Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,529,193 T→C V195A (GTA→GCA)  b1458 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,529,1930TC88.0% 589.1 / 62.6 209V195A (GTA→GCA) b1458hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (10/15);  new base C (98/86);  total (108/101)
Fisher's exact test for biased strand distribution p-value = 2.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01

Only 100 of 214 total aligned reads displayed.

AAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTA  >  NC_000913/1529101‑1529282
                                                                                            |                                                                                         
aaaGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGt                                                                                           >  1:653954/1‑93 (MQ=255)
aaaGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGt                                                                                           >  1:4968194/1‑93 (MQ=255)
     aaaaTTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAg                                                                                      >  1:3703186/1‑93 (MQ=255)
       aaTTTTATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGc                                                                                    <  2:3640257/93‑1 (MQ=255)
       aaTTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGc                                                                                    <  1:3178255/93‑1 (MQ=255)
        aTTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCa                                                                                   <  1:1115944/93‑1 (MQ=255)
        aTTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCa                                                                                   >  1:4539098/1‑93 (MQ=255)
         tttGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCaa                                                                                  <  2:1320789/93‑1 (MQ=255)
            gATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCa                                                                               <  1:938061/93‑1 (MQ=255)
               aaCCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAggg                                                                            <  2:1963953/93‑1 (MQ=255)
                aCCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAgggg                                                                           >  1:4416276/1‑93 (MQ=255)
                 ccATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGa                                                                          >  1:1033776/1‑93 (MQ=255)
                 ccATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGa                                                                          <  2:1604701/93‑1 (MQ=255)
                  cATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGaa                                                                         >  1:5396991/1‑93 (MQ=255)
                   aTTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGaaa                                                                        >  1:3637100/1‑93 (MQ=255)
                   aTTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGaaa                                                                        <  2:5753494/93‑1 (MQ=255)
                    ttGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAAt                                                                       <  1:5164240/93‑1 (MQ=255)
                    ttGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAAt                                                                       <  1:1211862/93‑1 (MQ=255)
                     tGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAAtt                                                                      <  2:4491524/93‑1 (MQ=255)
                        tGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTAca                                                                   <  2:5852433/93‑1 (MQ=255)
                        tGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTAca                                                                   >  2:4242812/1‑93 (MQ=255)
                           tATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTAcatca                                                                >  1:3782361/1‑93 (MQ=255)
                           tATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTAcatca                                                                >  1:2997395/1‑93 (MQ=255)
                           tATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTAcatca                                                                >  2:1491768/1‑93 (MQ=255)
                            aTGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTAcatcat                                                               >  2:231370/1‑93 (MQ=255)
                            aTGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTAcatcat                                                               >  2:3236437/1‑93 (MQ=255)
                            aTGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCGGGCAGCAAAAGGCAATCAGGGGAAATTAcatcat                                                               <  2:29254/93‑1 (MQ=255)
                              gggCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGc                                                             >  1:73196/1‑93 (MQ=255)
                               ggCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCa                                                            <  2:4247450/93‑1 (MQ=255)
                                gCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCAt                                                           <  2:4454077/93‑1 (MQ=255)
                                  tGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTc                                                         <  1:197909/93‑1 (MQ=255)
                                     cAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAg                                                      <  2:1816056/93‑1 (MQ=255)
                                      aGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAgg                                                     >  2:2089806/1‑93 (MQ=255)
                                       gAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGa                                                    >  2:5125320/1‑93 (MQ=255)
                                          aGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGaaaa                                                 <  1:5564302/93‑1 (MQ=255)
                                          aGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGaaaa                                                 >  1:4389178/1‑93 (MQ=255)
                                           gATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGaaaat                                                >  1:1567632/1‑92 (MQ=255)
                                            atatCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAAt                                               >  2:4618015/1‑93 (MQ=255)
                                               tCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTc                                            >  1:1176749/1‑93 (MQ=255)
                                                cGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTcc                                           <  2:2669071/93‑1 (MQ=255)
                                                 gCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCt                                          >  2:3178454/1‑93 (MQ=255)
                                                 gCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCt                                          <  2:5939201/93‑1 (MQ=255)
                                                 gCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCt                                          <  2:3756540/93‑1 (MQ=255)
                                                 gCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCt                                          >  2:556931/1‑93 (MQ=255)
                                                  cTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTg                                         >  2:6046506/1‑93 (MQ=255)
                                                   ttCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGt                                        <  2:2071059/93‑1 (MQ=255)
                                                   ttCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGt                                        >  2:4096133/1‑93 (MQ=255)
                                                    tCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTa                                       >  1:879183/1‑93 (MQ=255)
                                                     cGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTaa                                      <  2:6259797/93‑1 (MQ=255)
                                                      gAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTaaa                                     >  2:3453607/1‑93 (MQ=255)
                                                      gAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTaaa                                     <  2:5077600/93‑1 (MQ=255)
                                                       aaGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAAt                                    <  1:1867312/93‑1 (MQ=255)
                                                       aaGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAAt                                    <  2:3725445/93‑1 (MQ=255)
                                                        aGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAAtg                                   <  1:2224593/93‑1 (MQ=255)
                                                          aTCATAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAAtgtg                                 <  1:2723977/93‑1 (MQ=255)
                                                           tCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATgtgt                                >  1:4690544/1‑93 (MQ=255)
                                                           tCAAAGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATgtgt                                >  1:5972899/1‑93 (MQ=255)
                                                             aaaGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGttt                              >  2:1409274/1‑93 (MQ=255)
                                                             aaaGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGttt                              >  2:2987793/1‑93 (MQ=255)
                                                             aaaGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGttt                              <  1:2090858/93‑1 (MQ=255)
                                                             aaaGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGttt                              >  2:3994687/1‑93 (MQ=255)
                                                             aaaGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGttt                              >  1:4870998/1‑93 (MQ=255)
                                                              aaGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGtttt                             >  2:5032864/1‑93 (MQ=255)
                                                               aGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTc                            >  2:507353/1‑93 (MQ=255)
                                                               aGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTc                            <  2:548828/93‑1 (MQ=255)
                                                               aGATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTc                            >  1:1420042/1‑93 (MQ=255)
                                                                gATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCt                           <  1:2920074/93‑1 (MQ=255)
                                                                gATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCt                           >  2:6137138/1‑93 (MQ=255)
                                                                gATAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCt                           <  2:3928362/93‑1 (MQ=255)
                                                                  tAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTaa                         >  1:6620253/1‑93 (MQ=255)
                                                                  tAAAAAAGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTaa                         >  1:1643321/1‑93 (MQ=255)
                                                                    aaaaaGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAAtt                       <  2:3313171/93‑1 (MQ=255)
                                                                     aaaaGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATta                      >  1:1152667/1‑93 (MQ=255)
                                                                      aaaGCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATtat                     >  1:3472788/1‑93 (MQ=255)
                                                                         gCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATaaa                  >  1:4855724/1‑93 (MQ=255)
                                                                         gCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATaaa                  <  2:5423382/93‑1 (MQ=255)
                                                                         gCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATaaa                  <  2:2856324/93‑1 (MQ=255)
                                                                         gCAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATaaa                  >  1:1753747/1‑93 (MQ=255)
                                                                          cAGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAg                 <  1:2072228/93‑1 (MQ=255)
                                                                           aGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAgg                <  2:1481480/93‑1 (MQ=255)
                                                                           aGATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAgg                <  1:498701/93‑1 (MQ=255)
                                                                            gATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAACGc               >  2:2360376/1‑93 (MQ=255)
                                                                            gATTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGc               >  1:264201/1‑93 (MQ=255)
                                                                             aTTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCg              >  1:2321600/1‑93 (MQ=255)
                                                                             aTTATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCg              <  1:5502583/93‑1 (MQ=255)
                                                                              ttATCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGa             <  1:2798394/93‑1 (MQ=255)
                                                                                aTCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGAtt           <  1:2567726/93‑1 (MQ=255)
                                                                                aTCTTCTGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGAtt           <  1:4952002/93‑1 (MQ=255)
                                                                                 tcttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTc          >  2:4191673/1‑93 (MQ=255)
                                                                                 tcttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTc          >  1:4647155/1‑93 (MQ=255)
                                                                                  cttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCg         >  2:3351648/1‑93 (MQ=255)
                                                                                  cttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCg         >  2:3580996/1‑93 (MQ=255)
                                                                                   ttctGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGt        <  1:5485386/93‑1 (MQ=255)
                                                                                   ttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGt        >  2:4902696/1‑93 (MQ=255)
                                                                                   ttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGt        >  1:5676007/1‑93 (MQ=255)
                                                                                   ttctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGt        >  2:1206127/1‑93 (MQ=255)
                                                                                    tctGGCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTCTTCTAATTATAAAGGCGATTCGtt       <  1:6405711/93‑1 (MQ=255)
                                                                                       ggCAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAg    <  2:2762343/93‑1 (MQ=255)
                                                                                        gcagcaAAAGGCAATCAGGGGAAAATACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGt   <  1:5320711/93‑1 (MQ=255)
                                                                                         cAGCAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTa  <  2:249609/93‑1 (MQ=255)
                                                                                            |                                                                                         
AAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTA  >  NC_000913/1529101‑1529282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: