Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,316,203 T→A Q47L (CAG→CTG)  phnK ← ATP‑binding component of phosphonate transport

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,316,2030TA100.0% 1879.9 / NA 481Q47L (CAG→CTG) phnKATP‑binding component of phosphonate transport
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (252/229);  total (252/229)

Only 100 of 525 total aligned reads displayed.

CGGCGGTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCTGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGCCCGGC  >  NC_000913/4316110‑4316295
                                                                                             |                                                                                            
cggcggTCGGCCTCGCTCATTGCATACAGCGACCGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCagcagc                                                                                            <  1:5595938/96‑1 (MQ=255)
 ggcggTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCg                                                                                           <  2:12832523/96‑1 (MQ=255)
 ggcggTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCg                                                                                           >  2:7088087/1‑96 (MQ=255)
   cggTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTg                                                                                         <  1:6431415/96‑1 (MQ=255)
    ggTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTgg                                                                                        >  2:9215581/1‑96 (MQ=255)
    ggTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTgg                                                                                        >  2:13578053/1‑96 (MQ=255)
    ggTCGGCCTCGCTCATTGCATACAGCGAACGGGTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTgg                                                                                        >  2:3895060/1‑96 (MQ=255)
     gTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCTCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGt                                                                                       >  2:7798916/1‑96 (MQ=255)
     gTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGt                                                                                       <  2:6709268/96‑1 (MQ=255)
     gTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTGCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGt                                                                                       <  1:3895060/96‑1 (MQ=255)
      tCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTc                                                                                      >  2:4461449/1‑96 (MQ=255)
        tgCCTCGCTCATTGCATACAGCGAAAGTTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCtt                                                                                    <  1:1797372/95‑1 (MQ=255)
        ggCCTCGCTGATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCtt                                                                                    <  2:10970045/96‑1 (MQ=255)
          ccTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTcc                                                                                  >  1:4098972/1‑96 (MQ=255)
          ccTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTcc                                                                                  <  2:8889154/96‑1 (MQ=255)
          ccTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTGCCCCCTGCGGCGGCGTCAGGCGCGCGGAGATCGACTTCGGCAGCGCGGTCttgc                                                                                  >  1:221795/1‑94 (MQ=255)
            tCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCg                                                                                <  1:6182250/96‑1 (MQ=255)
             cGCTCAGTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCgg                                                                               <  1:14139397/96‑1 (MQ=255)
              gCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGa                                                                              >  2:13236985/1‑96 (MQ=255)
                  aTTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCg                                                                          >  1:2549786/1‑96 (MQ=255)
                  aTTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCg                                                                          >  2:10607669/1‑96 (MQ=255)
                      cATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGAtt                                                                      >  1:3351812/1‑96 (MQ=255)
                        tACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGGGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTcc                                                                    >  2:12747817/1‑96 (MQ=255)
                          cAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTcccc                                                                  <  1:14390186/96‑1 (MQ=255)
                           aGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCg                                                                 <  2:2656104/96‑1 (MQ=255)
                           aGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCg                                                                 >  1:9291377/1‑96 (MQ=255)
                             cGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGAc                                                               <  1:13227387/96‑1 (MQ=255)
                             cGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGAc                                                               >  1:9896008/1‑96 (MQ=255)
                             cGAACGGTTCTCGTAGTGAATTTACCCCTGATGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCgtc                                                               <  1:10295163/96‑3 (MQ=255)
                                aCGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAAt                                                            >  1:2721461/1‑96 (MQ=255)
                                   gTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGCAGCCGGATTCCCCGACAATGcc                                                         >  2:1020144/1‑96 (MQ=255)
                                      ctcGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAg                                                      >  2:3477541/1‑96 (MQ=255)
                                      cgcGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGAGAATGCCCAg                                                      >  1:10622022/3‑96 (MQ=255)
                                        cGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGTCCAGCa                                                    <  2:11221977/96‑1 (MQ=255)
                                        cGTAGTGAATTTCCCCCTCCTGCGGCGTCAGGCGCGCGGCGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCa                                                    >  1:10145566/1‑96 (MQ=255)
                                         gTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCAc                                                   <  2:12658202/96‑1 (MQ=255)
                                          tAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACt                                                  >  2:6182760/1‑96 (MQ=255)
                                           aGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACGATGCCCAGCACtc                                                 <  1:11427124/96‑2 (MQ=255)
                                           aGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACtt                                                 >  1:7703208/1‑96 (MQ=255)
                                           aGTGAATTTCCCCCTGCCGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACtt                                                 <  2:114653/96‑1 (MQ=255)
                                            gTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTc                                                <  2:872676/96‑1 (MQ=255)
                                            gTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTc                                                <  1:9686299/96‑1 (MQ=255)
                                            gTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTc                                                >  2:8367019/1‑96 (MQ=255)
                                               aaTTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTcccc                                             <  1:2935472/96‑1 (MQ=255)
                                                aTTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTccccc                                            <  2:1852041/96‑1 (MQ=255)
                                                aTTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTccccc                                            <  1:4713373/96‑1 (MQ=255)
                                                  ttCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTccccccg                                          <  1:11681151/96‑3 (MQ=255)
                                                  ttCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCgg                                          >  2:12354845/1‑96 (MQ=255)
                                                    cccccTGCTGCGGCGTCAGGCGCGCGGAGCTCAACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGcc                                        <  1:11164371/96‑1 (MQ=255)
                                                     ccccTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCGCGACAATGCCCAGCACTTCCCCCGGCCa                                       >  1:12251235/1‑96 (MQ=255)
                                                     ccccTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGAGGTCTTCCCGGAGCCGGCTTCCATGACAATGCCCAGCACATCCCCCGGcaa                                       >  1:5074345/1‑94 (MQ=255)
                                                      cccTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCAt                                      <  2:5761575/96‑1 (MQ=255)
                                                       ccTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATa                                     >  2:2832699/1‑96 (MQ=255)
                                                          gctgcGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAAt                                  >  2:10451991/1‑96 (MQ=255)
                                                          gctgcGGCGGCAGGGCCGCGGAGATCGGCTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAAt                                  <  2:12235747/96‑1 (MQ=255)
                                                           ctgcGGCGTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATc                                 >  1:4787170/1‑96 (MQ=255)
                                                             gcggcgTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCaa                               <  1:13580797/96‑1 (MQ=255)
                                                              cggcgTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCaaa                              >  2:3764760/1‑96 (MQ=255)
                                                                  gTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAagag                          <  2:9414672/96‑1 (MQ=255)
                                                                  gTCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAagag                          >  2:7641905/1‑96 (MQ=255)
                                                                   tCAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAgaga                         <  2:3351812/96‑1 (MQ=255)
                                                                    cAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGAc                        >  1:1346916/1‑96 (MQ=255)
                                                                    cAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGAc                        >  2:2041941/1‑96 (MQ=255)
                                                                    cAGGCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGAc                        >  1:7996532/1‑96 (MQ=255)
                                                                      ggCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACAt                      >  2:13936524/1‑96 (MQ=255)
                                                                      ggCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACAt                      <  2:3285887/96‑1 (MQ=255)
                                                                      ggCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACAt                      >  1:8332310/1‑96 (MQ=255)
                                                                      ggCGCGCGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACAt                      <  2:8084372/96‑1 (MQ=255)
                                                                       gcgcgcGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATc                     <  1:8619115/96‑1 (MQ=255)
                                                                       gcgcgcGGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATc                     <  2:3152423/96‑1 (MQ=255)
                                                                        cgcgggGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCg                    <  2:6489207/96‑1 (MQ=255)
                                                                         gcgcgGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGc                   <  1:877069/96‑1 (MQ=255)
                                                                         gcgcgGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGc                   <  2:11611425/96‑1 (MQ=255)
                                                                          cgcgGAGATCGCCTTCAGCAGCGTGGTCTTCCCGGAGACGGATTCCCCGACAATGCCCAGCCCTTCCCCCGGCCATAAATCAAAAGAGACATCGCt                  <  1:6608025/96‑1 (MQ=255)
                                                                          cgcgGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCt                  >  1:3094036/1‑96 (MQ=255)
                                                                           gcgGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTa                 <  2:6862174/96‑1 (MQ=255)
                                                                           gcgGAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTa                 >  1:9158292/1‑96 (MQ=255)
                                                                            cgGAGATCGACTTCAGCAGCGTGGGCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTaa                >  2:14359365/1‑96 (MQ=255)
                                                                             ggAGATCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTaaa               >  2:14201573/1‑96 (MQ=255)
                                                                             ggAGACCGACTTCAGCAGCGTGGCCTTCCCGGAGCCGGATCCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTaaa               <  2:4778968/96‑1 (MQ=255)
                                                                              gagaTCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAg              <  1:10021490/96‑1 (MQ=255)
                                                                              gagaTCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAg              >  2:4087520/1‑96 (MQ=255)
                                                                               agaTCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGc             >  1:7030700/1‑96 (MQ=255)
                                                                               agaTCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGc             <  2:4175718/96‑1 (MQ=255)
                                                                                gaTCGACATCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGcc            <  1:5306676/96‑1 (MQ=255)
                                                                                 agcGACTTCAGGAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCt           >  1:11059601/3‑96 (MQ=255)
                                                                                 aTCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCt           >  1:3555530/1‑96 (MQ=255)
                                                                                  tCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCtt          >  1:7468873/1‑96 (MQ=255)
                                                                                  tCGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCtt          <  1:12747817/96‑1 (MQ=255)
                                                                                   cGACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCttt         <  1:13728688/96‑1 (MQ=255)
                                                                                    gACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTg        >  1:1245742/1‑96 (MQ=255)
                                                                                    gACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTg        <  2:3668350/96‑1 (MQ=255)
                                                                                    gACTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTg        >  2:13503602/1‑96 (MQ=255)
                                                                                     aCTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGc       >  2:2571398/1‑96 (MQ=255)
                                                                                      cTTCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGcc      <  1:1382267/96‑1 (MQ=255)
                                                                                       ttCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGccc     >  1:7224481/1‑96 (MQ=255)
                                                                                       ttCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGccc     >  2:5040693/1‑96 (MQ=255)
                                                                                        tCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGCCCg    <  2:163025/96‑1 (MQ=255)
                                                                                        tCAGCAGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGCCCg    <  2:5310868/96‑1 (MQ=255)
                                                                                         cagcagCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGCCCgg   >  2:1137584/1‑96 (MQ=255)
                                                                                             |                                                                                            
CGGCGGTCGGCCTCGCTCATTGCATACAGCGAACGGTTCTCGTAGTGAATTTCCCCCTGCTGCGGCGTCAGGCGCGCGGAGATCGACTTCAGCTGCGTGGTCTTCCCGGAGCCGGATTCCCCGACAATGCCCAGCACTTCCCCCGGCCATAAATCAAAAGAGACATCGCTAAAGCCTTTGCCCGGC  >  NC_000913/4316110‑4316295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: