Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,544,357 +G coding (163/1314 nt) gntT → gluconate permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,544,3561.G99.5% 1399.9 / ‑1.3 362coding (162/1314 nt)gntTgluconate permease
Reads supporting (aligned to +/- strand):  ref base . (0/2);  new base G (184/175);  total (184/178)
Fisher's exact test for biased strand distribution p-value = 2.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01

Only 100 of 403 total aligned reads displayed.

AACGGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑CGGACG‑‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGT  >  NC_000913/3544261‑3544440
                                                                                                |                                                                                         
aaCGGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGGGTc                                                                                            >  2:6178754/1‑96 (MQ=255)
aaCGGCTTCAACCCTCTCGTCCTCGTGGCCCTTGCTCTTGGATTAATGCAAGTAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTc                                                                                            <  1:12727701/96‑1 (MQ=255)
 aCGGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTcg                                                                                          <  1:7082895/96‑1 (MQ=255)
  cGGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTcgg                                                                                         >  1:5316484/1‑95 (MQ=255)
   cgCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTcggc                                                                                        <  2:5664302/95‑3 (MQ=255)
    gCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTcggcg                                                                                       <  2:7303200/96‑4 (MQ=255)
     cTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTcggccg                                                                                      <  1:13175808/96‑5 (MQ=255)
                   tCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGcc                                                                      >  1:6414264/1‑96 (MQ=255)
                   tCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGcc                                                                      <  2:11008892/96‑1 (MQ=255)
                    ccTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCt                                                                     <  1:3252996/96‑1 (MQ=255)
                    ccTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCt                                                                     <  2:4662697/96‑1 (MQ=255)
                     cTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCtt                                                                    <  1:12295956/96‑1 (MQ=255)
                     cTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCtt                                                                    >  1:12461378/1‑96 (MQ=255)
                     cTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCtt                                                                    <  1:1739864/96‑1 (MQ=255)
                     cTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCtt                                                                    <  1:5432439/96‑1 (MQ=255)
                      tCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTg                                                                   <  1:9905281/96‑1 (MQ=255)
                      tCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTg                                                                   <  1:5582876/96‑1 (MQ=255)
                       cGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGc                                                                  >  1:8492973/1‑96 (MQ=255)
                       cGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGc                                                                  <  2:7985317/96‑1 (MQ=255)
                        gTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGcc                                                                 <  1:5846282/96‑1 (MQ=255)
                        gTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGcc                                                                 <  1:2281616/96‑1 (MQ=255)
                         tGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCTGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGccc                                                                <  1:12187471/96‑1 (MQ=255)
                         tGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGccc                                                                >  2:3558267/1‑96 (MQ=255)
                         tGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGccc                                                                >  2:2023770/1‑96 (MQ=255)
                          ggCGCTTGCTCTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCt                                                               <  2:10729356/96‑1 (MQ=255)
                           gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTg                                                              <  2:3776203/96‑1 (MQ=255)
                           gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGGGGCGG‑‑CGGGACGCTCGGTAGCCTTGccccg                                                              >  2:9505353/1‑94 (MQ=255)
                           gagcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTg                                                              >  1:10573567/3‑96 (MQ=255)
                             gcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGAt                                                            >  2:2553920/1‑96 (MQ=255)
                             gcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGAt                                                            >  2:13384421/1‑96 (MQ=255)
                               ttGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCa                                                          >  1:9760592/1‑96 (MQ=255)
                               ttGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCa                                                          <  2:7019368/96‑1 (MQ=255)
                                tGCTGTTGGATTAATACAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCAt                                                         >  1:8162212/1‑96 (MQ=255)
                                 gCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCAtt                                                        >  1:10186256/1‑95 (MQ=255)
                                     ttGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtt                                                    <  1:6121168/96‑1 (MQ=255)
                                      tGGATTAATGCAAGGAATGCCGCTGGATAGAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGGCGCTCCGTAGCCTTGCCCTGCTCATGGGttt                                                   >  2:5252159/1‑96 (MQ=255)
                                       ggATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGGCGCTCGGTAGCCTTGCCCTGATCATGGGtttt                                                  >  2:12529367/1‑96 (MQ=255)
                                       ggATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGGCGCTCGGGAGCCTTGCCCTGATCATGGGtttt                                                  >  2:6407489/1‑96 (MQ=255)
                                        gATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTg                                                 <  1:11711303/96‑1 (MQ=255)
                                           tAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGTGAGCCTTGCCCTGATCATTGGTTTTGgcg                                              >  2:13742251/1‑96 (MQ=255)
                                            agtGCAAGGAATGCCGCTGGGTAAAGTTATTGGCTCCATCAAAACCGGGGTCGG‑‑CGGGGGGCTCCGTAGCCGTGCCCTGTTCCTGGGGTTTGgggc                                             >  1:7515184/3‑96 (MQ=255)
                                             aTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCa                                            >  2:9367048/1‑96 (MQ=255)
                                              tccAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCaa                                           >  1:11064607/3‑96 (MQ=255)
                                              tGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCaa                                           <  2:235181/96‑1 (MQ=255)
                                               gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCTG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAt                                          <  1:4076300/96‑1 (MQ=255)
                                               gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAt                                          <  1:5041098/96‑1 (MQ=255)
                                                cAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATg                                         <  1:8706031/96‑1 (MQ=255)
                                                 aaGGACTGCCGCTTGATAAAGTTATCGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGc                                        <  1:1349967/96‑1 (MQ=255)
                                                 aaGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGc                                        >  2:7474504/1‑96 (MQ=255)
                                                 aaGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGGTTTGGCGCAATGc                                        >  2:11468118/1‑96 (MQ=255)
                                                  aGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCt                                       <  2:980274/96‑1 (MQ=255)
                                                    gAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTgg                                     <  1:13792329/96‑1 (MQ=255)
                                                    gAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTgg                                     >  1:9153000/1‑96 (MQ=255)
                                                      aTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTgggt                                   <  1:11326284/96‑2 (MQ=255)
                                                      aTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGc                                   >  2:453133/1‑96 (MQ=255)
                                                      aTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGc                                   <  1:392021/96‑1 (MQ=255)
                                                      aTGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGc                                   <  2:13939700/96‑1 (MQ=255)
                                                        gCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGGCGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaa                                 >  1:8908916/1‑96 (MQ=255)
                                                         ccGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTGGGCGATATGCTGGGCaaa                                >  1:14272702/1‑96 (MQ=255)
                                                          cGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGGCTTGCCCTGGTCATGGGTTTTGGCGCAATGCTGGGCaaaa                               >  2:5482624/1‑96 (MQ=255)
                                                          cGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                               <  2:11888663/96‑1 (MQ=255)
                                                          cGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGAGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                               <  2:10104024/96‑1 (MQ=255)
                                                           gCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                              >  1:1580429/1‑96 (MQ=255)
                                                           gCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                              <  1:12910662/96‑1 (MQ=255)
                                                           gCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                              >  2:1316103/1‑96 (MQ=255)
                                                           gCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                              <  1:7201753/96‑1 (MQ=255)
                                                            cTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATg                             <  2:400897/96‑1 (MQ=255)
                                                             tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGTCCTGATCTTGGGTTTTTGCGCAATGCTGGGCACAATGc                            >  1:2647804/1‑96 (MQ=255)
                                                             tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGc                            >  2:582205/1‑96 (MQ=255)
                                                             tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGc                            >  2:10460078/1‑96 (MQ=255)
                                                             tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGc                            <  2:12427413/96‑1 (MQ=255)
                                                              ggATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCt                           <  1:13019358/96‑1 (MQ=255)
                                                               gATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                          <  2:8580791/96‑1 (MQ=255)
                                                                aTAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTgg                         >  1:7922512/1‑96 (MQ=255)
                                                                aTAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTgg                         >  2:8161227/1‑96 (MQ=255)
                                                                aTAAAGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTgg                         <  2:10244226/96‑1 (MQ=255)
                                                                  aaaGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                       >  1:5246138/1‑96 (MQ=255)
                                                                  aaaGTTATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGAGCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                       >  2:12246082/1‑96 (MQ=255)
                                                                      ttATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACt                   >  2:14219494/1‑96 (MQ=255)
                                                                      ttATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACt                   <  1:2526751/96‑1 (MQ=255)
                                                                      ttATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACt                   >  1:4701049/1‑96 (MQ=255)
                                                                       tATTGGCTCCCTCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTg                  <  1:4355312/96‑1 (MQ=255)
                                                                       tATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTg                  <  1:10050557/96‑1 (MQ=255)
                                                                       tATTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTg                  >  1:3752637/1‑96 (MQ=255)
                                                                        aTTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGc                 <  1:11966714/96‑1 (MQ=255)
                                                                        aTTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGc                 <  2:682639/96‑1 (MQ=255)
                                                                        aTTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGc                 <  2:3186326/96‑1 (MQ=255)
                                                                        aTTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGc                 <  1:304147/96‑1 (MQ=255)
                                                                        aTTGGCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGGTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGc                 >  2:12866985/1‑96 (MQ=255)
                                                                           ggCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt              <  1:2023770/96‑1 (MQ=255)
                                                                            gCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGGTCATGGGTTTTGGCGCAATGCTGGGGAAAATGCTGGCAGACTGCGGTg             >  2:9172531/1‑96 (MQ=255)
                                                                            gCTCCATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTg             <  1:6684923/96‑1 (MQ=255)
                                                                               cgaTCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg          >  1:10718722/3‑96 (MQ=255)
                                                                               ccATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg          >  1:276779/1‑96 (MQ=255)
                                                                                cATCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcgc         >  2:8802691/1‑96 (MQ=255)
                                                                                 aTCAAAGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGca        <  2:1883318/96‑1 (MQ=255)
                                                                                     aaGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAAc    <  1:4515224/96‑1 (MQ=255)
                                                                                      aGCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACg   >  2:4934978/1‑96 (MQ=255)
                                                                                       gCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGt  >  1:14126119/1‑96 (MQ=255)
                                                                                       gCCGGTGTCGG‑‑CGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGGGGCGCACAACGt  >  2:4198212/1‑96 (MQ=255)
                                                                                                |                                                                                         
AACGGCTTCATCGCTCTCGTCCTCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑CGGACG‑‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGT  >  NC_000913/3544261‑3544440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: