Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,578,561 (A)9→8 intergenic (‑125/‑208) yhhX ← / → yhhY putative regulator/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,578,5530A.85.0% 818.9 / 169.9 247intergenic (‑117/‑216)yhhX/yhhYputative regulator/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (18/19);  new base . (102/108);  total (120/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01

Only 100 of 285 total aligned reads displayed.

TTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATC  >  NC_000913/3578462‑3578645
                                                                                           |                                                                                            
 ttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGGACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaa                                                                                            <  2:3560714/93‑1 (MQ=255)
 ttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaa                                                                                            >  2:4675985/1‑93 (MQ=255)
  tACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaa                                                                                           <  1:1081834/93‑1 (MQ=255)
   acacCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACTAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaa                                                                                          <  2:4789162/93‑1 (MQ=255)
       cTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaag                                                                                      <  1:2502019/93‑2 (MQ=255)
       cTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaag                                                                                      >  1:4302714/1‑92 (MQ=255)
       cTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaag                                                                                      >  2:2635016/1‑92 (MQ=255)
       cTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaag                                                                                      <  2:1922270/93‑2 (MQ=255)
        ttAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagc                                                                                     <  2:1065193/93‑3 (MQ=255)
        ttAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagc                                                                                     <  2:2915110/93‑3 (MQ=255)
         tAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagcc                                                                                    <  1:870490/93‑4 (MQ=255)
          aGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagcca                                                                                   >  1:3646435/1‑89 (MQ=255)
          aGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagcca                                                                                   <  1:6545009/93‑5 (MQ=255)
           gcgcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAg                                                                                 <  2:5485865/93‑1 (MQ=255)
            cgcAAAGCGCACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGc                                                                                <  1:2232668/93‑1 (MQ=255)
             gcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAATGAAAGATCAAAAAAAAGCCAGCa                                                                               >  1:4197774/1‑93 (MQ=255)
             gcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCa                                                                               <  1:1959527/93‑1 (MQ=255)
                aaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCAccc                                                                            <  1:1599283/93‑1 (MQ=255)
                aaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCAccc                                                                            <  2:2299369/93‑1 (MQ=255)
                aaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCAccc                                                                            >  2:749551/1‑93 (MQ=255)
                aaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCAccc                                                                            >  2:3355357/1‑93 (MQ=255)
                aaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCAccc                                                                            <  1:1241350/93‑1 (MQ=255)
                 aGCGGACGTGTTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCAccc                                                                            <  2:963680/93‑1 (MQ=255)
                 aGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCg                                                                           >  1:2888499/1‑93 (MQ=255)
                 aGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCg                                                                           <  2:4066158/93‑1 (MQ=255)
                 aGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCg                                                                           >  2:5349452/1‑93 (MQ=255)
                    ggACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCggct                                                                        >  1:444403/1‑93 (MQ=255)
                        gTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCggctggct                                                                    <  1:3438939/93‑1 (MQ=255)
                        gTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCggctggct                                                                    >  2:5912697/1‑93 (MQ=255)
                          ggTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTaa                                                                  >  1:4587773/1‑93 (MQ=255)
                          ggTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTaa                                                                  <  2:6093342/93‑1 (MQ=255)
                           gTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAg                                                                 <  2:4430959/93‑1 (MQ=255)
                            ttCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGt                                                                <  1:5867990/93‑1 (MQ=255)
                               cTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAAt                                                             >  1:1494678/1‑93 (MQ=255)
                                 aCTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATAc                                                           >  1:514002/1‑93 (MQ=255)
                                 aCTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATAc                                                           <  1:6287073/93‑1 (MQ=255)
                                 aCTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGACAGCACCCGGCTGGCTAAGTAATAc                                                           >  2:2274950/1‑93 (MQ=255)
                                  cTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACt                                                          <  1:318789/93‑1 (MQ=255)
                                     gAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGa                                                       <  2:244076/93‑1 (MQ=255)
                                       gTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAg                                                     <  2:1038481/93‑1 (MQ=255)
                                          cgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCaa                                                  <  1:3032337/93‑1 (MQ=255)
                                            cATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAAt                                                 >  1:1158583/1‑93 (MQ=255)
                                            cATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAAtg                                                >  2:420311/1‑93 (MQ=255)
                                             aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAAtg                                                <  1:5544416/93‑1 (MQ=255)
                                             aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAAtgt                                               >  2:5682791/1‑93 (MQ=255)
                                              tAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAAtgt                                               <  2:857222/93‑1 (MQ=255)
                                              tAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAAtgtg                                              >  2:6014100/1‑93 (MQ=255)
                                               aaCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGa                                             <  2:3824895/93‑1 (MQ=255)
                                               aaCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGa                                             <  2:6241690/93‑1 (MQ=255)
                                                aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAg                                            >  1:2357054/1‑93 (MQ=255)
                                                  gAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCa                                          >  2:2992848/1‑93 (MQ=255)
                                                   aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCaa                                         >  2:5860102/1‑93 (MQ=255)
                                                   aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCaa                                         >  1:464132/1‑93 (MQ=255)
                                                   aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCaa                                         >  1:6890/1‑93 (MQ=255)
                                                    acacAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAAt                                        >  2:4965795/1‑93 (MQ=255)
                                                      acaAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGt                                      >  1:1827059/1‑93 (MQ=255)
                                                        aaGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCg                                    >  2:1441707/1‑93 (MQ=255)
                                                         aGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGt                                   >  2:4083366/1‑93 (MQ=255)
                                                          gCACTCTTGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTg                                  <  1:1289774/93‑1 (MQ=255)
                                                          gCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTg                                  >  2:1836070/1‑93 (MQ=255)
                                                          gCACTCACGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTg                                  <  2:135854/93‑1 (MQ=255)
                                                           cACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTg                                  <  1:2717238/93‑1 (MQ=255)
                                                            aCTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGc                                 <  1:2166336/93‑1 (MQ=255)
                                                            aCTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCt                                >  1:6136610/1‑93 (MQ=255)
                                                             cTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCtt                               >  1:3324811/1‑93 (MQ=255)
                                                                 cGTGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAg                           <  2:6634314/93‑1 (MQ=255)
                                                                   tGGATAAATTGAGAACGAAAGATCAAAAAAAATCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt                         <  2:2530194/93‑1 (MQ=255)
                                                                   tGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt                         <  2:1240036/93‑1 (MQ=255)
                                                                   tGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt                         >  1:5267262/1‑93 (MQ=255)
                                                                   tGGATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt                         >  2:6466633/1‑93 (MQ=255)
                                                                    ggATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt                         >  1:5664300/1‑93 (MQ=255)
                                                                    ggATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGtt                        >  2:4152748/1‑93 (MQ=255)
                                                                     gATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGttt                       >  1:4367359/1‑92 (MQ=255)
                                                                     gATAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtc                       <  2:4302714/93‑1 (MQ=255)
                                                                       tAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtct                      >  2:3591500/1‑93 (MQ=255)
                                                                       tAAATTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtctc                     <  1:1769087/93‑1 (MQ=255)
                                                                        aaaTTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtctc                     >  2:2378092/1‑93 (MQ=255)
                                                                        aaaTTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTcc                    <  1:1685367/93‑1 (MQ=255)
                                                                         aaTTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCcg                   >  2:1710864/1‑93 (MQ=255)
                                                                          aTTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCcgc                  <  2:5806096/93‑1 (MQ=255)
                                                                          aTTGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCcgc                  >  1:4015303/1‑93 (MQ=255)
                                                                           ttGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCcgcg                 >  1:3115529/1‑93 (MQ=255)
                                                                            tGAGAACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGa                >  2:2746873/1‑93 (MQ=255)
                                                                             gagaACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGa                >  2:209054/1‑93 (MQ=255)
                                                                             gagaACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAg               <  1:4495250/93‑1 (MQ=255)
                                                                             gagaACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAg               >  1:4814208/1‑93 (MQ=255)
                                                                               gaACGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAggg             <  1:3765828/93‑1 (MQ=255)
                                                                                aaCGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGt            <  1:5739179/93‑1 (MQ=255)
                                                                                 aCGAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTc           <  2:5643004/93‑1 (MQ=255)
                                                                                  agAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATCCTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCt          <  2:3211849/92‑1 (MQ=255)
                                                                                   gAAAGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCtt         <  2:4767427/93‑1 (MQ=255)
                                                                                    aaaGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCtt         <  1:6504915/93‑1 (MQ=255)
                                                                                    aaaGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTc        <  2:3484019/93‑1 (MQ=255)
                                                                                     aaGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTc        <  1:5114357/93‑1 (MQ=255)
                                                                                     aaGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc       <  2:2183876/93‑1 (MQ=255)
                                                                                     aaGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc       <  2:6266700/93‑1 (MQ=255)
                                                                                     aaGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc       <  2:3290370/93‑1 (MQ=255)
                                                                                     aaGATCAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc       >  2:3083152/1‑93 (MQ=255)
                                                                                       gATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCt      >  2:5548451/1‑93 (MQ=255)
                                                                                           aaaaaaaaaGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATc  >  1:2461111/1‑93 (MQ=255)
                                                                                           |                                                                                            
TTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATC  >  NC_000913/3578462‑3578645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: