Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,698,071 T→C intergenic (+549/‑121) yhjU → / → yhjV hypothetical protein/putative transporter protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,698,0710TC89.2% 763.7 / 67.2 268intergenic (+549/‑121)yhjU/yhjVhypothetical protein/putative transporter protein
Reads supporting (aligned to +/- strand):  ref base T (13/16);  new base C (128/111);  total (141/127)
Fisher's exact test for biased strand distribution p-value = 4.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 282 total aligned reads displayed.

TCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCG  >  NC_000913/3697979‑3698163
                                                                                            |                                                                                            
tCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCt                                                                                              <  1:5299487/93‑1 (MQ=255)
      tttGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAg                                                                                        <  2:4651649/93‑1 (MQ=255)
      tttGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAg                                                                                        >  1:1018696/1‑93 (MQ=255)
      tttGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAg                                                                                        >  2:3836344/1‑93 (MQ=255)
      tttGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAg                                                                                        >  2:1985063/1‑93 (MQ=255)
      tttGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAg                                                                                        >  2:1431821/1‑93 (MQ=255)
      tttGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAg                                                                                        <  1:3231015/93‑1 (MQ=255)
          cAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGaa                                                                                    <  2:5864783/93‑1 (MQ=255)
          cAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGaa                                                                                    >  1:879177/1‑93 (MQ=255)
           aaTAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAAt                                                                                   >  1:1338098/1‑93 (MQ=255)
           aaTAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAAt                                                                                   >  2:2520802/1‑93 (MQ=255)
            aTAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATc                                                                                  >  1:5596527/1‑93 (MQ=255)
            aTAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATc                                                                                  <  1:2363559/93‑1 (MQ=255)
             tAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCt                                                                                 <  2:7143/93‑1 (MQ=255)
             tAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCt                                                                                 >  1:2968183/1‑93 (MQ=255)
             tAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCt                                                                                 >  2:1014054/1‑93 (MQ=255)
                ttGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGtt                                                                              <  2:1292306/93‑1 (MQ=255)
                ttGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGtt                                                                              <  2:1594506/93‑1 (MQ=255)
                ttGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGtt                                                                              <  2:6094563/93‑1 (MQ=255)
                ttGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGtt                                                                              >  2:2636231/1‑93 (MQ=255)
                ttGCAGTTCATATCAGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGtt                                                                              >  1:4053376/1‑93 (MQ=255)
                    aGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCt                                                                          <  1:1672217/93‑1 (MQ=255)
                     gTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTc                                                                         >  1:4846346/1‑93 (MQ=255)
                     gTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTc                                                                         >  2:3069470/1‑93 (MQ=255)
                     gTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTc                                                                         >  2:5928416/1‑93 (MQ=255)
                       tCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAt                                                                       <  1:6207491/93‑1 (MQ=255)
                       tCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAt                                                                       <  1:4667439/93‑1 (MQ=255)
                        cATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtt                                                                      <  1:2048072/93‑1 (MQ=255)
                        cATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtt                                                                      >  2:3457662/1‑93 (MQ=255)
                         atatCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAttt                                                                     >  2:406354/1‑93 (MQ=255)
                          tatCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtttt                                                                    >  1:6295042/1‑93 (MQ=255)
                          tatCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtttt                                                                    <  2:6361073/93‑1 (MQ=255)
                          tatCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtttt                                                                    >  2:3381445/1‑93 (MQ=255)
                          tatCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtttt                                                                    <  1:4898413/93‑1 (MQ=255)
                          tatCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAtttt                                                                    <  2:4401712/93‑1 (MQ=255)
                           atCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAttttt                                                                   >  2:3648517/1‑93 (MQ=255)
                           atCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAttttt                                                                   >  1:1574436/1‑93 (MQ=255)
                           atCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAttttt                                                                   >  2:3540260/1‑93 (MQ=255)
                           atCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCAttttt                                                                   >  2:4823683/1‑93 (MQ=255)
                              cGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTAc                                                                >  2:5087647/1‑93 (MQ=255)
                               gggCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACa                                                               <  2:6647033/93‑1 (MQ=255)
                                 gCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATa                                                             >  1:457512/1‑93 (MQ=255)
                                  cTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATAc                                                            <  1:4144169/93‑1 (MQ=255)
                                  cTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATAc                                                            >  2:1110588/1‑93 (MQ=255)
                                   tGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACt                                                           <  2:4612923/93‑1 (MQ=255)
                                   tGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACt                                                           >  1:6610667/1‑93 (MQ=255)
                                   tGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACt                                                           <  2:6461367/93‑1 (MQ=255)
                                     aCTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGc                                                         <  1:3677405/93‑1 (MQ=255)
                                        ccAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTa                                                      <  1:18728/93‑1 (MQ=255)
                                         cAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTAt                                                     >  2:2824076/1‑93 (MQ=255)
                                         cAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTAt                                                     >  1:4314430/1‑93 (MQ=255)
                                         cAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTAt                                                     >  1:2586013/1‑93 (MQ=255)
                                          aGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTAtt                                                    <  2:2680314/93‑1 (MQ=255)
                                          aGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTAtt                                                    >  1:735127/1‑93 (MQ=255)
                                           gACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTc                                                   >  1:1475312/1‑93 (MQ=255)
                                             cTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGa                                                 <  2:1056047/93‑1 (MQ=255)
                                              tGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGAc                                                <  1:904337/93‑1 (MQ=255)
                                              tGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGAc                                                <  1:2155620/93‑1 (MQ=255)
                                              tGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGAc                                                <  2:3197109/93‑1 (MQ=255)
                                              tGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGAc                                                >  2:2731760/1‑93 (MQ=255)
                                                gTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACtt                                              >  1:4805052/1‑93 (MQ=255)
                                                       aaTGCGCAATTTTGTAGACTTGCGCCTCCTCGCGTCCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCAcc                                       <  1:3828921/93‑1 (MQ=255)
                                                       aaTGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCAcc                                       <  2:2934141/93‑1 (MQ=255)
                                                       aaTGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCAcc                                       >  1:386697/1‑93 (MQ=255)
                                                       aaTGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCAcc                                       >  1:6082283/1‑93 (MQ=255)
                                                        aTGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCt                                      <  1:4457345/93‑1 (MQ=255)
                                                          gcgcAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCAACCTGt                                    >  1:6524556/1‑93 (MQ=255)
                                                            gcAATTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTg                                  <  2:3026879/93‑1 (MQ=255)
                                                              aaTTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTgcg                                >  2:400923/1‑93 (MQ=255)
                                                              aaTTTTGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTgcg                                >  1:3122453/1‑93 (MQ=255)
                                                               aTTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTgcgc                               <  2:2309563/93‑1 (MQ=255)
                                                                ttttGTAGAATTGCGCCTCCTCGCGTCCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCa                              <  2:5590692/93‑1 (MQ=255)
                                                                  ttGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAag                            <  2:3235247/93‑1 (MQ=255)
                                                                  ttGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAag                            >  1:1603600/1‑93 (MQ=255)
                                                                  ttGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAag                            >  2:5345066/1‑93 (MQ=255)
                                                                   tGTAGAATTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAaga                           <  1:1114836/93‑1 (MQ=255)
                                                                         aTTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACt                     <  1:1763395/93‑1 (MQ=255)
                                                                         aTTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACt                     >  1:2736379/1‑93 (MQ=255)
                                                                         aTTGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACt                     >  1:6174924/1‑93 (MQ=255)
                                                                          ttGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTg                    <  2:1750151/93‑1 (MQ=255)
                                                                          ttGCGCCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTg                    <  1:5929633/93‑1 (MQ=255)
                                                                            gcgcCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTggg                  <  2:4514257/93‑1 (MQ=255)
                                                                            gcgcCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTggg                  >  1:3470771/1‑93 (MQ=255)
                                                                             cgcCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGt                 <  1:4728327/93‑1 (MQ=255)
                                                                             cgcCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGt                 <  1:395442/93‑1 (MQ=255)
                                                                              gcCTCCTCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGtt                >  2:6227927/1‑93 (MQ=255)
                                                                               cctcctCGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGttt               <  2:4304270/93‑1 (MQ=255)
                                                                                 tcctcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTAt             >  1:1959385/1‑93 (MQ=255)
                                                                                 tcctcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTAt             >  2:5463478/1‑93 (MQ=255)
                                                                                  cctcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTAtt            <  1:5730070/93‑1 (MQ=255)
                                                                                  cctcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTAtt            <  2:5721573/93‑1 (MQ=255)
                                                                                   ctcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTc           >  2:3416952/1‑93 (MQ=255)
                                                                                   ctcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTc           >  1:5058259/1‑93 (MQ=255)
                                                                                    tcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCa          <  2:3891100/93‑1 (MQ=255)
                                                                                    tcGCGACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCa          <  2:814261/93‑1 (MQ=255)
                                                                                     cgcgACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCAt         <  1:6431647/93‑1 (MQ=255)
                                                                                      gcgACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCAtt        <  1:5893063/93‑1 (MQ=255)
                                                                                       cgACCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCAttt       <  2:1916039/93‑1 (MQ=255)
                                                                                         aCCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCAttttt     >  1:1227707/1‑93 (MQ=255)
                                                                                         aCCCCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCAttttt     >  2:4135618/1‑93 (MQ=255)
                                                                                            |                                                                                            
TCTTTATTTGCAATAGTTGCAGTTCATATCCGGGCTGACTCCAGACTGGTAGTGAAATGCGCAATTTTGTAGAATTGCGCCTCCTCGCGACCTCCCCAGTGAATCTGTTGCCTCATTTTTTACATACTGCGTATTCGACTTCTCCACCTGTTGCGCAAGAGAAACTGGGTTTATTCATTTTTGCG  >  NC_000913/3697979‑3698163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: