Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,764,440 A→G V757A (GTC→GCC)  ydiJ ← putative oxidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,764,4400AG84.6% 534.9 / 84.5 223V757A (GTC→GCC) ydiJputative oxidase
Reads supporting (aligned to +/- strand):  ref base A (10/24);  new base G (81/106);  total (91/132)
Fisher's exact test for biased strand distribution p-value = 1.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.69e-01

Only 100 of 234 total aligned reads displayed.

TGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTC  >  NC_000913/1764348‑1764529
                                                                                            |                                                                                         
    cgcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGa                                                                                       >  2:1421454/1‑93 (MQ=255)
    cgcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGa                                                                                       <  1:2154231/93‑1 (MQ=255)
     gcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAc                                                                                      >  1:2301967/1‑93 (MQ=255)
     gcTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGAc                                                                                      >  2:633576/1‑93 (MQ=255)
      cTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAca                                                                                     <  1:2702906/93‑1 (MQ=255)
       tttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcag                                                                                    >  1:2264156/1‑93 (MQ=255)
       tttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcag                                                                                    >  2:4690801/1‑93 (MQ=255)
       tttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCATCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcag                                                                                    <  2:1455877/93‑1 (MQ=255)
        ttCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGAcagc                                                                                   <  1:5011007/93‑1 (MQ=255)
         tctgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcagca                                                                                  <  1:3260714/93‑1 (MQ=255)
          ctgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGAcagcag                                                                                 >  1:194683/1‑93 (MQ=255)
          ctgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGAcagcag                                                                                 <  2:6205590/93‑1 (MQ=255)
           tgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACagcagc                                                                                <  1:5281505/93‑1 (MQ=255)
           tgctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACagcagc                                                                                >  2:2829273/1‑93 (MQ=255)
            gctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCg                                                                               <  1:4612882/93‑1 (MQ=255)
             ctctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCgg                                                                              <  2:3169951/93‑1 (MQ=255)
              tctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGc                                                                             >  2:6479688/1‑93 (MQ=255)
              tctgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGc                                                                             >  1:578997/1‑93 (MQ=255)
                tgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCaa                                                                           <  1:5205880/93‑1 (MQ=255)
                tgcATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCCAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCaa                                                                           >  1:6528344/1‑93 (MQ=255)
                   aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATc                                                                        <  1:3116570/93‑1 (MQ=255)
                   aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATc                                                                        >  1:2056280/1‑93 (MQ=255)
                   aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATc                                                                        <  1:4409583/93‑1 (MQ=255)
                   aTTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATc                                                                        <  2:4822995/93‑1 (MQ=255)
                     tGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCaa                                                                      >  1:5167071/1‑93 (MQ=255)
                      gagagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAc                                                                     >  1:755885/1‑93 (MQ=255)
                      gagagaTTCAAGCTGTTCCAACGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAc                                                                     >  1:6397362/1‑93 (MQ=255)
                       agagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAAcc                                                                    >  2:5702679/1‑93 (MQ=255)
                        gagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCa                                                                   <  1:1590181/93‑1 (MQ=255)
                        gagaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCa                                                                   >  2:4480643/1‑93 (MQ=255)
                         agaTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCAt                                                                  <  1:364486/93‑1 (MQ=255)
                           aTTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGc                                                                <  1:1806288/93‑1 (MQ=255)
                            ttCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGcc                                                               <  1:5632267/93‑1 (MQ=255)
                            ttCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGcc                                                               >  1:478289/1‑93 (MQ=255)
                              cAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGa                                                             >  2:5504242/1‑93 (MQ=255)
                              cAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGa                                                             <  2:2774550/93‑1 (MQ=255)
                                aGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGata                                                           >  2:5677455/1‑93 (MQ=255)
                                aGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGata                                                           >  2:5318694/1‑93 (MQ=255)
                                  cTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATg                                                         <  1:6459877/93‑1 (MQ=255)
                                    gTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtt                                                       >  1:2508421/1‑93 (MQ=255)
                                    gTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtt                                                       >  2:614831/1‑93 (MQ=255)
                                    gTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGtt                                                       <  1:606691/93‑1 (MQ=255)
                                      tCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtttt                                                     >  1:892788/1‑93 (MQ=255)
                                      tCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGtttt                                                     >  2:592647/1‑93 (MQ=255)
                                       ccAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGttttt                                                    <  2:4094524/93‑1 (MQ=255)
                                       ccAGCGTCATGTGTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGttttt                                                    <  1:1759085/93‑1 (MQ=255)
                                         aGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTcc                                                  >  2:3645530/1‑93 (MQ=255)
                                         aGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTcc                                                  <  1:5441781/93‑1 (MQ=255)
                                         aGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTcc                                                  <  1:6276828/93‑1 (MQ=255)
                                           cGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCga                                                <  2:1292151/93‑1 (MQ=255)
                                           cGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCga                                                <  1:5909289/93‑1 (MQ=255)
                                             tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga                                              <  2:1296445/93‑1 (MQ=255)
                                             tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga                                              >  2:3151868/1‑93 (MQ=255)
                                             tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga                                              >  1:1255109/1‑93 (MQ=255)
                                             tCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCgaga                                              >  1:3419039/1‑93 (MQ=255)
                                                 gTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGttt                                          >  1:3515521/1‑93 (MQ=255)
                                                  tttGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTg                                         <  1:2537280/93‑1 (MQ=255)
                                                   ttGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTgc                                        <  1:3777087/93‑1 (MQ=255)
                                                    tGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTgcg                                       >  1:2795995/1‑93 (MQ=255)
                                                        gAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCAcc                                   <  1:4482249/93‑1 (MQ=255)
                                                        gAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTACGAGAGTTTGCGCAcc                                   >  1:2892398/1‑93 (MQ=255)
                                                          gCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAg                                 <  2:43824/93‑1 (MQ=255)
                                                          gCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAg                                 <  2:1993088/93‑1 (MQ=255)
                                                           ggaagCCCCACCATTTGTTGTTGTAGCAAGGGGGCCGACAGCAGCGGCGAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGc                                <  2:4908191/89‑1 (MQ=255)
                                                            gATGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCg                               >  2:2141140/1‑93 (MQ=255)
                                                             aTGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCgg                              >  1:975086/1‑93 (MQ=255)
                                                              tGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGc                             <  2:1516854/93‑1 (MQ=255)
                                                              tGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGc                             >  1:3944049/1‑93 (MQ=255)
                                                              tGCCCCACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGc                             <  2:4033551/93‑1 (MQ=255)
                                                                ccccACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTg                           <  1:5481251/93‑1 (MQ=255)
                                                                 cccACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTgg                          <  1:5401266/93‑1 (MQ=255)
                                                                 cccACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTgg                          >  1:3829036/1‑93 (MQ=255)
                                                                 cccACCATTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTgg                          >  2:6632246/1‑93 (MQ=255)
                                                                  ccaccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGt                         <  1:6589077/93‑1 (MQ=255)
                                                                   caccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGtt                        <  2:6016370/93‑1 (MQ=255)
                                                                   caccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGtt                        <  2:495875/93‑1 (MQ=255)
                                                                    accaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTa                       >  2:3257/1‑93 (MQ=255)
                                                                    accaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTa                       >  2:2524867/1‑93 (MQ=255)
                                                                     ccaTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTaa                      <  2:790749/93‑1 (MQ=255)
                                                                      caTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAAt                     <  1:3003949/93‑1 (MQ=255)
                                                                      caTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAAt                     <  2:1172637/93‑1 (MQ=255)
                                                                       aTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATg                    >  1:1066266/1‑93 (MQ=255)
                                                                       aTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATg                    <  2:5400099/93‑1 (MQ=255)
                                                                       aTTTGTTGTTGTAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATg                    >  2:2460273/1‑93 (MQ=255)
                                                                            ttgttgtAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATgaagaa               <  2:2198286/93‑1 (MQ=255)
                                                                              gttgtAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGt             >  1:6165825/1‑93 (MQ=255)
                                                                                tgtAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGATTGCGCACCAGCGGCTGGTTTATGAAGAAGTTa           >  1:2053165/1‑93 (MQ=255)
                                                                                 gtAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaa          <  1:1764188/93‑1 (MQ=255)
                                                                                  tAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaaa         <  2:1773040/93‑1 (MQ=255)
                                                                                  tAGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGGTAATGAAGAAGTTaaa         >  1:6440891/1‑93 (MQ=255)
                                                                                  tAGCGAGGGCGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaaa         <  1:1484815/93‑1 (MQ=255)
                                                                                  gaGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTaaa         <  1:4635106/92‑1 (MQ=255)
                                                                                   aGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAg        <  1:4207805/93‑1 (MQ=255)
                                                                                   aGCGAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAg        <  1:1552067/93‑1 (MQ=255)
                                                                                     cGAGGGGTCCGACAGCAGCGGCAAATCAACCATGCAGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGt      <  1:4733010/93‑1 (MQ=255)
                                                                                      gAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtt     >  1:4945413/1‑93 (MQ=255)
                                                                                      gAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtt     >  1:1411691/1‑93 (MQ=255)
                                                                                      gAGGGGGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtt     <  1:3594901/93‑1 (MQ=255)
                                                                                        ggggGCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGtttt   <  2:5649251/93‑1 (MQ=255)
                                                                                         ggggCCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTc  <  2:1625365/93‑1 (MQ=255)
                                                                                            |                                                                                         
TGCGCGCTTTCTGCTCTGCATTGAGAGATTCAAGCTGTTCCAGCGTCATGTTTGCCGAGCGATGCCCCACCATTTGTTGTTGTAGCGAGGGGACCGACAGCAGCGGCAAATCAACCATGCCGATATGTTTTTCCGAGAGTTTGCGCACCAGCGGCTGGTTAATGAAGAAGTTAAAGGTTTTC  >  NC_000913/1764348‑1764529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: