BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,790,609	G→A	D239D (GAC→GAT)	htrL ←	HtrL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,790,609	0	G	A	100.0%	815.9 / NA	209	D239D (GAC→GAT)	htrL	HtrL
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (99/110); total (99/110)

Only 100 of 213 total aligned reads displayed.

GCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGGTCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAAC  >  NC_000913/3790519‑3790698

gcGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATc                                                                                         >  2:2666400/1‑93 (MQ=255)

gcGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATc                                                                                         >  2:4254018/1‑93 (MQ=255)

gcGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATc                                                                                         >  2:6571830/1‑93 (MQ=255)

 cGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCa                                                                                        >  2:5148622/1‑93 (MQ=255)

  gAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCAt                                                                                       >  2:4017856/1‑93 (MQ=255)

   aaaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGatcatc                                                                                      <  2:4285560/93‑1 (MQ=255)

    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     >  2:1418431/1‑93 (MQ=255)

    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     <  1:5545247/93‑1 (MQ=255)

    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     >  2:3613941/1‑93 (MQ=255)

    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     >  2:4909069/1‑93 (MQ=255)

      cAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTc                                                                                   <  2:731845/93‑1 (MQ=255)

        aaTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCca                                                                                 >  2:88264/1‑93 (MQ=255)

         aTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCcac                                                                                >  1:114066/1‑93 (MQ=255)

         aTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCcac                                                                                <  2:5218236/93‑1 (MQ=255)

         aTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCcac                                                                                >  1:72275/1‑93 (MQ=255)

           cGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACaa                                                                              <  2:3168109/93‑1 (MQ=255)

            gAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAAt                                                                             >  1:5431623/1‑93 (MQ=255)

            gAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAAt                                                                             <  1:4292180/93‑1 (MQ=255)

              aCCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGt                                                                           >  1:2232407/1‑93 (MQ=255)

                cATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGtta                                                                         <  2:6010566/93‑1 (MQ=255)

                  ttttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatt                                                                       <  1:6309266/93‑1 (MQ=255)

                   tttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatta                                                                      <  2:657246/93‑1 (MQ=255)

                   tttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatta                                                                      <  1:2521151/93‑1 (MQ=255)

                   tttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatta                                                                      >  1:4104958/1‑93 (MQ=255)

                      ccTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTAttt                                                                   <  2:3581926/93‑1 (MQ=255)

                      ccTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTAttt                                                                   >  2:1917546/1‑93 (MQ=255)

                       ctctCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTa                                                                  <  1:2681441/93‑1 (MQ=255)

                       ctctCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTa                                                                  >  1:6069910/1‑93 (MQ=255)

                         ctcCCCAGATAGTTTAGGTTGAAGATATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:5657134/93‑1 (MQ=255)

                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  2:1765766/93‑1 (MQ=255)

                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:136385/93‑1 (MQ=255)

                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:3248416/93‑1 (MQ=255)

                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                >  2:6213265/1‑93 (MQ=255)

                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:1194117/93‑1 (MQ=255)

                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               <  2:2084111/93‑1 (MQ=255)

                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  1:1403200/1‑93 (MQ=255)

                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  2:5059193/1‑93 (MQ=255)

                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  1:2027143/1‑93 (MQ=255)

                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  1:3041519/1‑93 (MQ=255)

                           ccccAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtgt                                                              >  1:635279/1‑93 (MQ=255)

                             ccAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTa                                                            <  2:6264398/93‑1 (MQ=255)

                             ccAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTa                                                            >  2:1968707/1‑93 (MQ=255)

                               aGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAtt                                                          <  2:3744724/93‑1 (MQ=255)

                                gATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAttt                                                         <  2:2211567/93‑1 (MQ=255)

                                  tAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAttttt                                                       <  1:3764956/93‑1 (MQ=255)

                                  tAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAttttt                                                       >  2:5536958/1‑93 (MQ=255)

                                   aGTTTAGGTTGAAGAGATCGGGGCGTTTGTACTAGCACATGACAAACATGCCCTGATCCTCGTCCACAATGTTATTATTTAGTGTTAtttttt                                                      >  1:1145672/1‑93 (MQ=255)

                                   aGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAtttttt                                                      <  1:1600809/93‑1 (MQ=255)

                                    gTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTg                                                     >  2:3086810/1‑93 (MQ=255)

                                     tttAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGa                                                    <  1:4766559/93‑1 (MQ=255)

                                       tAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACt                                                  <  2:1050527/93‑1 (MQ=255)

                                       tAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACt                                                  <  1:6130138/93‑1 (MQ=255)

                                         ggTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACttt                                                >  2:2950921/1‑93 (MQ=255)

                                            tGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCa                                             >  2:3271236/1‑93 (MQ=255)

                                            tGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCa                                             <  1:5878025/93‑1 (MQ=255)

                                             gAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAg                                            >  1:6473256/1‑93 (MQ=255)

                                               agagATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGaa                                          >  1:1521644/1‑93 (MQ=255)

                                                 agaTCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACt                                        <  1:2934117/93‑1 (MQ=255)

                                                 agaTCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACt                                        <  2:842688/93‑1 (MQ=255)

                                                     cGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAtt                                    <  1:846326/93‑1 (MQ=255)

                                                      ggggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAttt                                   >  2:1647687/1‑93 (MQ=255)

                                                      ggggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAttt                                   <  2:5589869/93‑1 (MQ=255)

                                                       gggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTta                                  >  2:3510991/1‑93 (MQ=255)

                                                       gggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTta                                  >  2:470195/1‑93 (MQ=255)

                                                        ggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtat                                 >  1:3107048/1‑93 (MQ=255)

                                                        ggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtat                                 >  2:3778803/1‑93 (MQ=255)

                                                         gCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtata                                <  2:6300552/93‑1 (MQ=255)

                                                         gCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtata                                >  1:3567716/1‑93 (MQ=255)

                                                          cGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAg                               <  2:6386084/93‑1 (MQ=255)

                                                           gTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGa                              >  2:2281320/1‑93 (MQ=255)

                                                           gTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGa                              >  1:6216709/1‑93 (MQ=255)

                                                            tttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGaa                             >  2:1958572/1‑93 (MQ=255)

                                                            tttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGaa                             >  1:2391977/1‑93 (MQ=255)

                                                             ttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAt                            >  2:2532863/1‑93 (MQ=255)

                                                             ttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAt                            <  2:6514139/93‑1 (MQ=255)

                                                             ttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAt                            >  1:3143980/1‑93 (MQ=255)

                                                                   tAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTc                      <  2:2588040/93‑1 (MQ=255)

                                                                   tAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTc                      >  1:3818147/1‑93 (MQ=255)

                                                                    aGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTcc                     >  1:2072004/1‑93 (MQ=255)

                                                                    aGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTcc                     <  2:2436754/93‑1 (MQ=255)

                                                                     gCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCa                    <  1:5038979/93‑1 (MQ=255)

                                                                     gCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCa                    <  2:1871097/93‑1 (MQ=255)

                                                                      cacaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAt                   <  2:2828940/93‑1 (MQ=255)

                                                                      cacaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAt                   <  2:6177171/93‑1 (MQ=255)

                                                                       acaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAtt                  >  1:4598860/1‑93 (MQ=255)

                                                                       acaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAtt                  <  2:5931360/93‑1 (MQ=255)

                                                                         aTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTa                >  2:4604432/1‑93 (MQ=255)

                                                                           gACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATg              <  2:3819125/93‑1 (MQ=255)

                                                                           gACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATg              <  2:69870/93‑1 (MQ=255)

                                                                            aCAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGc             >  1:2948873/1‑93 (MQ=255)

                                                                            aCAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGc             <  1:4837082/93‑1 (MQ=255)

                                                                             cAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCt            <  2:3951273/93‑1 (MQ=255)

                                                                             cAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCt            <  1:4959867/93‑1 (MQ=255)

                                                                             cAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCt            <  1:1706219/93‑1 (MQ=255)

                                                                                aaaTGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCtgtg         >  1:1446739/1‑93 (MQ=255)

                                                                                  aTGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGaa       >  1:2721068/1‑93 (MQ=255)

                                                                                  aTGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGaa       <  1:3411408/93‑1 (MQ=255)

                                                                                   tGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAAc      <  2:3992668/93‑1 (MQ=255)

                                                                                      ccTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACcaa   <  2:1001092/93‑1 (MQ=255)

                                                                                       cTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACcaac  <  2:583783/93‑1 (MQ=255)

GCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGGTCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAAC  >  NC_000913/3790519‑3790698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`