Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,185,807 T→C F131S (TTT→TCT)  yqiG → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,185,8070TC99.5% 2284.1 / NA 563F131S (TTT→TCT) yqiGputative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (306/254);  minor base A (3/0);  total (309/254)
Fisher's exact test for biased strand distribution p-value = 2.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 569 total aligned reads displayed.

CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATTTCGATAAAGGGAAAATGCAATTATCCATATTTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCTTGACTACA  >  NC_000913/3185714‑3185899
                                                                                             |                                                                                            
cgcAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTTTCCTTATCTg                                                                                            >  1:11035880/3‑96 (MQ=255)
  cAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCa                                                                                          <  2:11143756/96‑1 (MQ=255)
   aGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCAc                                                                                         <  1:10040892/96‑1 (MQ=255)
    gCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCaac                                                                                        <  1:10809318/96‑3 (MQ=255)
    gCAAAACCTGATCGATGGTTGTTACCCTATAGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCaac                                                                                        <  1:12750031/96‑3 (MQ=255)
     cAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCt                                                                                       >  2:5943399/1‑96 (MQ=255)
      aaaaCCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTc                                                                                      <  1:14400947/96‑1 (MQ=255)
      aaaaCCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTc                                                                                      <  2:5572464/96‑1 (MQ=255)
      aaaaCCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTc                                                                                      <  1:1218301/96‑1 (MQ=255)
       aaaCCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCa                                                                                     <  2:6421778/96‑1 (MQ=255)
        aaCCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAg                                                                                    >  2:3103097/1‑96 (MQ=255)
        aaCCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAg                                                                                    <  1:7267944/96‑1 (MQ=255)
          ccTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGc                                                                                  <  1:3715646/96‑1 (MQ=255)
           cTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCa                                                                                 >  1:2617043/1‑96 (MQ=255)
            tGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCAt                                                                                >  1:6579637/1‑96 (MQ=255)
             gATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATg                                                                               >  1:13159927/1‑96 (MQ=255)
              aTCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATgg                                                                              >  2:3490884/1‑96 (MQ=255)
                cGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATgggt                                                                            <  1:7528879/96‑3 (MQ=255)
                cGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGtt                                                                            >  2:14140135/1‑96 (MQ=255)
                cGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGtt                                                                            <  2:8640871/96‑1 (MQ=255)
                 gATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTa                                                                           >  1:7842742/1‑96 (MQ=255)
                 gATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTa                                                                           >  1:192272/1‑96 (MQ=255)
                 gATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTa                                                                           >  2:13232956/1‑96 (MQ=255)
                   tGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTaaa                                                                         <  2:6156500/96‑1 (MQ=255)
                      ttgttACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATa                                                                      >  2:9142960/1‑96 (MQ=255)
                         ttACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACaa                                                                   <  1:2930771/96‑1 (MQ=255)
                         ttACCCTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACaa                                                                   >  2:388903/1‑96 (MQ=255)
                         tgaCCCTATCGAAAGAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCACAGGCATGGTTAAAATACaa                                                                   >  1:9354482/3‑96 (MQ=255)
                              cTATCGAAAAAGAAAGACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATg                                                              >  2:13025827/1‑96 (MQ=255)
                              cTATCGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCGATATCTGCACCTCAGGCATGGTTAAAATACAAAGATg                                                              >  2:12216624/1‑96 (MQ=255)
                                 tCGAAAAAGAAAAACAAATTACAACTTATCTCGATACAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCaa                                                           <  2:4979663/96‑1 (MQ=255)
                                  cGAAAAAGAAAAACAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCaaa                                                          >  1:6170775/1‑96 (MQ=255)
                                   gaaaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCaaag                                                         <  1:13805407/96‑2 (MQ=255)
                                   gaaaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAAc                                                         >  2:11433330/1‑96 (MQ=255)
                                   gaaaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAAc                                                         >  1:6920667/1‑96 (MQ=255)
                                    aaaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACt                                                        >  2:7817086/1‑96 (MQ=255)
                                     aaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTg                                                       >  1:13470099/1‑96 (MQ=255)
                                     aaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTg                                                       >  2:73466/1‑96 (MQ=255)
                                     aaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTg                                                       >  1:3505887/1‑96 (MQ=255)
                                     aaaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTg                                                       >  2:1512214/1‑96 (MQ=255)
                                      aaagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTgg                                                      >  2:9591468/1‑96 (MQ=255)
                                       aggaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGa                                                     >  1:10545934/3‑96 (MQ=255)
                                       aagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGa                                                     >  1:2414939/1‑96 (MQ=255)
                                       aagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGa                                                     <  2:870587/96‑1 (MQ=255)
                                       aagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGa                                                     >  2:10358369/1‑96 (MQ=255)
                                       aagaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGa                                                     >  1:516146/1‑96 (MQ=255)
                                         gaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACg                                                   >  2:11717474/1‑96 (MQ=255)
                                         gaaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACg                                                   <  2:10201832/96‑1 (MQ=255)
                                          aaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGc                                                  >  1:8092405/1‑96 (MQ=255)
                                          aaaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGc                                                  >  1:8902558/1‑96 (MQ=255)
                                           aaaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGcc                                                 >  2:9688657/1‑96 (MQ=255)
                                            aaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGcct                                                <  1:8660580/96‑1 (MQ=255)
                                            aaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGcct                                                <  2:1982008/96‑1 (MQ=255)
                                            aaaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGcct                                                >  2:5834916/1‑96 (MQ=255)
                                             aaCAAATTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGcctc                                               >  1:8485872/1‑96 (MQ=255)
                                                aaaTTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGcctcctc                                            >  2:2924249/1‑95 (MQ=255)
                                                aaaTTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTg                                            <  1:4748131/96‑1 (MQ=255)
                                                 aaTTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGa                                           >  1:4991413/1‑96 (MQ=255)
                                                  aTTACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGaa                                          >  1:12378165/1‑96 (MQ=255)
                                                    tACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACt                                        >  2:3301152/1‑96 (MQ=255)
                                                        aCTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTgg                                    >  2:4117802/1‑96 (MQ=255)
                                                         cTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGa                                   <  2:6927641/96‑1 (MQ=255)
                                                          ttATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGGCTCCTGAACTTTGGaa                                  <  1:1595826/96‑1 (MQ=255)
                                                           tATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAAt                                 <  1:5697819/96‑1 (MQ=255)
                                                            atctCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATc                                >  2:4595779/4‑96 (MQ=255)
                                                            atctCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATc                                <  1:9928504/93‑1 (MQ=255)
                                                             tctCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCa                               <  2:13631679/94‑1 (MQ=255)
                                                               tagATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGCAATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATg                             >  1:2231872/3‑96 (MQ=255)
                                                                cGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATgg                            <  1:7101054/96‑1 (MQ=255)
                                                                cGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATgg                            <  2:5107397/96‑1 (MQ=255)
                                                                 gATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGt                           >  2:2239522/1‑96 (MQ=255)
                                                                  aTAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTa                          >  2:8861311/1‑96 (MQ=255)
                                                                   tAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTAt                         <  1:11796217/96‑1 (MQ=255)
                                                                   tAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTAt                         >  2:4803415/1‑96 (MQ=255)
                                                                    aaaGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTa                          >  2:10878920/1‑94 (MQ=255)
                                                                    aaaGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTAtt                        >  2:1785949/1‑96 (MQ=255)
                                                                    aaaGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTAtt                        >  1:11170240/1‑96 (MQ=255)
                                                                    aaaGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTAtt                        <  1:9745585/96‑1 (MQ=255)
                                                                    aaaGGGAAAATGCAATTATCCATATCAGCACCTCAGGCATGGTTAAACTACAAAGATGCAAACTGGACGCCTCATGAACTTTGGAATCATGGTAtt                        <  1:9247750/96‑1 (MQ=255)
                                                                     aaGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTg                       <  2:6714426/96‑1 (MQ=255)
                                                                      aGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGc                      >  2:4364786/1‑96 (MQ=255)
                                                                       gggAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCt                     <  1:9619041/96‑1 (MQ=255)
                                                                        gaaaaaTGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGGACTTTGGAATCATGGTATTGCTg                    >  1:10287728/3‑96 (MQ=255)
                                                                         gAAAGTGCAATTATCCATATCTGCACCTCAGGCATGGTTGAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTgg                   >  1:10144881/1‑96 (MQ=255)
                                                                          aaaaTGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTggg                  <  2:12548915/96‑1 (MQ=255)
                                                                           aaaTGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTgggg                 <  1:7434688/96‑1 (MQ=255)
                                                                            aaTGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTggggg                <  1:11433330/96‑2 (MQ=255)
                                                                            aaTGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGc                >  2:5296807/1‑96 (MQ=255)
                                                                             aTGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCa               >  1:9115055/1‑96 (MQ=255)
                                                                              tGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCAt              <  2:10682034/96‑1 (MQ=255)
                                                                               gCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCAtt             <  1:4364786/96‑1 (MQ=255)
                                                                                 aaTTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTc           >  1:3115535/1‑96 (MQ=255)
                                                                                 aaTTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTc           >  2:13882795/1‑96 (MQ=255)
                                                                                  aTTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCt          >  1:5332071/1‑96 (MQ=255)
                                                                                  aTTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCt          <  1:13706586/96‑1 (MQ=255)
                                                                                   ttATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCtt         >  1:5868755/1‑96 (MQ=255)
                                                                                   ttATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCtt         <  2:7465757/96‑1 (MQ=255)
                                                                                    tATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCTTg        <  2:8377619/96‑1 (MQ=255)
                                                                                    tATCCATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCTTg        <  2:9340921/96‑1 (MQ=255)
                                                                                        cATATCTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCTTGACTa    >  2:11898029/1‑96 (MQ=255)
                                                                                             |                                                                                            
CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATTTCGATAAAGGGAAAATGCAATTATCCATATTTGCACCTCAGGCATGGTTAAAATACAAAGATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCTTGACTACA  >  NC_000913/3185714‑3185899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: