| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| position | mutation | output | GATK_CNVnator | annotation | gene | description |
| 66,528 | T→C | 100% | 83.3% | Q8R (CAG→CGG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| 66,533 | 3540 bp→27 bp | 100% | [araD]–araB | [araD], araA, araB | ||
| 70,289 | G→T | 100% | 100% | intergenic (‑241/‑98) | araB ← / → araC | L‑ribulokinase/transcriptional regulator for ara operon |
| 78,003 | A→C | 100% | 100% | E128A (GAG→GCG) | yabM → | putative transport protein |
| 502,653 | C→T | 100% | 99.7% | intergenic (‑191/+47) | ybaL ← / ← fsr | putative transport protein/fosmidomycin resistance protein |
| 547,694 | A→G | 100% | 100% | E38E (GAA→GAG) | b4507 → | hypothetical protein |
| 547,835 | +G | 100% | 99.6% | coding (255/261 nt) | b4507 → | hypothetical protein |
| 580,545 | C→T | 51.9% | A163A (GCC→GCT) | nohB → | bacteriophage DNA packaging protein | |
| 580,558 | C→A | 50.3% | L168M (CTG→ATG) | nohB → | bacteriophage DNA packaging protein | |
| 704,236 | T→C | 100% | 99.7% | L357S (TTG→TCG) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
| 1,056,041 | A→G | 100% | 100% | E186E (GAA→GAG) | torT → | TorT |
| 1,302,782 | A→G | 100% | 99.7% | N2S (AAC→AGC) | oppD → | OppD |
| 1,335,418 | A→G | 100% | 100% | S522G (AGC→GGC) | acnA → | aconitate hydrase 1 |
| 1,607,710 | A→G | 100% | 100% | L332P (CTT→CCT) | uxaB ← | altronate oxidoreductase |
| 1,650,355 | T→C | 100% | 99.7% | F274L (TTC→CTC) | b1579 → | putative transposase |
| 1,652,626 | T→C | 100% | 99.7% | E180E (GAA→GAG) | rspA ← | starvation sensing protein |
| 1,718,191 | A→G | 100% | 100% | T98A (ACT→GCT) | slyB → | putative outer membrane protein |
| 1,722,918 | T→A | 100% | 100% | N247Y (AAC→TAC) | b1647 ← | hypothetical protein |
| 1,739,051 | A→G | 100% | 100% | M373V (ATG→GTG) | ydhC → | putative transport protein |
| 1,741,574 | 2 bp→GA | 100% | 100% | coding (94‑95/1374 nt) | ydhE → | putative transport protein |
| 1,812,482 | T→C | 100% | 100% | F198L (TTC→CTC) | katE → | catalase |
| 1,860,370 | T→C | 100% | 100% | E28E (GAA→GAG) | yeaA ← | hypothetical protein |
| 1,949,344 | G→A | ? | 50.4% | Q174Q (CAG→CAA) | yecD → | hypothetical protein |
| 1,949,436 | A→G | 49.9% | L6L (CTA→CTG) | yecE → | hypothetical protein | |
| 1,976,527 | Δ776 bp | 100% | insB5–insA5 | insB5, insA5 | ||
| 1,980,940 | +C | 100% | 100% | coding (1/363 nt) coding (627/627 nt) |
araH ← araH ← |
ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component |
| 2,008,480 | +A | 100% | 100% | coding (637/654 nt) | yedK → | hypothetical protein |
| 2,043,272 | A→G | 100% | 100% | S130G (AGT→GGT) | b1978 → | hypothetical protein |
| 2,072,030 | T→A | 100% | 100% | C824S (TGC→AGC) | b2000 → | outer membrane fluffing protein |
| 2,216,746 | G→C | 100% | 100% | S252S (TCC→TCG) | yehZ ← | putative transport system permease protein |
| 2,429,483 | T→C | 100% | 100% | E65E (GAA→GAG) | dedD ← | putative lipoprotein |
| 2,691,024 | A→T | 100% | 100% | F847Y (TTT→TAT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| 2,729,373 | +C | 100% | 100% | intergenic (‑195/+247) | rrsG ← / ← clpB | 16S ribosomal RNA/ClpB |
| 2,747,389 | Δ1 bp | 100% | 100% | coding (572/591 nt) | b4540 → | hypothetical protein |
| 2,751,091 | G→C | 100% | 100% | A426P (GCT→CCT) | recN → | RecN |
| 2,766,382 | C→G | 100% | 100% | P218A (CCC→GCC) | b2632 → | putative GTP‑binding protein |
| 2,766,423 | G→A | 100% | 100% | R231R (CGG→CGA) | b2632 → | putative GTP‑binding protein |
| 2,766,427 | 2 bp→AC | 100% | 100% | coding (697‑698/864 nt) | b2632 → | putative GTP‑binding protein |
| 2,766,473 | A→G | 100% | 100% | D248G (GAT→GGT) | b2632 → | putative GTP‑binding protein |
| 2,766,475 | A→G | 100% | 100% | T249A (ACC→GCC) | b2632 → | putative GTP‑binding protein |
| 2,781,020 | +G | 100% | 100% | intergenic (‑144/+65) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| 2,781,027 | C→G | 100% | 100% | intergenic (‑151/+58) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| 2,785,180 | Δ1 bp | 100% | 100% | coding (413/495 nt) | b2655 → | hypothetical protein |
| 2,812,859 | Δ1 bp | 100% | 100% | intergenic (‑105/+46) | ygaG ← / ← gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
| 2,820,144 | Δ1 bp | 100% | 98.5% | intergenic (+24/+18) | b4542 → / ← oraA | hypothetical protein/OraA |
| 2,823,915 | A→G | 100% | 100% | K21E (AAG→GAG) | srlA → | PTS system, glucitol/sorbitol‑specific IIC component |
| 2,824,797 | T→C | 100% | 100% | F128S (TTT→TCT) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| 2,825,102 | T→C | 100% | 100% | F230L (TTC→CTC) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| 2,838,044 | +G | 100% | 100% | coding (498/1458 nt) | ascF → | PTS system enzyme IIBC |
| 2,838,055 | Δ1 bp | 100% | 100% | coding (509/1458 nt) | ascF → | PTS system enzyme IIBC |
| 2,842,033 | G→T | 100% | 99.6% | R67R (CGC→CGA) | hycG ← | hydrogenase activity |
| 2,896,819 | +C | 100% | 100% | coding (622/657 nt) | ygcU ← | putative oxidoreductase subunit |
| 3,005,399 | +C | 100% | 100% | coding (1044/1092 nt) | ygeW → | putative carbamoyl transferase |
| 3,025,676 | +C | 100% | 100% | coding (535/570 nt) | ygfQ → | hypothetical protein |
| 3,075,220 | (T)5→6 | 100% | 100% | coding (256/357 nt) | yggP ← | hypothetical protein |
| 3,077,514 | Δ1 bp | 100% | 100% | intergenic (‑165/+149) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| 3,077,640 | +G | 100% | 100% | intergenic (‑291/+23) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| 3,077,905 | A→G | 100% | 100% | S584P (TCG→CCG) | tktA ← | transketolase 1 isozyme |
| 3,078,245 | C→G | 100% | 100% | G470G (GGG→GGC) | tktA ← | transketolase 1 isozyme |
| 3,099,661 | (A)5→6 | 100% | 100% | intergenic (‑19/+164) | yggN ← / ← b2959 | hypothetical protein/hypothetical protein |
| 3,107,469 | +C | 100% | 100% | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
| 3,108,438 | C→A | 100% | 99.5% | noncoding (56/76 nt) | pheV → | tRNA‑Phe |
| 3,115,116 | +C | 100% | 99.7% | coding (2013/2028 nt) | b2974 ← | putative endoglucanase |
| 3,123,585 | +G | 100% | 100% | coding (953/2286 nt) | glcF ← | glycolate oxidase iron‑sulfur subunit |
| 3,130,334 | A→G | 100% | 100% | V30V (GTT→GTC) | b2983 ← | hypothetical protein |
| 3,152,247 | +C | 100% | 100% | intergenic (+10/+29) | yghB → / ← yqhC | hypothetical protein/putative ARAC‑type regulatory protein |
| 3,156,257 | (CCA)2→1 | 100% | 100% | coding (594‑596/930 nt) | yqhG → | hypothetical protein |
| 3,158,202 | +C | 100% | 100% | coding (961/975 nt) | ygiRQ ← | Fe‑S oxidoreductase |
| 3,166,935 | 2 bp→CG | 100% | 100% | coding (312‑313/483 nt) | b3023 ← | hypothetical protein |
| 3,185,776 | T→C | 100% | 100% | F121L (TTC→CTC) | yqiG → | putative membrane protein |
| 3,185,807 | T→C | 100% | 100% | F131S (TTT→TCT) | yqiG → | putative membrane protein |
| 3,221,097 | 2 bp→GC | 100% | 100% | coding (824‑825/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| 3,222,944 | Δ2 bp | 100% | coding (2671‑2672/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit | |
| 3,222,944 | 4 bp→AGCA | 100% | coding (2671‑2674/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit | |
| 3,222,948 | +AC | 100% | coding (2675/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit | |
| 3,224,879 | Δ1 bp | 100% | 99.5% | coding (1005/1434 nt) | ygjI → | putative oxidoreductase |
| 3,224,926 | +C | 100% | 100% | coding (1052/1434 nt) | ygjI → | putative oxidoreductase |
| 3,236,177 | Δ1 bp | 100% | 100% | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
| 3,236,735 | +C | 100% | 100% | coding (514/966 nt) | ygjT → | putative transport protein |
| 3,236,758 | Δ1 bp | 100% | 99.6% | coding (537/966 nt) | ygjT → | putative transport protein |
| 3,237,242 | +C | 100% | 100% | intergenic (+55/‑342) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| 3,237,247 | +C | 100% | 100% | intergenic (+60/‑337) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| 3,253,742 | Δ1 bp | 100% | 99.3% | coding (551/552 nt) | yhaNM ← | hypothetical protein |
| 3,255,594 | Δ1 bp | 100% | 100% | coding (4/1278 nt) | yhaO ← | putative transport system permease protein |
| 3,255,616 | Δ1 bp | 100% | 100% | intergenic (‑19/+312) | yhaO ← / ← yhaP | putative transport system permease protein/putative L‑serine dehydratase |
| 3,256,893 | +C | 100% | 100% | coding (405/423 nt) | yhaQ ← | putative L‑serine dehydratase |
| 3,257,838 | +G | 100% | 100% | coding (2222/2241 nt) | tdcE ← | putative formate acetyltransferase 3 |
| 3,279,197 | A→C | 100% | 100% | R145S (AGA→AGC) | agaA → | putative N‑acetylgalactosamine‑6‑phosphate deacetylase |
| 3,349,263 | (CCGGTG)1→2 | 100% | coding (1398/2331 nt) | arcB ← | aerobic respiration sensor‑response protein | |
| 3,352,254 | 2 bp→GC | 100% | 100% | intergenic (‑569/‑12) | yhcC ← / → gltB | hypothetical protein/glutamate synthase large subunit |
| 3,389,812 | Δ1 bp | 100% | 100% | intergenic (‑149/+4151) | tldD ← / ← cafA | TldD/CafA |
| 3,393,106 | Δ1 bp | 100% | 99.0% | intergenic (‑3443/+857) | tldD ← / ← cafA | TldD/CafA |
| 3,418,840 | +G | 100% | 100% | coding (1070/1089 nt) | b3269 → | putative transport system permease protein |
| 3,421,120 | Δ1 bp | 100% | 98.2% | noncoding (60/121 nt) | rrfF ← | 5S ribosomal RNA |
| 3,429,527 | Δ1 bp | 100% | 100% | coding (40/510 nt) | yrdD ← | putative DNA topoisomerase |
| 3,430,453 | +C | 100% | 100% | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
| 3,500,309 | Δ1 bp | 100% | 100% | coding (333/363 nt) | b3372 → | hypothetical protein |
| 3,509,958 | Δ1 bp | 100% | 100% | intergenic (‑195/+314) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| 3,510,121 | +G | 100% | 100% | intergenic (‑358/+151) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| 3,537,405 | +GC | 100% | 100% | intergenic (+61/‑394) | b3407 → / → feoA | hypothetical protein/ferrous iron transport protein A |
| 3,544,357 | +G | 100% | 100% | coding (163/1314 nt) | gntT → | gluconate permease |
| 3,544,360 | +G | 100% | 100% | coding (166/1314 nt) | gntT → | gluconate permease |
| 3,544,363 | +C | 100% | 100% | coding (169/1314 nt) | gntT → | gluconate permease |
| 3,548,005 | C→T | 100% | 99.4% | G701D (GGT→GAT) | malP ← | maltodextrin phosphorylase |
| 3,554,088 | +C | 100% | 100% | coding (2/624 nt) | yhgKJ ← | RNA phosphage cyclase |
| 3,554,113 | Δ1 bp | 100% | 100% | coding (372/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| 3,554,118 | +C | 100% | 100% | coding (367/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| 3,558,932 | 2 bp→GC | 100% | 100% | coding (153‑154/831 nt) | glpG ← | GlpG |
| 3,573,700 | +C | 100% | 100% | intergenic (+403/+997) | yhgN → / ← gntK | hypothetical protein/gluconokinase 2 |
| 3,575,446 | +G | 100% | 100% | coding (912/942 nt) | gntR ← | GntR |
| 3,627,142 | +G | 100% | 100% | intergenic (‑24/+23) | yhiH ← / ← yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| 3,686,775 | +T | 100% | 100% | intergenic (‑23/+9) | b3530 ← / ← yhjM | putative oxidoreductase subunit/putative endoglucanase |
| 3,703,602 | 2 bp→GC | 100% | 100% | intergenic (‑183/+124) | dppB ← / ← dppA | dipeptide transport system permease protein 1/dipeptide transport protein |
| 3,714,436 | 2 bp→GC | 100% | 100% | coding (261‑262/660 nt) | yiaD → | putative outer membrane protein |
| 3,734,264 | 2 bp→GC | 100% | 100% | coding (542‑543/825 nt) | bax ← | putative ATP‑binding protein |
| 3,737,956 | 2 bp→CG | 100% | 100% | coding (623‑624/1254 nt) | avtA → | alanine‑alpha‑ketoisovalerate transaminase |
| 3,743,603 | Δ1 bp | 100% | 100% | coding (1171/1275 nt) | yiaN → | putative membrane protein |
| 3,754,310 | C→A | 100% | 100% | R382M (AGG→ATG) | yiaY ← | putative oxidoreductase |
| 3,754,317 | +GCG | 100% | 100% | coding (1138/1149 nt) | yiaY ← | putative oxidoreductase |
| 3,765,203 | A→T | 100% | 100% | Q119L (CAG→CTG) | yibJ → | hypothetical protein |
| 3,765,234 | G→A | 100% | 98.7% | G129G (GGG→GGA) | yibJ → | hypothetical protein |
| 3,870,631 | Δ1 bp | 100% | 100% | coding (610/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| 3,870,765 | +G | 100% | 100% | coding (476/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| 3,870,876 | Δ1 bp | 100% | 100% | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| 3,872,450 | +G | 100% | 100% | coding (338/387 nt) | yidW ← | regulator protein for dgo operon |
| 3,873,627 | Δ1 bp | 100% | 100% | coding (506/672 nt) | yidX → | putative replicase |
| 3,876,595 | G→C | 100% | 100% | P385A (CCG→GCG) | gyrB ← | DNA gyrase subunit B |
| 3,881,483 | Δ1 bp | 100% | 100% | intergenic (‑126/‑482) | dnaA ← / → rpmH | DnaA/50S ribosomal subunit protein L34 |
| 3,896,324 | +G | 100% | 100% | coding (698/711 nt) | b3718 ← | putative isomerase |
| 3,927,062 | +G | 100% | 100% | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
| 3,930,457 | Δ1 bp | 100% | 100% | coding (1515/1560 nt) | kup → | low affinity potassium transport system |
| 3,930,568 | +G | 100% | 100% | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| 3,930,677 | +G | 100% | 100% | intergenic (+175/‑264) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| 3,938,587 | +TGC | 100% | 100% | coding (220/546 nt) | yiePs ← | hypothetical protein |
| 3,941,734 | Δ1 bp | 100% | noncoding (409/2906 nt) | rrlC → | 23S ribosomal RNA | |
| 3,944,244 | C→A | 100% | intergenic (+13/‑80) | rrlC → / → rrfC | 23S ribosomal RNA/5S ribosomal RNA | |
| 3,944,676 | 2 bp→GC | 100% | 100% | intergenic (+20/+75) | trpT → / ← yifDA | tRNA‑Trp/transcription regulator |
| 3,945,351 | +C | 100% | 100% | coding (1/600 nt) coding (240/240 nt) |
yifDA ← yifDA ← |
transcription regulator transcription regulator |
| 3,950,557 | 2 bp→GC | 100% | 100% | coding (451‑452/930 nt) | ilvE → | branched‑chain amino‑acid aminotransferase |
| 3,951,166 | +C | 100% | 100% | coding (35/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| 3,951,168 | +G | 100% | 100% | coding (37/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| 3,957,092 | +CC | 100% | 100% | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| 3,957,124 | +G | 100% | 99.4% | intergenic (+58/+26) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| 3,957,547 | 2 bp→GG | 100% | intergenic (‑116/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase | |
| 3,957,548 | 1 bp→GG | 100% | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase | |
| 3,957,551 | +T | 100% | 100% | intergenic (‑120/‑741) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| 3,957,560 | +C | 100% | 99.4% | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| 3,958,877 | 2 bp→CG | 100% | 100% | coding (586‑587/2022 nt) | rep → | rep helicase |
| 3,960,578 | 2 bp→CG | 100% | 100% | coding (1266‑1267/1485 nt) | gppA ← | guanosine pentaphosphatase |
| 3,961,588 | C→G | 100% | 100% | R86T (AGG→ACG) | gppA ← | guanosine pentaphosphatase |
| 3,968,317 | +CGT | 100% | 100% | coding (612/1170 nt) | wecB → | UDP‑N‑acetyl glucosamine ‑2‑epimerase |
| 3,969,103 | 2 bp→GC | 100% | 100% | coding (232‑233/1263 nt) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| 3,971,075 | 2 bp→GC | 100% | 100% | coding (942‑943/1068 nt) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| 3,972,637 | 2 bp→GC | 100% | 100% | coding (430‑431/546 nt) | wecD → | hypothetical protein |
| 3,975,313 | Δ1 bp | 100% | 100% | intergenic (+173/‑901) | wzxE → / → wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
| 3,978,702 | C→T | 100% | 99.7% | S68F (TCC→TTC) | yifK → | putative amino acid/amine transport protein |
| 3,979,535 | +G | 100% | 100% | coding (1036/1386 nt) | yifK → | putative amino acid/amine transport protein |
| 3,979,546 | Δ1 bp | 100% | 100% | coding (1047/1386 nt) | yifK → | putative amino acid/amine transport protein |
| 3,980,918 | 2 bp→CG | 100% | 100% | coding (348‑349/1236 nt) | aslB → | putative arylsulfatase regulator |
| 3,987,586 | 2 bp→GC | 100% | 100% | coding (814‑815/963 nt) | hemC ← | porphobilinogen deaminase |
| 3,987,822 | 2 bp→CG | 100% | 100% | coding (578‑579/963 nt) | hemC ← | porphobilinogen deaminase |
| 3,998,290 | +G | 100% | 100% | coding (379/486 nt) | b4566 ← | hypothetical protein |
| 4,001,421 | 2 bp→GC | 100% | 100% | coding (381‑382/903 nt) | rarD ← | hypothetical protein |
| 4,001,486 | 2 bp→GC | 100% | 100% | coding (316‑317/903 nt) | rarD ← | hypothetical protein |
| 4,001,717 | +C | 100% | 100% | coding (86/903 nt) | rarD ← | hypothetical protein |
| 4,004,979 | +G | 100% | 100% | coding (1511/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| 4,004,984 | +CG | 100% | 100% | coding (1516/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| 4,005,601 | +C | 100% | 100% | coding (237/282 nt) | b4568 → | hypothetical protein |
| 4,006,483 | +C | 100% | 100% | coding (183/207 nt) | b4554 ← | hypothetical protein |
| 4,007,718 | 2 bp→CG | 100% | 100% | coding (943‑944/1023 nt) | pldB → | lysophospholipase L(2) |
| 4,007,907 | +GG | 100% | 100% | intergenic (+109/‑11) | pldB → / → b4555 | lysophospholipase L(2)/hypothetical protein |
| 4,008,375 | +A | 100% | 100% | coding (458/516 nt) | b4555 → | hypothetical protein |
| 4,008,391 | +C | 100% | 100% | coding (474/516 nt) | b4555 → | hypothetical protein |
| 4,008,393 | C→G | 100% | 100% | A159G (GCT→GGT) | b4555 → | hypothetical protein |
| 4,008,398 | 5 bp→5 bp | 100% | coding (481‑485/516 nt) | b4555 → | hypothetical protein | |
| 4,008,400 | +GAAA | 100% | coding (483/516 nt) | b4555 → | hypothetical protein | |
| 4,008,404 | +G | 100% | coding (487/516 nt) | b4555 → | hypothetical protein | |
| 4,008,411 | +C | 100% | 100% | coding (494/516 nt) | b4555 → | hypothetical protein |
| 4,008,421 | +T | 100% | 100% | coding (504/516 nt) | b4555 → | hypothetical protein |
| 4,008,429 | +TG | 100% | 100% | coding (512/516 nt) | b4555 → | hypothetical protein |
| 4,008,469 | +G | 100% | 100% | intergenic (+36/‑197) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,008,473 | +G | 100% | 100% | intergenic (+40/‑193) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,008,491 | 2 bp→CG | 100% | 100% | intergenic (+58/‑174) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,008,525 | +G | 100% | 100% | intergenic (+92/‑141) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,013,176 | C→G | 100% | G182R (GGA→CGA) | ysgA ← | hypothetical protein | |
| 4,013,176 | 2 bp→GC | 100% | coding (543‑544/999 nt) | ysgA ← | hypothetical protein | |
| 4,013,177 | +C | 100% | coding (543/999 nt) | ysgA ← | hypothetical protein | |
| 4,013,717 | +G | 100% | 100% | coding (3/999 nt) | ysgA ← | hypothetical protein |
| 4,013,772 | +C | 100% | 100% | intergenic (‑53/‑246) | ysgA ← / → udp | hypothetical protein/uridine phosphorylase |
| 4,016,743 | C→T | 100% | 99.6% | P101L (CCC→CTC) | ubiE → | UbiE |
| 4,019,857 | C→T | 100% | 100% | intergenic (+56/‑28) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| 4,019,860 | Δ2 bp | 100% | 100% | intergenic (+59/‑24) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| 4,021,684 | Δ1 bp | 100% | 100% | coding (542/609 nt)|coding (1/243 nt) | b4556 → tatD → |
hypothetical protein Mg‑dependent DNase |
| 4,026,252 | 2 bp→GC | 100% | 100% | coding (110‑111/1164 nt) | fadA ← | thiolase I |
| 4,031,984 | +C | 100% | 100% | coding (1250/1299 nt) | trkH → | TrkH |
| 4,039,960 | Δ1 bp | 100% | 100% | intergenic (+42/‑36) | yihD → / → yihE | hypothetical protein/hypothetical protein |
| 4,041,654 | G→A | 100% | 100% | intergenic (+29/‑125) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| 4,041,671 | (T)6→7 | 100% | 100% | intergenic (+46/‑108) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| 4,051,144 | Δ1 bp | 100% | 100% | intergenic (+146/+305) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| 4,051,170 | +C | 100% | 100% | intergenic (+172/+279) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| 4,057,759 | +C | 100% | 100% | coding (1773/1776 nt) | yihK → | putative GTP‑binding factor |
| 4,061,961 | Δ1 bp | 100% | 100% | coding (1386/1458 nt) | b3876 ← | putative permease |
| 4,085,675 | Δ1 bp | 100% | 100% | intergenic (+38/+13) | yiiG → / ← frvR | hypothetical protein/putative frv operon regulatory protein |
| 4,091,351 | C→T | 100% | 99.6% | G168D (GGC→GAC) | rhaD ← | rhamnulose‑phosphate aldolase |
| 4,091,572 | 3461 bp→29 bp | 100% | [rhaD]–rhaB | [rhaD], rhaA, rhaB | ||
| 4,103,519 | +T | 100% | 100% | intergenic (‑268/‑530) | cpxR ← / → yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| 4,139,669 | +C | 100% | 100% | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
| 4,158,827 | G→T | 100% | 99.6% | G61V (GGC→GTC) | yijC → | hypothetical protein |
| 4,161,702 | C→G | 100% | 100% | A162G (GCA→GGA) | btuB → | BtuB |
| 4,175,949 | +G | 100% | 99.6% | intergenic (+82/‑76) | nusG → / → rplK | NusG/50S ribosomal subunit protein L11 |
| 4,194,577 | 2 bp→GC | 100% | 100% | coding (97‑98/774 nt) | yjaD → | hypothetical protein |
| 4,293,960 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate‑aspartate symport protein/hypothetical protein | |
| 4,311,496 | +C | 100% | 100% | coding (301/408 nt) | phnQ ← | hypothetical protein |
| 4,316,203 | T→A | 100% | 100% | Q47L (CAG→CTG) | phnK ← | ATP‑binding component of phosphonate transport |
| 4,435,684 | +A | 100% | 100% | coding (400/501 nt) | ytfI → | hypothetical protein |
| 4,448,541 | +C | 100% | intergenic (+46/‑92) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR | |
| 4,448,541 | 2 bp→CC | 100% | intergenic (+46/‑91) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR | |
| 4,448,543 | +C | 100% | intergenic (+48/‑90) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR | |
| 4,449,738 | +G | 100% | 100% | coding (1106/1254 nt) | ytfR → | YtfR |
| 4,472,408 | A→G | 100% | 100% | intergenic (+117/‑28) | b4251 → / → b4252 | hypothetical protein/hypothetical protein |
| 4,474,826 | +A | 100% | 100% | intergenic (+1/+44) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,848 | +GTATTT | 100% | intergenic (+23/+22) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 | |
| 4,474,849 | 20 bp→30 bp | 100% | intergenic (+24/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 | |
| 4,474,850 | +CG | ? | 100% | intergenic (+25/+20) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,857 | +T | ? | 100% | intergenic (+32/+13) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,866 | Δ1 bp | ? | 100% | intergenic (+41/+4) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,868 | +CA | 100% | intergenic (+43/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 | |
| 4,477,041 | Δ1 bp | 100% | 100% | intergenic (‑151/‑269) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| 4,477,068 | +C | 100% | 100% | intergenic (‑178/‑242) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| 4,477,281 | Δ1 bp | 100% | 100% | intergenic (‑391/‑29) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| 4,477,321 | Δ1 bp | 100% | 100% | coding (12/1182 nt) | yjgN → | hypothetical protein |
| 4,478,503 | (A)7→6 | 100% | 100% | intergenic (+12/+47) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| 4,478,511 | Δ1 bp | 100% | 100% | intergenic (+20/+39) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| 4,478,527 | Δ1 bp | 100% | 99.6% | intergenic (+36/+23) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| 4,505,001 | 1,200 bp x 2 | 100% | duplication | [b4283]–[b4562] | [b4283], tra83, [b4562] | |
| 4,542,643 | Δ1 bp | 100% | 96.9% | intergenic (+46/‑22) | b4316 → / → fimD | Pil/FimD |
| 4,544,170 | T→C | 100% | 99.2% | I502I (ATT→ATC) | fimD → | FimD |
| 4,573,190 | Δ1 bp | 100% | 98.8% | coding (1487/1542 nt) | yjiU → | hypothetical protein |
| 4,583,050 | G→A | 100% | 99.3% | Q446* (CAA→TAA) | hsdR ← | endonuclease R |
| 4,589,201 | 1,700 bp x 2 | 100% | duplication | tsr | tsr | |
| 4,593,254 | 2 bp→GC | 100% | 100% | coding (59‑60/807 nt) | yjjM ← | hypothetical protein |
| 4,593,336 | +G | 100% | 100% | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
| 4,600,078 | C→T | 100% | 99.7% | W135* (TGG→TAG) | yjjP ← | putative structural protein |
| 4,608,595 | 2 bp→GC | 100% | 100% | intergenic (+23/‑369) | prfC → / → osmY | peptide chain release factor RF‑3/OsmY |
| 4,614,238 | G→T | 100% | 99.6% | L133I (CTA→ATA) | yjjI ← | hypothetical protein |