Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,315,162 T→C Q896R (CAG→CGG)  rcsC ← RcsC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,315,1620TC85.4% 623.1 / 92.7 246Q896R (CAG→CGG) rcsCRcsC
Reads supporting (aligned to +/- strand):  ref base T (21/15);  new base C (105/105);  total (126/120)
Fisher's exact test for biased strand distribution p-value = 3.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.22e-01

Only 100 of 268 total aligned reads displayed.

CCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCA  >  NC_000913/2315070‑2315251
                                                                                            |                                                                                         
cccTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCgct                                                                                           <  1:1464612/93‑1 (MQ=255)
 ccTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCgctg                                                                                          >  1:4971467/1‑93 (MQ=255)
  ctctCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACcgccgc                                                                                         >  1:4259668/1‑93 (MQ=255)
     tcGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTtc                                                                                      >  2:6498123/1‑93 (MQ=255)
     tcGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTtc                                                                                      >  2:4304144/1‑93 (MQ=255)
     tcGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTtc                                                                                      >  1:6614678/1‑93 (MQ=255)
     tcGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTtc                                                                                      <  2:2205967/93‑1 (MQ=255)
      cGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTtct                                                                                     <  1:6289331/93‑1 (MQ=255)
        gCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGGCACCGCCGCTTctct                                                                                   >  2:3037656/1‑93 (MQ=255)
        gCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTctct                                                                                   >  1:4699803/1‑93 (MQ=255)
        gCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTctct                                                                                   >  2:5858667/1‑93 (MQ=255)
          atatAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTc                                                                                 <  1:4403975/93‑1 (MQ=255)
          atatAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTc                                                                                 <  1:3861127/93‑1 (MQ=255)
          atatAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTc                                                                                 <  1:6185109/93‑1 (MQ=255)
            ataACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAg                                                                               <  1:5097913/93‑1 (MQ=255)
               aCGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCa                                                                            >  1:295538/1‑93 (MQ=255)
                 gTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAAc                                                                          >  2:362715/1‑93 (MQ=255)
                  tCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACg                                                                         >  2:3810846/1‑93 (MQ=255)
                    aGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCa                                                                       <  2:6010343/93‑1 (MQ=255)
                    aGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCa                                                                       <  1:1100041/93‑1 (MQ=255)
                    aGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCa                                                                       <  2:1942595/93‑1 (MQ=255)
                     gCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCAt                                                                      <  1:894661/93‑1 (MQ=255)
                      cGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCAtt                                                                     >  2:6144757/1‑93 (MQ=255)
                       gTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTa                                                                    >  2:5768715/1‑93 (MQ=255)
                        tCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAg                                                                   >  2:2365770/1‑93 (MQ=255)
                        tCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAg                                                                   <  1:4771368/93‑1 (MQ=255)
                        tCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAg                                                                   >  1:1540429/1‑93 (MQ=255)
                         cTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGc                                                                  >  2:696365/1‑93 (MQ=255)
                           gTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAg                                                                <  2:5673040/93‑1 (MQ=255)
                           gTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAg                                                                <  1:2684329/93‑1 (MQ=255)
                            ttttATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGt                                                               >  2:788650/1‑93 (MQ=255)
                               tATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTAc                                                            <  2:4826834/93‑1 (MQ=255)
                                 tCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTc                                                          <  2:2467656/93‑1 (MQ=255)
                                 tCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTc                                                          <  1:1012583/93‑1 (MQ=255)
                                  cacaTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTcc                                                         <  1:1421062/93‑1 (MQ=255)
                                   acaTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCg                                                        >  2:3277273/1‑93 (MQ=255)
                                   acaTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCg                                                        >  2:1248007/1‑93 (MQ=255)
                                   acaTCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCg                                                        >  1:1631513/1‑93 (MQ=255)
                                      tCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGAtt                                                     >  1:5822590/1‑93 (MQ=255)
                                       ccAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTa                                                    >  2:6100661/1‑93 (MQ=255)
                                         aGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTAcc                                                  <  2:1098669/93‑1 (MQ=255)
                                          gCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCg                                                 >  2:3528763/1‑93 (MQ=255)
                                          gCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCg                                                 >  1:3701663/1‑93 (MQ=255)
                                            gTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGc                                               >  2:6622189/1‑93 (MQ=255)
                                              tACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCaa                                             >  2:5465034/1‑93 (MQ=255)
                                               aCCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAAc                                            >  1:171644/1‑93 (MQ=255)
                                                 cGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGt                                          <  2:5301178/93‑1 (MQ=255)
                                                  ggCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTc                                         >  1:5234123/1‑93 (MQ=255)
                                                  ggCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTc                                         <  1:3310375/93‑1 (MQ=255)
                                                  ggCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTc                                         >  2:5530070/1‑93 (MQ=255)
                                                   gCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCCGCAACGTCa                                        >  1:3476953/1‑93 (MQ=255)
                                                    cTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAg                                       <  2:1304803/93‑1 (MQ=255)
                                                    cTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAg                                       >  1:689323/1‑93 (MQ=255)
                                                     ttCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGt                                      >  2:6240601/1‑93 (MQ=255)
                                                      tCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTc                                     >  2:6289878/1‑93 (MQ=255)
                                                       cGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTca                                    >  2:4994742/1‑92 (MQ=255)
                                                          cAGGCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCaa                                 <  2:3141234/93‑1 (MQ=255)
                                                            ggCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACt                               <  2:4392507/93‑1 (MQ=255)
                                                             gCAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTg                              >  1:5571413/1‑93 (MQ=255)
                                                              cAGCTGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGa                             <  1:1289685/93‑1 (MQ=255)
                                                                  tGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGaa                         <  2:5121974/93‑1 (MQ=255)
                                                                  tGTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGaa                         <  2:4580140/93‑1 (MQ=255)
                                                                   gTCCATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAt                        >  2:1723968/1‑93 (MQ=255)
                                                                     ccATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgc                      >  2:4106217/1‑93 (MQ=255)
                                                                     ccATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgc                      <  2:1000963/93‑1 (MQ=255)
                                                                      cATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcg                     >  2:931519/1‑93 (MQ=255)
                                                                      cATACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcg                     >  1:6372610/1‑93 (MQ=255)
                                                                       aTACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgt                    >  1:398264/1‑93 (MQ=255)
                                                                       aTACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgt                    <  1:5991833/93‑1 (MQ=255)
                                                                       aTACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgt                    >  2:5921182/1‑93 (MQ=255)
                                                                       aTACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgt                    <  2:5796953/93‑1 (MQ=255)
                                                                       aTACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgt                    <  1:3390975/93‑1 (MQ=255)
                                                                        tACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgtt                   <  1:797592/93‑1 (MQ=255)
                                                                        tACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgtt                   <  2:1832803/93‑1 (MQ=255)
                                                                        tACCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgtt                   <  2:5244858/93‑1 (MQ=255)
                                                                         aCCGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgttg                  <  2:1410121/93‑1 (MQ=255)
                                                                           cGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgttgcg                <  2:1547621/93‑1 (MQ=255)
                                                                           cGGACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgttgcg                >  1:225562/1‑93 (MQ=255)
                                                                            ggACTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAAtgcgttgcgt               <  1:435210/93‑1 (MQ=255)
                                                                             gACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTc              <  1:1983767/93‑1 (MQ=255)
                                                                              aCTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCa             >  1:3026438/1‑93 (MQ=255)
                                                                              aCTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCa             >  1:5121721/1‑93 (MQ=255)
                                                                               cTCCAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCaa            >  2:3996022/1‑93 (MQ=255)
                                                                                 ccAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTAcc                                                  <  1:1892956/53‑1 (MQ=255)
                                                                                 ccAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGc          <  2:2882600/93‑1 (MQ=255)
                                                                                 ccAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGc          <  2:1963960/93‑1 (MQ=255)
                                                                                 ccAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGc          <  2:2047036/93‑1 (MQ=255)
                                                                                  cAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCg         <  2:1218287/93‑1 (MQ=255)
                                                                                  cAGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTAATCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCg         >  1:3125394/1‑93 (MQ=255)
                                                                                   aGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCgg        >  2:4514346/1‑93 (MQ=255)
                                                                                   aGACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCgg        >  1:6516698/1‑93 (MQ=255)
                                                                                    gatacCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGATGCGTCACGCggc       >  1:2921354/4‑92 (MQ=255)
                                                                                    gACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGt       <  1:3903202/93‑1 (MQ=255)
                                                                                    gACACCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGt       >  1:6035655/1‑93 (MQ=255)
                                                                                     acacCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTa      <  1:2029999/93‑1 (MQ=255)
                                                                                     acacCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTa      >  1:5673/1‑93 (MQ=255)
                                                                                      cacCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTaa     <  1:2840141/93‑1 (MQ=255)
                                                                                      cacCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTaa     <  2:272966/93‑1 (MQ=255)
                                                                                       acCGCCGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAc    >  2:472107/1‑93 (MQ=255)
                                                                                        ccgccgCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAAcc   <  2:4091588/93‑1 (MQ=255)
                                                                                            |                                                                                         
CCCTCTCGGCATATAACGTCAGCGTCTGTTTTATCACATCCAGCGTTACCGGCTTCGACAGGCAGCTGTCCATACCGGACTCCAGACACCGCTGCTTCTCTTCAGCCAACGCATTAGCAGTTACTCCGATTACCGGCAACGTCAGTCCCAACTGACGAATGCGTTGCGTCAAGCGGTAACCA  >  NC_000913/2315070‑2315251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: