Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,554,118 +C coding (367/396 nt) yhgKJ ← RNA phosphage cyclase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,554,1171.C99.2% 869.0 / ‑1.2 244coding (368/396 nt)yhgKJRNA phosphage cyclase
Reads supporting (aligned to +/- strand):  ref base . (2/0);  new base C (134/108);  total (136/108)
Fisher's exact test for biased strand distribution p-value = 5.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 272 total aligned reads displayed.

TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGAGGCGGCGCCGACGGGTTATCGGTCGCCGCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC  >  NC_000913/3554026‑3554199
                                                                                             |                                                                                  
 ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgccgcc                                                                                  >  2:5084475/1‑92 (MQ=255)
 ggTTTACTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgccgcc                                                                                  >  2:3449147/1‑92 (MQ=255)
  gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgccgccg                                                                                 >  2:3748491/1‑91 (MQ=255)
  gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgccgccg                                                                                 <  1:1955084/93‑3 (MQ=255)
  gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgccgccg                                                                                 >  1:3231741/1‑91 (MQ=255)
  gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCAACCGGCGGATAAAATCCGCAGGAGGCGCCGACGGGTTATCGGtgccgccg                                                                                 >  1:4095223/1‑91 (MQ=255)
   tttGCTGATGAATTCCTATTTTCGCGAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGtgccgccgc                                                                                <  2:5147453/93‑4 (MQ=255)
        tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACt                                                                            >  2:2131501/1‑93 (MQ=255)
        tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACt                                                                            >  1:3967753/1‑93 (MQ=255)
        tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACt                                                                            >  1:2602583/1‑93 (MQ=255)
        tgatgaATTCCTATTTACGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACt                                                                            <  2:4144620/93‑1 (MQ=255)
         gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCGCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACtt                                                                           <  1:1458225/93‑1 (MQ=255)
         gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACtt                                                                           >  1:5623557/1‑93 (MQ=255)
           tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCa                                                                         >  2:5656864/1‑93 (MQ=255)
             aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAac                                                                       >  1:5914257/1‑93 (MQ=255)
             aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAac                                                                       <  2:2690306/93‑1 (MQ=255)
             aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAac                                                                       <  2:4098722/93‑1 (MQ=255)
             aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAac                                                                       >  1:2760584/1‑93 (MQ=255)
                tCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcg                                                                    >  2:3077130/1‑93 (MQ=255)
                tCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcg                                                                    <  1:90467/93‑1 (MQ=255)
                 ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcgc                                                                   >  1:4608866/1‑93 (MQ=255)
                 ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcgc                                                                   >  2:660606/1‑93 (MQ=255)
                 ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcgc                                                                   >  1:6530257/1‑93 (MQ=255)
                  cTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcgcg                                                                  >  1:3155710/1‑93 (MQ=255)
                  cTATTCTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACAcgcg                                                                  >  1:4205800/1‑93 (MQ=255)
                    aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGaa                                                                >  2:3992363/1‑93 (MQ=255)
                    aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGaa                                                                >  1:3505749/1‑93 (MQ=255)
                    aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGaa                                                                <  1:4567162/93‑1 (MQ=255)
                    aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGaa                                                                >  2:5723568/1‑93 (MQ=255)
                    aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGaa                                                                <  2:2032867/93‑1 (MQ=255)
                     ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAg                                                               >  2:5403403/1‑93 (MQ=255)
                     ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAg                                                               <  1:1706998/93‑1 (MQ=255)
                       ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGt                                                             >  1:1128524/1‑93 (MQ=255)
                         cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTcc                                                           >  1:2450074/1‑93 (MQ=255)
                         cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTcc                                                           <  2:79462/93‑1 (MQ=255)
                          gCCAGCAGCGGCTCCAGCACCGGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCa                                                          <  1:1271283/93‑1 (MQ=255)
                           ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCAt                                                         <  2:4687997/93‑1 (MQ=255)
                           ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCAt                                                         <  2:499803/93‑1 (MQ=255)
                           ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCAt                                                         >  1:2057490/1‑93 (MQ=255)
                           ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCAt                                                         >  2:6541795/1‑93 (MQ=255)
                            cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGGCGCCGCTCACTTCAACACGCGGAGGTCCATc                                                        >  1:4862502/1‑93 (MQ=255)
                            cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATc                                                        <  2:4576998/93‑1 (MQ=255)
                            cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATc                                                        >  2:6059509/1‑93 (MQ=255)
                             agcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCg                                                       >  1:835861/1‑93 (MQ=255)
                             agcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCg                                                       <  1:381166/93‑1 (MQ=255)
                              gcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg                                                      <  1:1006201/93‑1 (MQ=255)
                                  cGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaaa                                                  >  2:2288482/1‑93 (MQ=255)
                                  cGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaaa                                                  <  1:816512/93‑1 (MQ=255)
                                  cGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaaa                                                  >  1:5261108/1‑93 (MQ=255)
                                    gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc                                                <  2:1060842/93‑1 (MQ=255)
                                    gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc                                                <  1:3432343/93‑1 (MQ=255)
                                      tCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac                                              >  2:924141/1‑93 (MQ=255)
                                       ccAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca                                             >  2:1863817/1‑93 (MQ=255)
                                        cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg                                            >  1:4164515/1‑93 (MQ=255)
                                        cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg                                            <  1:6217716/93‑1 (MQ=255)
                                         aGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc                                           <  1:5594179/93‑1 (MQ=255)
                                          gCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcg                                          >  2:2585295/1‑93 (MQ=255)
                                            aCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg                                        <  2:5569802/93‑1 (MQ=255)
                                            aCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg                                        <  1:3117208/93‑1 (MQ=255)
                                             cccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg                                       >  1:975460/1‑93 (MQ=255)
                                             cccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg                                       <  1:3066613/93‑1 (MQ=255)
                                              ccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg                                      <  2:495/93‑1 (MQ=255)
                                              ccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg                                      <  1:2819642/93‑1 (MQ=255)
                                               cggcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc                                     >  1:1560500/1‑93 (MQ=255)
                                                 gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag                                   <  2:273705/93‑1 (MQ=255)
                                                   ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca                                 <  2:627121/93‑1 (MQ=255)
                                                   ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca                                 >  2:1632633/1‑93 (MQ=255)
                                                   ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca                                 >  1:3779258/1‑93 (MQ=255)
                                                   ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGCCCATCGGCAAACCACAGCGCGGgcagga                                 >  1:784414/1‑91 (MQ=255)
                                                    gATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc                                >  1:2566617/1‑93 (MQ=255)
                                                     aTAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAcc                               <  2:1416879/93‑1 (MQ=255)
                                                       aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt                             >  2:615923/1‑93 (MQ=255)
                                                       aaaaTCCGCAGGCGGCGCCGACGGGGTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt                             >  2:6435713/1‑93 (MQ=255)
                                                              gcaGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagc                      >  2:3530390/3‑93 (MQ=255)
                                                               caGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagca                     >  1:2911630/2‑93 (MQ=255)
                                                               caGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagca                     >  1:2103296/2‑93 (MQ=255)
                                                                aGGCGGCGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc                    >  2:3611133/1‑93 (MQ=255)
                                                                 ggcggcGCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc                   >  2:3006183/1‑93 (MQ=255)
                                                                  gcggcgCCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa                  <  2:2896413/93‑1 (MQ=255)
                                                                     gcgcCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCg               >  2:3264519/1‑93 (MQ=255)
                                                                     gcgcCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGACCATCGGCAAACCACAGCGCCGGCAGCACCGTTTGCAGCACCAGCg               >  1:3297985/1‑93 (MQ=255)
                                                                      cgcCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGt              <  1:3647739/93‑1 (MQ=255)
                                                                      cgcCGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGt              <  1:5094440/93‑1 (MQ=255)
                                                                        ccGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc            >  2:3833031/1‑93 (MQ=255)
                                                                         cGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa           >  1:4751417/1‑93 (MQ=255)
                                                                         cGACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa           <  1:6391644/93‑1 (MQ=255)
                                                                          gACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa          >  2:3923928/1‑93 (MQ=255)
                                                                          gACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa          >  1:1251409/1‑93 (MQ=255)
                                                                          gACGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTCTGCAGCACCAGCGTACaa          >  2:1301160/1‑93 (MQ=255)
                                                                           aCGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc         <  1:1670580/93‑1 (MQ=255)
                                                                            cGGGTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACt        >  2:2494646/1‑93 (MQ=255)
                                                                            cGGGTGATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACt        <  1:6092748/93‑1 (MQ=255)
                                                                             gggTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACtt       >  1:5233645/1‑93 (MQ=255)
                                                                             gggTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACtt       <  1:1194300/93‑1 (MQ=255)
                                                                              ggTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc      >  2:5246263/1‑93 (MQ=255)
                                                                               gTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc     <  1:2235292/93‑1 (MQ=255)
                                                                               gTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc     <  2:5885137/93‑1 (MQ=255)
                                                                               gTTATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc     <  1:4392740/93‑1 (MQ=255)
                                                                                ttATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCg    >  1:2690979/1‑93 (MQ=255)
                                                                                 tATCGGTGCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg   <  1:5704678/93‑1 (MQ=255)
                                                                                             |                                                                                  
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGAGGCGGCGCCGACGGGTTATCGGTCGCCGCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC  >  NC_000913/3554026‑3554199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: