Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 693,605 C→T G192S (GGC→AGC)  yleA ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913693,6050CT99.6% 908.8 / ‑4.7 233G192S (GGC→AGC) yleAhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (106/126);  total (106/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01

Only 100 of 247 total aligned reads displayed.

GCAGATCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCCCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGCAGTAGG  >  NC_000913/693515‑693694
                                                                                          |                                                                                         
gcagATCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGctct                                                                                         >  1:3880308/1‑93 (MQ=255)
gcagATCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGctct                                                                                         >  2:5227356/1‑93 (MQ=255)
 cagATCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTg                                                                                        <  1:1211684/93‑1 (MQ=255)
  aggtCGGCAAACGATGCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCAAGCACGCTCTGa                                                                                       <  1:1137597/90‑1 (MQ=255)
  agATCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGa                                                                                       >  2:1735816/1‑93 (MQ=255)
    gccGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGc                                                                                     <  1:1354862/91‑1 (MQ=255)
    aTCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGc                                                                                     >  1:5867352/1‑93 (MQ=255)
     tCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGcc                                                                                    >  1:1798870/1‑93 (MQ=255)
      cGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCg                                                                                   >  1:4832132/1‑93 (MQ=255)
       ggCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGc                                                                                  <  2:4829588/93‑1 (MQ=255)
        gCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCa                                                                                 >  2:2926982/1‑93 (MQ=255)
        gCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCACGTTGACTTCACGCACGCTCTGAGCCGCa                                                                                 >  2:663813/1‑93 (MQ=255)
          aaaCGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAg                                                                               <  1:5564140/93‑1 (MQ=255)
          aaaCGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTCAGCCGCAAg                                                                               >  2:1317191/1‑93 (MQ=255)
           aaCGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGc                                                                              >  2:1009901/1‑93 (MQ=255)
           aaCGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGc                                                                              >  1:2978944/1‑93 (MQ=255)
           aaCGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGc                                                                              >  1:3217409/1‑93 (MQ=255)
           aaCGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGc                                                                              >  1:529120/1‑93 (MQ=255)
           aaCGATCCGGTGGTGCCGTCATAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGc                                                                              <  2:2421523/93‑1 (MQ=255)
              gATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTgg                                                                           <  2:4044782/93‑1 (MQ=255)
               aTCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTggg                                                                          >  2:4062642/1‑93 (MQ=255)
               aTCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTggg                                                                          >  1:4779136/1‑93 (MQ=255)
               aTCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTggg                                                                          >  2:82708/1‑93 (MQ=255)
                tCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGc                                                                         >  2:4580250/1‑93 (MQ=255)
                  cGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCaa                                                                       <  2:19976/93‑1 (MQ=255)
                     gtgtgCCGTCATAGTTTTCCCCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAAtct                                                                    <  1:4406313/91‑1 (MQ=255)
                       gtgCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCa                                                                  <  1:877195/93‑1 (MQ=255)
                       gtgCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCa                                                                  <  1:2227554/93‑1 (MQ=255)
                           cgtcgtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGATCCGCAAGCTGGGCAATCTCAAACa                                                              <  1:6406804/93‑1 (MQ=255)
                            gtcgtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAg                                                             >  1:3105103/1‑93 (MQ=255)
                             tcgtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGa                                                            <  2:1300679/93‑1 (MQ=255)
                             tcgtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGa                                                            >  1:1463832/1‑93 (MQ=255)
                             tcgtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGa                                                            <  2:5114407/93‑1 (MQ=255)
                             tcgtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGa                                                            >  2:6040834/1‑93 (MQ=255)
                               gtAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAat                                                          >  2:2127448/1‑93 (MQ=255)
                                tAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAata                                                         <  2:1852626/93‑1 (MQ=255)
                                tAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAata                                                         <  2:4010856/93‑1 (MQ=255)
                                  gTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtc                                                       <  1:1984347/93‑1 (MQ=255)
                                  gTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtc                                                       <  1:6629351/93‑1 (MQ=255)
                                   ttttCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtcg                                                      <  2:2399745/93‑1 (MQ=255)
                                   ttttCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtcg                                                      >  2:4854313/1‑93 (MQ=255)
                                    tttCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtcgt                                                     <  1:6011662/93‑1 (MQ=255)
                                    tttCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtcgt                                                     <  2:1118950/93‑1 (MQ=255)
                                      tCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATAtcgtcg                                                   <  1:845422/93‑1 (MQ=255)
                                       caccacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcgg                                                  >  1:6172431/1‑93 (MQ=255)
                                       caccacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcgg                                                  <  2:1516942/93‑1 (MQ=255)
                                        cccacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcgga                                                 <  1:3534551/92‑1 (MQ=255)
                                        accacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcgga                                                 <  1:2858767/93‑1 (MQ=255)
                                         ccacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcggac                                                <  1:5616717/93‑1 (MQ=255)
                                         ccacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcggac                                                <  1:4488133/93‑1 (MQ=255)
                                          cacGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcggacg                                               <  2:3784788/93‑1 (MQ=255)
                                           acGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcggacgg                                              >  1:4081371/1‑93 (MQ=255)
                                           acGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTcggacgg                                              >  2:4289017/1‑93 (MQ=255)
                                             gCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCggacggac                                            <  2:6124834/93‑1 (MQ=255)
                                             gCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCggacggac                                            <  2:6457635/93‑1 (MQ=255)
                                             gCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCggacggac                                            <  2:1641461/93‑1 (MQ=255)
                                             gCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCggacggac                                            <  2:5060871/93‑1 (MQ=255)
                                                 ggCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGAGGGCt                                        >  2:136018/1‑93 (MQ=255)
                                                 ggCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCt                                        >  1:6526879/1‑93 (MQ=255)
                                                  gCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGCCGGCtt                                       <  1:5520196/93‑1 (MQ=255)
                                                  gCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCtt                                       <  2:4445461/93‑1 (MQ=255)
                                                  gCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCtt                                       >  1:2621414/1‑93 (MQ=255)
                                                  gCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCtt                                       >  2:4736498/1‑93 (MQ=255)
                                                  gCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCtt                                       <  2:5135466/93‑1 (MQ=255)
                                                     ttCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTAcc                                    >  2:3445110/1‑93 (MQ=255)
                                                     ttCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTAcc                                    <  2:2741456/93‑1 (MQ=255)
                                                     ttCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTAcc                                    >  2:2334024/1‑93 (MQ=255)
                                                     ttCACGTTCTGACCGAGCAGGTTGACTTCACGCACGATCTGAGCCGCAAACTGGGCAATCTCAAACAGAATATCGTCGGACGGGCGGCTTAcc                                    >  1:1948554/1‑93 (MQ=255)
                                                       cACGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACctc                                  <  1:2078753/93‑1 (MQ=255)
                                                         cGTTCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCtt                                <  1:678063/93‑1 (MQ=255)
                                                           ttCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTca                              >  2:399049/1‑93 (MQ=255)
                                                            tCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTcac                             >  2:4681140/1‑93 (MQ=255)
                                                            tCTGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTcac                             >  1:3752610/1‑93 (MQ=255)
                                                              tGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTcacca                           <  1:1704811/93‑1 (MQ=255)
                                                              tGACCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTcacca                           <  1:5804295/93‑1 (MQ=255)
                                                                aCCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACg                         >  2:1701555/1‑93 (MQ=255)
                                                                aCCGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACg                         >  1:5411840/1‑93 (MQ=255)
                                                                 ccGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACgg                        <  2:4420711/93‑1 (MQ=255)
                                                                  cGAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACggg                       <  1:4650428/93‑1 (MQ=255)
                                                                   gAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGgt                      <  2:503598/93‑1 (MQ=255)
                                                                   gAGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGgt                      >  1:1289279/1‑93 (MQ=255)
                                                                    aGCAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGgtg                     <  2:3889827/93‑1 (MQ=255)
                                                                      cAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACTTCTTCACCACGGGTGTa                   >  1:3394812/1‑93 (MQ=255)
                                                                      cAGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTa                   <  2:5520605/93‑1 (MQ=255)
                                                                       aGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTaa                  >  1:3589967/1‑93 (MQ=255)
                                                                       aGGTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTaa                  <  2:2346423/93‑1 (MQ=255)
                                                                        ggTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAg                 >  2:763355/1‑93 (MQ=255)
                                                                        ggTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAg                 <  1:5185533/93‑1 (MQ=255)
                                                                        ggTTGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAg                 >  1:2467738/1‑93 (MQ=255)
                                                                          ttGACTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGc               <  2:4161325/93‑1 (MQ=255)
                                                                              cTTCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGcacca           >  2:4338541/1‑93 (MQ=255)
                                                                               ttCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGcaccac          <  2:1063676/93‑1 (MQ=255)
                                                                               ttCACGCACGCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGcaccac          >  2:5950023/1‑93 (MQ=255)
                                                                                 cacgcacgCTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGc        >  2:2769070/1‑93 (MQ=255)
                                                                                    gcacgcTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGCAGt     >  1:5004220/1‑93 (MQ=255)
                                                                                     cacgcTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGCAGTa    <  2:1413175/93‑1 (MQ=255)
                                                                                      acgcTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGCAGTAg   >  2:6539512/1‑93 (MQ=255)
                                                                                      acgcTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGACGTAAGGAACCACGCAGTAg   >  2:2217428/1‑93 (MQ=255)
                                                                                       cgcTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGCAGTAgg  <  1:1574236/93‑1 (MQ=255)
                                                                                       cgcTCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGCGTAAGGCACCACGCAGTAgg  >  1:3492943/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCAGATCGGCAAACGATCCGGTGGTGCCGTCGTAGTTTTCACCACGCCAGGCGTTCACGTTCTGACCGAGCAGGTTGACTTCACGCACGCCCTGAGCCGCAAGCTGGGCAATCTCAAACAGAATATCGTCGGACGGACGGCTTACCTCTTCACCACGGGTGTAAGGCACCACGCAGTAGG  >  NC_000913/693515‑693694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: