑CGCATCTGGCAACGAACTCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCataat   <  1:388168/96‑1 (MQ=255)
                                                                                                  ||                                                                                        
GATGCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA  >  NC_000913/3537309‑3537490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: