| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| position | mutation | output | GATK_CNVnator | annotation | gene | description |
| 2,054 | A→G | 100% | 99.6% | H573R (CAC→CGC) | thrA → | aspartokinase I |
| 34,120 | (T)9→8 | 100% | 98.1% | coding (146/180 nt) | yaaV ← | hypothetical protein |
| 39,749 | T→C | 100% | 99.2% | D213G (GAC→GGC) | caiA ← | putative carnitine operon oxidoreductase |
| 41,228 | A→C | 100% | 98.7% | I235S (ATC→AGC) | caiT ← | putative carnitine transporter |
| 51,728 | C→T | 54.2% | V235I (GTC→ATC) | ksgA ← | S‑adenosylmethionine‑6‑N',N'‑adenosyl (rRNA) dimethyltransferase | |
| 66,528 | T→C | 100% | Q8R (CAG→CGG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase | |
| 66,533 | 3540 bp→27 bp | 100% | [araD]–araB | [araD], araA, araB | ||
| 70,289 | G→T | 100% | 100% | intergenic (‑241/‑98) | araB ← / → araC | L‑ribulokinase/transcriptional regulator for ara operon |
| 78,003 | A→C | 100% | 100% | E128A (GAG→GCG) | yabM → | putative transport protein |
| 93,625 | C→T | 100% | 99.6% | P154S (CCG→TCG) | murE → | meso‑diaminopimelate‑adding enzyme |
| 97,700 | A→G | 100% | 99.6% | N205S (AAC→AGC) | murD → | UDP‑N‑acetylmuramoylalanine‑D‑glutamate ligase |
| 104,752 | T→C | 100% | 99.5% | I257I (ATT→ATC) | ftsA → | ATP‑binding cell division protein |
| 120,509 | A→G | 100% | 98.4% | V348A (GTA→GCA) | aroP ← | aromatic amino acid transport protein |
| 121,408 | A→G | 100% | 99.1% | I48I (ATT→ATC) | aroP ← | aromatic amino acid transport protein |
| 125,440 | C→T | 100% | 99.1% | F808F (TTC→TTT) | aceE → | pyruvate dehydrogenase |
| 126,053 | T→C | 100% | 99.1% | V120A (GTG→GCG) | aceF → | pyruvate dehydrogenase |
| 129,639 | A→G | 100% | 99.2% | V541A (GTG→GCG) | yacH ← | putative membrane protein |
| 130,705 | C→T | 100% | 97.5% | G186S (GGC→AGC) | yacH ← | putative membrane protein |
| 140,097 | A→G | 100% | 100% | W377R (TGG→CGG) | gcd ← | glucose dehydrogenase |
| 144,667 | C→T | 100% | 99.5% | R31W (CGG→TGG) | yadI → | putative PTS enzyme IIA component |
| 159,448 | A→G | 100% | 98.1% | V222A (GTG→GCG) | yadB ← | putative tRNA synthetase |
| 163,255 | T→C | 100% | 99.5% | V399A (GTG→GCG) | hrpB → | ATP‑dependent helicase |
| 170,527 | T→C | 100% | 98.3% | G250G (GGT→GGC) | fhuC → | ATP‑binding component of hydroxymate‑dependent iron transport |
| 172,865 | C→T | 50.3% | A468A (GCC→GCT) | fhuB → | FhuB | |
| 176,432 | A→G | 100% | 98.1% | K442K (AAA→AAG) | yadQ → | putative channel transporter |
| 187,433 | A→G | 100% | 99.5% | H406H (CAT→CAC) | glnD ← | protein PII |
| 188,442 | T→C | 100% | 98.0% | Q70R (CAG→CGG) | glnD ← | protein PII |
| 200,335 | A→G | 100% | 98.7% | Q803R (CAG→CGG) | yaeT → | hypothetical protein |
| 207,737 | C→T | 100% | 99.5% | T871I (ACC→ATC) | dnaE → | DNA polymerase III alpha subunit |
| 258,944 | A→G | ? | 56.7% | D127D (GAT→GAC) | phoE ← | outer membrane pore protein E |
| 260,837 | A→G | 100% | 99.5% | A37A (GCA→GCG) | proA → | gamma‑glutamylphosphate reductase |
| 261,908 | T→C | 100% | 99.1% | R394R (CGT→CGC) | proA → | gamma‑glutamylphosphate reductase |
| 282,839 | G→A | 100% | 99.3% | A139T (GCG→ACG) | yagF → | putative dehydratase |
| 286,179 | A→G | 100% | 100% | D56G (GAC→GGC) | yagH → | putative beta‑xylosidase |
| 300,714 | A→G | 100% | 98.1% | L133P (CTG→CCG) | yagS ← | hypothetical protein |
| 306,757 | A→G | 67.0% | R600R (CGT→CGC) | yagX ← | hypothetical protein | |
| 308,315 | A→G | 100% | 100% | L81P (CTG→CCG) | yagX ← | hypothetical protein |
| 312,219 | T→C | 59.3% | intergenic (‑218/‑1362) | ykgM ← / → eaeH | putative ribosomal protein/attaching and effacing protein | |
| 323,547 | C→T | 100% | 99.6% | A189V (GCC→GTC) | ykgG → | putative transporter |
| 337,988 | C→T | 100% | 100% | P147L (CCG→CTG) | yahG → | hypothetical protein |
| 342,435 | A→G | 100% | 99.4% | M110V (ATG→GTG) | yahK → | putative oxidoreductase |
| 373,904 | A→G | 100% | 98.1% | R271R (CGA→CGG) | mhpE → | 4‑hydroxy‑2‑ketovalerate aldolase |
| 375,923 | A→G | 100% | 98.9% | intergenic (+29/‑73) | mhpT → / → yaiL | putative transport protein/nucleoprotein/polynucleotide‑associated enzyme |
| 405,386 | C→T | 100% | 99.5% | R173R (CGC→CGT) | yaiI → | hypothetical protein |
| 406,582 | T→C | 50.5% | intergenic (+188/‑70) | yaiA → / → aroM | hypothetical protein/aroM | |
| 418,134 | T→C | 100% | 98.3% | V341A (GTA→GCA) | phoR → | positive and negative sensor protein for pho regulon |
| 419,777 | C→T | 100% | 98.4% | L321L (CTC→CTT) | brnQ → | branched chain amino acid transport system II carrier protein |
| 421,409 | T→C | 54.3% | G400G (GGT→GGC) | proY → | proline permease transport protein | |
| 431,523 | T→C | 100% | 99.6% | intergenic (‑286/+13) | tsx ← / ← yajI | Tsx/hypothetical protein |
| 439,636 | T→C | 59.4% | G230G (GGA→GGG) | ispA ← | geranyltranstransferase | |
| 476,113 | A→G | 63.4% | Y73C (TAC→TGC) | ybaA → | hypothetical protein | |
| 484,670 | A→G | 56.3% | G58G (GGT→GGC) | acrA ← | acridine efflux pump | |
| 484,839 | T→G | 100% | 99.5% | N2T (AAC→ACC) | acrA ← | acridine efflux pump |
| 502,653 | C→T | 100% | 100% | intergenic (‑191/+47) | ybaL ← / ← fsr | putative transport protein/fosmidomycin resistance protein |
| 513,506 | A→G | 100% | 98.9% | E97G (GAG→GGG) | ybbI → | putative transcriptional regulator |
| 519,169 | A→G | 50.6% | G71G (GGA→GGG) | ybbA → | putative ATP‑binding component of a transport system | |
| 535,281 | A→G | 100% | 99.5% | E116E (GAA→GAG) | gip → | glyoxylate‑induced protein |
| 540,420 | A→G | 100% | 98.2% | Y211C (TAC→TGC) | ybbY → | putative transport |
| 547,694 | A→G | 100% | 100% | E38E (GAA→GAG) | b4507 → | hypothetical protein |
| 547,835 | +G | 100% | 100% | coding (255/261 nt) | b4507 → | hypothetical protein |
| 559,119 | T→C | ? | 52.4% | V67A (GTG→GCG) | sfmD → | putative outer membrane protein |
| 561,757 | G→A | 55.6% | V65M (GTG→ATG) | sfmH → | involved in fimbrial asembly | |
| 575,662 | A→G | 100% | 94.6% | T149T (ACT→ACC) | nmpC ← | outer membrane porin protein |
| 588,625 | A→G | 100% | 98.5% | V518A (GTA→GCA) | nfrA ← | NfrA |
| 601,951 | A→G | ? | 51.4% | Y257C (TAC→TGC) | pheP → | phenylalanine‑specific transport system |
| 625,013 | (C)5→4 | 100% | 97.6% | coding (906/1176 nt) | entC → | isochorismate hydroxymutase 2 |
| 643,426 | A→G | 100% | 99.0% | G267G (GGT→GGC) | rna ← | RNase I |
| 654,248 | A→G | 100% | 98.9% | M315T (ATG→ACG) | dcuC ← | DcuC |
| 660,762 | A→G | 100% | 100% | intergenic (‑161/+98) | ybeF ← / ← lipB | putative transcriptional regulator LYSR‑type/LipB |
| 698,096 | A→G | 100% | 99.5% | V102A (GTG→GCG) | asnB ← | asparagine synthetase B |
| 704,236 | T→C | 100% | 100% | L357S (TTG→TCG) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
| 727,030 | A→G | 100% | 98.8% | L309P (CTG→CCG) | kdpA ← | KdpA |
| 742,023 | A→G | 100% | 100% | intergenic (‑244/‑27) | ybgH ← / → ybgI | putative transport protein/hypothetical protein |
| 747,172 | A→G | 100% | 99.4% | V345A (GTG→GCG) | ybgO ← | hypothetical protein |
| 767,322 | T→C | 100% | 98.8% | L41P (CTG→CCG) | ybgG → | putative sugar hydrolase |
| 768,447 | A→G | 100% | 100% | D416G (GAC→GGC) | ybgG → | putative sugar hydrolase |
| 782,054 | T→C | 100% | 98.6% | A249A (GCT→GCC) | nadA → | quinolinate synthetase A protein |
| 783,271 | A→G | 63.7% | V259A (GTG→GCG) | ybgR ← | putative transport system permease protein | |
| 789,507 | T→C | 100% | 100% | D249G (GAC→GGC) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| 800,245 | T→C | ? | 52.2% | D88D (GAT→GAC) | ybhH → | hypothetical protein |
| 842,873 | A→G | 52.9% | W611R (TGG→CGG) | ybiO ← | putative transport protein | |
| 854,026 | T→C | 100% | 100% | intergenic (+38/+21) | ybiR → / ← ybiS | hypothetical protein/hypothetical protein |
| 860,895 | G→A | 100% | 100% | A312V (GCC→GTC) | ybiW ← | putative formate acetyltransferase |
| 865,458 | C→T | 54.1% | V44I (GTC→ATC) | moeA ← | MoeA | |
| 907,912 | T→C | 100% | 97.8% | P202P (CCA→CCG) | ybjU ← | putative arylsulfatase |
| 908,998 | A→G | 100% | 99.4% | R425R (CGT→CGC) | poxB ← | pyruvate oxidase |
| 926,255 | A→G | 100% | 98.5% | V134A (GTC→GCC) | aat ← | leucyl, phenylalanyl‑tRNA‑protein transferase |
| 964,158 | T→C | 100% | 97.6% | L206L (TTA→CTA) | ycaI → | hypothetical protein |
| 966,971 | A→G | 100% | 100% | G376G (GGA→GGG) | msbA → | ATP‑binding transport protein |
| 967,279 | T→C | 100% | 100% | V479A (GTG→GCG) | msbA → | ATP‑binding transport protein |
| 971,671 | T→C | 100% | 97.8% | F233L (TTC→CTC) | b0919 → | hypothetical protein |
| 976,048 | A→G | 100% | 100% | Q167R (CAG→CGG) | mukB → | MukB |
| 981,275 | (G)5→6 | 100% | 99.1% | coding (1006/1848 nt) | ycbB → | putative amidase |
| 997,353 | T→C | 100% | 99.3% | V91A (GTA→GCA) | ycbQ → | putative fimbrial‑like protein |
| 998,008 | A→G | 100% | 99.4% | Y99C (TAC→TGC) | ycbR → | putative chaperone |
| 998,257 | A→G | 100% | 98.6% | D182G (GAC→GGC) | ycbR → | putative chaperone |
| 1,015,360 | C→T | 100% | 97.0% | V112M (GTG→ATG) | fabA ← | beta‑hydroxydecanoyl thioester dehydrase |
| 1,018,581 | C→T | 100% | 99.1% | P232P (CCG→CCA) | ompA ← | outer membrane protein 3a |
| 1,027,127 | T→C | 100% | 99.3% | intergenic (‑131/‑42) | b0964 ← / → b0965 | hypothetical protein/hypothetical protein |
| 1,052,306 | G→A | 100% | 99.2% | P94S (CCG→TCG) | yccM ← | hypothetical protein |
| 1,056,041 | A→G | 100% | 100% | E186E (GAA→GAG) | torT → | TorT |
| 1,057,591 | A→G | 100% | 99.3% | E95E (GAA→GAG) | torC → | trimethylamine N‑oxide reductase, cytochrome c‑type subunit |
| 1,063,438 | T→C | 100% | 97.8% | D60D (GAT→GAC) | yccE → | hypothetical protein |
| 1,067,720 | +C | 100% | 98.2% | intergenic (+243/+14) | b4516 → / ← ycdG | hypothetical protein/putative transport protein |
| 1,070,080 | T→C | 100% | 99.0% | L33L (TTA→TTG) | b1008 ← | hypothetical protein |
| 1,078,438 | T→C | 100% | 100% | intergenic (‑333/‑90) | putA ← / → putP | proline dehydrogenase/major sodium/proline symporter |
| 1,097,622 | T→C | 100% | 98.5% | W185R (TGG→CGG) | ycdW → | putative dehydrogenase |
| 1,097,684 | G→A | 100% | 98.8% | R205R (CGG→CGA) | ycdW → | putative dehydrogenase |
| 1,115,717 | A→G | 100% | 97.8% | V30A (GTG→GCG) | htrB ← | heat shock protein |
| 1,125,943 | A→G | 64.3% | L188L (TTA→TTG) | yceH → | hypothetical protein | |
| 1,132,866 | A→G | 100% | 98.5% | N357S (AAC→AGC) | flgE → | hook protein |
| 1,135,559 | T→C | 100% | 100% | R22R (CGT→CGC) | flgI → | FlgI |
| 1,142,316 | A→G | 100% | 100% | R425R (CGT→CGC) | rne ← | RNase E |
| 1,151,521 | A→G | 100% | 99.1% | T120T (ACA→ACG) | fabF → | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| 1,158,530 | T→C | 100% | 100% | intergenic (+5/+55) | ptsG → / ← fhuE | PTS system, glucose‑specific IIBC component/outer membrane receptor for ferric iron uptake |
| 1,161,046 | A→G | 100% | 99.3% | intergenic (‑272/‑44) | fhuE ← / → ycfF | outer membrane receptor for ferric iron uptake/hypothetical protein |
| 1,198,459 | A→G | 64.7% | E181G (GAG→GGG) | lit → | Lit | |
| 1,230,757 | A→G | 100% | 97.2% | T117A (ACT→GCT) | umuC → | UmuC |
| 1,233,954 | A→G | 100% | 97.7% | intergenic (‑14/‑207) | nhaB ← / → fadR | Na+/H+ antiporter, pH independent/FadR |
| 1,235,811 | A→G | 51.5% | R218R (CGT→CGC) | ycgB ← | putative sporulation protein | |
| 1,254,408 | A→G | 100% | 99.2% | S256S (AGT→AGC) | b1202 ← | putative adhesion and penetration protein |
| 1,256,863 | A→G | 100% | 99.1% | V58A (GTA→GCA) | ychF ← | putative GTP‑binding protein |
| 1,302,782 | A→G | 100% | 100% | N2S (AAC→AGC) | oppD → | OppD |
| 1,335,418 | A→G | 100% | 100% | S522G (AGC→GGC) | acnA → | aconitate hydrase 1 |
| 1,346,591 | G→A | 100% | 100% | R116C (CGT→TGT) | rnb ← | RNase II |
| 1,368,442 | C→T | 100% | 97.8% | T68I (ACA→ATA) | ycjM → | putative polysaccharide hydrolase |
| 1,373,005 | A→G | 100% | 98.9% | T7A (ACA→GCA) | ycjQ → | putative oxidoreductase |
| 1,418,817 | (G)6→7 | 100% | 100% | coding (110/423 nt) | ydaT → | hypothetical protein |
| 1,438,660 | T→C | 58.9% | D50G (GAC→GGC) | ydbK ← | putative oxidoreductase Fe‑S subunit | |
| 1,440,689 | A→G | 100% | 99.0% | V60A (GTG→GCG) | ldhA ← | fermentative D‑lactate dehydrogenase, NAD‑dependent |
| 1,442,877 | A→G | 100% | 96.7% | A601A (GCA→GCG) | ydbH → | hypothetical protein |
| 1,444,274 | T→C | 100% | 99.2% | intergenic (+44/+128) | ydbL → / ← feaR | hypothetical protein/FeaR |
| 1,483,110 | A→G | 100% | 97.5% | T676A (ACC→GCC) | hrpA → | helicase, ATP‑dependent |
| 1,499,704 | G→A | 100% | 99.1% | G40D (GGC→GAC) | tehB → | TehB |
| 1,499,997 | A→G | 49.5% | T138A (ACC→GCC) | tehB → | TehB | |
| 1,520,862 | T→C | ? | 54.3% | V76V (GTA→GTG) | b1451 ← | putative outer membrane receptor for iron transport |
| 1,523,361 | A→G | 60.0% | F215S (TTC→TCC) | ansP ← | L‑asparagine permease | |
| 1,537,704 | A→G | 100% | 100% | W971R (TGG→CGG) | narZ ← | cryptic nitrate reductase 2 alpha subunit |
| 1,542,294 | A→G | 100% | 98.4% | intergenic (‑210/+114) | narU ← / ← b1470 | nitrite extrusion protein 2/hypothetical protein |
| 1,548,806 | T→C | 100% | 99.0% | C108R (TGC→CGC) | fdnH → | formate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit |
| 1,572,242 | T→C | 100% | 97.7% | I329V (ATT→GTT) | pqqL ← | putative peptidase |
| 1,598,660 | T→C | 58.4% | A202A (GCA→GCG) | ydeW ← | putative transcriptional regulator, sorC family | |
| 1,599,629 | T→C | 100% | 95.7% | V39A (GTC→GCC) | b1513 → | putative ATP‑binding component of a transport system |
| 1,601,638 | T→C | 100% | 97.6% | L199P (CTG→CCG) | ydeY → | putative transport system permease protein |
| 1,607,710 | A→G | 100% | 100% | L332P (CTT→CCT) | uxaB ← | altronate oxidoreductase |
| 1,625,295 | T→C | 100% | 99.0% | Q37R (CAG→CGG) | dcp ← | dipeptidyl carboxypeptidase II |
| 1,638,567 | T→C | 100% | 100% | T15A (ACA→GCA) | b1556 ← | hypothetical protein |
| 1,641,525 | T→C | 100% | 96.1% | T281T (ACA→ACG) | b1560 ← | hypothetical protein |
| 1,650,355 | T→C | 100% | 100% | F274L (TTC→CTC) | b1579 → | putative transposase |
| 1,652,626 | T→C | 100% | 100% | E180E (GAA→GAG) | rspA ← | starvation sensing protein |
| 1,664,234 | C→T | 100% | 98.9% | A319V (GCC→GTC) | b1592 → | putative chloride channel |
| 1,691,459 | T→C | 100% | 99.2% | T277A (ACT→GCT) | uidB ← | glucuronide permease |
| 1,712,001 | T→C | 100% | 98.9% | G403G (GGT→GGC) | ydgR → | putative transport protein |
| 1,717,544 | T→C | 100% | 98.9% | H28R (CAC→CGC) | b1640 ← | hypothetical protein |
| 1,718,191 | A→G | 100% | 100% | T98A (ACT→GCT) | slyB → | putative outer membrane protein |
| 1,722,918 | T→A | 100% | 100% | N247Y (AAC→TAC) | b1647 ← | hypothetical protein |
| 1,733,771 | A→G | 49.4% | T124A (ACC→GCC) | sodB → | superoxide dismutase, iron | |
| 1,739,051 | A→G | 100% | 100% | M373V (ATG→GTG) | ydhC → | putative transport protein |
| 1,741,574 | 2 bp→GA | 100% | 100% | coding (94‑95/1374 nt) | ydhE → | putative transport protein |
| 1,786,907 | A→G | ? | 58.1% | Q150R (CAG→CGG) | aroH → | 3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase |
| 1,795,093 | A→G | 59.8% | G292G (GGT→GGC) | pheT ← | phenylalanine tRNA synthetase beta‑subunit | |
| 1,802,307 | A→G | 100% | 98.4% | S397G (AGC→GGC) | b1721m → | ankyrin repeat protein |
| 1,804,677 | T→C | 100% | 99.1% | V96A (GTA→GCA) | pfkB → | 6‑phosphofructokinase II |
| 1,812,482 | T→C | 100% | 100% | F198L (TTC→CTC) | katE → | catalase |
| 1,843,109 | C→T | 57.8% | A626T (GCT→ACT) | topB ← | DNA topoisomerase III | |
| 1,860,370 | T→C | 100% | 100% | E28E (GAA→GAG) | yeaA ← | hypothetical protein |
| 1,866,277 | T→C | 100% | 99.2% | V449A (GTC→GCC) | yeaG → | hypothetical protein |
| 1,879,281 | T→C | 100% | 96.0% | T185A (ACC→GCC) | yeaT ← | putative transcriptional regulator LYSR‑type |
| 1,881,204 | T→C | 100% | 100% | intergenic (+183/‑8) | yeaU → / → yeaV | putative tartrate dehydrogenase/putative transport protein |
| 1,884,815 | G→A | 100% | 100% | R316H (CGC→CAC) | yeaX → | putative diogenase beta subunit |
| 1,889,990 | T→A | 100% | 95.7% | S424C (AGC→TGC) | b1808 ← | hypothetical protein |
| 1,893,654 | A→G | 58.6% | T276A (ACG→GCG) | pabB → | p‑aminobenzoate synthetase component I | |
| 1,893,920 | T→C | 100% | 97.2% | G364G (GGT→GGC) | pabB → | p‑aminobenzoate synthetase component I |
| 1,900,472 | T→C | 100% | 96.6% | V134A (GTT→GCT) | manX → | PTS enzyme IIAB, mannose‑specific |
| 1,914,464 | Δ1 bp | 100% | 98.4% | coding (183/1284 nt) | b1833 → | hypothetical protein |
| 1,920,554 | T→C | 100% | 97.8% | D147G (GAT→GGT) | b1838 ← | protein phosphatase 1 |
| 1,924,467 | T→C | 100% | 96.8% | P108P (CCT→CCC) | b1844 → | hypothetical protein |
| 1,929,521 | T→C | 100% | 100% | L206P (CTG→CCG) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| 1,949,344 | G→A | 51.6% | Q174Q (CAG→CAA) | yecD → | hypothetical protein | |
| 1,953,793 | T→C | 100% | 97.7% | G413G (GGA→GGG) | b1872 ← | biotin sulfoxide reductase 2 |
| 1,963,151 | A→G | 100% | 100% | A355A (GCT→GCC) | flhB ← | FlhB |
| 1,976,527 | Δ776 bp | 100% | insB5–insA5 | insB5, insA5 | ||
| 1,980,940 | +C | 100% | 100% | coding (1/363 nt) coding (627/627 nt) |
araH ← araH ← |
ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component |
| 1,985,245 | A→G | 64.1% | T100A (ACG→GCG) | yecI → | ferritin‑like protein | |
| 1,996,614 | T→C | 100% | 99.0% | D297G (GAC→GGC) | b1919 ← | putative 1‑aminocyclopropane‑1‑carboxylate deaminase |
| 2,008,480 | +A | 100% | 99.0% | coding (637/654 nt) | yedK → | hypothetical protein |
| 2,011,668 | A→G | 100% | 98.8% | T140A (ACC→GCC) | fliF → | FliF |
| 2,012,544 | A→G | 100% | 98.2% | S432G (AGT→GGT) | fliF → | FliF |
| 2,012,638 | T→C | 100% | 100% | V463A (GTG→GCG) | fliF → | FliF |
| 2,043,272 | A→G | 100% | 100% | S130G (AGT→GGT) | b1978 → | hypothetical protein |
| 2,070,275 | G→A | 56.9% | G239S (GGC→AGC) | b2000 → | outer membrane fluffing protein | |
| 2,072,030 | T→A | 100% | 100% | C824S (TGC→AGC) | b2000 → | outer membrane fluffing protein |
| 2,072,182 | T→C | 63.2% | G874G (GGT→GGC) | b2000 → | outer membrane fluffing protein | |
| 2,072,384 | (C)6→7 | 100% | 97.8% | coding (2824/3120 nt) | b2000 → | outer membrane fluffing protein |
| 2,072,439 | A→G | 100% | 100% | Q960R (CAG→CGG) | b2000 → | outer membrane fluffing protein |
| 2,082,410 | T→C | 100% | 98.4% | A22A (GCA→GCG) | yeeD ← | hypothetical protein |
| 2,084,512 | A→G | 100% | 99.0% | R193R (CGT→CGC) | yeeF ← | putative amino acid/amine transport protein |
| 2,102,336 | A→G | 100% | 99.0% | W66R (TGG→CGG) | wbbK ← | putative glucose transferase |
| 2,153,206 | T→C | 100% | 100% | V439A (GTG→GCG) | b2074 → | putative membrane protein |
| 2,155,098 | T→C | 100% | 100% | L605P (CTG→CCG) | yegN → | hypothetical protein |
| 2,183,895 | (G)7→8 | 100% | 98.1% | intergenic (‑79/‑42) | yohL ← / → yohM | hypothetical protein/hypothetical protein |
| 2,197,577 | T→C | 100% | 98.9% | intergenic (+3224/‑722) | metG → / → yehI | methionine tRNA synthetase/putative regulator |
| 2,216,746 | G→C | 100% | 100% | S252S (TCC→TCG) | yehZ ← | putative transport system permease protein |
| 2,225,969 | A→G | 57.0% | S191P (TCA→CCA) | yohG ← | putative channel/filament proteins | |
| 2,235,796 | T→C | 100% | 99.2% | H505R (CAC→CGC) | mglA ← | MglA |
| 2,260,454 | A→G | 100% | 98.5% | G354G (GGT→GGC) | fruB ← | PTS system, fructose‑specific IIA/fpr component |
| 2,318,226 | T→C | 50.3% | V55A (GTC→GCC) | atoS → | AtoS | |
| 2,332,579 | A→G | 100% | 98.5% | L134P (CTG→CCG) | b2229 ← | hypothetical protein |
| 2,403,601 | T→C | 100% | 99.1% | intergenic (‑515/+122) | b2288 ← / ← lrhA | NADH dehydrogenase I chain A/NADH dehydrogenase transcriptional regulator, LysR family |
| 2,404,897 | A→G | 100% | 99.4% | intergenic (‑236/‑684) | lrhA ← / → b2290 | NADH dehydrogenase transcriptional regulator, LysR family/putative aminotransferase |
| 2,416,514 | A→G | 100% | 98.3% | R479G (AGG→GGG) | yfcC → | putative S‑transferase |
| 2,419,101 | T→C | 100% | 97.9% | L154P (CTG→CCG) | yfcG → | putative S‑transferase |
| 2,424,788 | C→T | 100% | 99.4% | S7S (TCG→TCA) | hisJ ← | histidine‑binding periplasmic protein of high‑affinity histidine transport system |
| 2,429,483 | T→C | 100% | 100% | E65E (GAA→GAG) | dedD ← | putative lipoprotein |
| 2,443,258 | A→G | 100% | 99.3% | V108A (GTC→GCC) | yfcA ← | putative structural protein |
| 2,456,917 | C→T | 57.1% | R88Q (CGG→CAG) | b2341 ← | hypothetical protein | |
| 2,457,232 | T→C | 100% | 99.3% | T420A (ACC→GCC) | b2342 ← | putative acyltransferase |
| 2,460,909 | (C)9→10 | 74.4% | intergenic (+243/‑123) | fadL → / → b2345 | FadL/hypothetical protein | |
| 2,462,885 | T→C | 100% | 98.1% | D48G (GAC→GGC) | vacJ ← | lipoprotein precursor |
| 2,475,572 | A→G | 100% | 98.6% | A26A (GCT→GCC) | dsdC ← | D‑serine dehydratase (deaminase) transcriptional activator |
| 2,481,497 | (A)8→9 | 100% | 98.5% | intergenic (‑138/‑278) | emrK ← / → evgA | multidrug resistance protein K/EvgA |
| 2,487,342 | T→C | 58.1% | T289A (ACA→GCA) | b2372 ← | putative receptor protein | |
| 2,511,347 | T→C | 100% | 99.4% | C96R (TGC→CGC) | nupC → | NupC |
| 2,516,832 | T→C | 100% | 98.3% | intergenic (+1/‑1) | yfeC → / → yfeD | hypothetical protein/hypothetical protein |
| 2,528,223 | (C)5→6 | 100% | 98.4% | intergenic (‑27/+44) | lig ← / ← zipA | DNA ligase/ZipA |
| 2,539,912 | A→G | 100% | 100% | R207R (CGT→CGC) | cysU ← | sulfate, thiosulfate transport system permease T protein |
| 2,547,949 | T→C | 100% | 99.2% | D206G (GAC→GGC) | b2431 ← | hypothetical protein |
| 2,548,787 | A→G | 100% | 99.5% | C150C (TGT→TGC) | b2432 ← | hypothetical protein |
| 2,551,423 | T→C | 100% | 98.6% | V60A (GTC→GCC) | hemF → | coproporphyrinogen III oxidase |
| 2,555,797 | G→A | 100% | 99.2% | G301G (GGC→GGT) | b2441 ← | ethanolamine ammonia‑lyase, heavy chain |
| 2,563,970 | A→G | 100% | 100% | V312A (GTG→GCG) | b2451 ← | hypothetical protein |
| 2,567,072 | T→C | 100% | 99.3% | I154V (ATT→GTT) | b2453 ← | EutG |
| 2,583,000 | A→G | 51.3% | S182S (AGT→AGC) | yffG ← | putative oxidoreductase Fe‑S subunit | |
| 2,606,063 | T→C | 100% | 100% | M376T (ATG→ACG) | hyfF → | hydrogenase 4 membrane subunit |
| 2,620,459 | G→A | 100% | 100% | R69Q (CGG→CAG) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| 2,622,267 | T→C | 100% | 99.4% | L402L (TTA→CTA) | ppk → | polyphosphate kinase |
| 2,627,257 | T→C | 100% | 99.4% | A12A (GCA→GCG) | b4538 ← | hypothetical protein |
| 2,627,272 | A→G | 60.0% | G7G (GGT→GGC) | b4538 ← | hypothetical protein | |
| 2,627,313 | A→G | 100% | 99.4% | S2G (AGT→GGT) | b2504 → | hypothetical protein |
| 2,633,072 | T→C | 100% | 100% | V274A (GTG→GCG) | xseA → | exonuclease VII large subunit |
| 2,636,193 | A→G | 50.3% | G160G (GGT→GGC) | b2512 ← | putative dehydrogenase | |
| 2,640,478 | A→G | 100% | 98.0% | G129G (GGT→GGC) | yfgA ← | putative membrane protein |
| 2,641,750 | A→G | 100% | 100% | L185P (CTG→CCG) | yfgB ← | hypothetical protein |
| 2,656,335 | G→A | 100% | 100% | D207D (GAC→GAT) | hscA ← | HscA |
| 2,664,389 | T→C | 100% | 98.9% | V319A (GTC→GCC) | csiE → | hypothetical protein |
| 2,676,851 | A→G | 100% | 100% | R179R (CGT→CGC) | yphF ← | putative LACI‑type transcriptional regulator |
| 2,682,855 | T→C | 59.4% | T225A (ACC→GCC) | glyA ← | serine hydroxymethyltransferase | |
| 2,683,844 | (A)7→8 | 54.4% | intergenic (‑317/‑11) | glyA ← / → hmpA | serine hydroxymethyltransferase/dihydropteridine reductase | |
| 2,691,024 | A→T | 100% | 100% | F847Y (TTT→TAT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| 2,702,744 | T→C | 62.5% | T196A (ACC→GCC) | lepB ← | leader peptidase | |
| 2,722,352 | (G)5→6 | 100% | 99.3% | coding (154/273 nt) | yfiM → | hypothetical protein |
| 2,723,618 | T→C | ? | 52.8% | H50R (CAC→CGC) | kgtP ← | alpha‑ketoglutarate permease |
| 2,729,373 | +C | 100% | 100% | intergenic (‑195/+247) | rrsG ← / ← clpB | 16S ribosomal RNA/ClpB |
| 2,735,727 | C→T | 100% | 99.2% | intergenic (+61/‑38) | pheL → / → pheA | PheL/chorismate mutase‑P |
| 2,737,047 | T→C | 100% | 98.9% | H348R (CAC→CGC) | tyrA ← | chorismate mutase‑T |
| 2,747,389 | Δ1 bp | 100% | 100% | coding (572/591 nt) | b4540 → | hypothetical protein |
| 2,751,091 | G→C | 100% | 100% | A426P (GCT→CCT) | recN → | RecN |
| 2,754,173 | A→G | 100% | 99.4% | intergenic (+774/‑7) | smpB → / → intA | small protein B/prophage CP4‑57 integrase |
| 2,760,511 | A→T | 100% | 100% | W351R (TGG→AGG) | yfjK ← | hypothetical protein |
| 2,766,382 | C→G | 100% | 100% | P218A (CCC→GCC) | b2632 → | putative GTP‑binding protein |
| 2,766,423 | G→A | 100% | 100% | R231R (CGG→CGA) | b2632 → | putative GTP‑binding protein |
| 2,766,427 | 2 bp→AC | 100% | 100% | coding (697‑698/864 nt) | b2632 → | putative GTP‑binding protein |
| 2,766,473 | A→G | 100% | 100% | D248G (GAT→GGT) | b2632 → | putative GTP‑binding protein |
| 2,766,475 | A→G | 100% | 100% | T249A (ACC→GCC) | b2632 → | putative GTP‑binding protein |
| 2,770,753 | T→C | 54.8% | intergenic (‑578/+104) | b2638 ← / ← b4541 | hypothetical protein/hypothetical protein | |
| 2,777,636 | T→C | ? | 55.6% | S1081G (AGT→GGT) | ypjA ← | putative ATP‑binding component of a transport system |
| 2,781,020 | +G | 100% | 100% | intergenic (‑144/+65) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| 2,781,027 | C→G | 100% | 100% | intergenic (‑151/+58) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| 2,783,519 | T→C | 100% | 99.1% | intergenic (+147/+263) | b2651 → / ← ileY | hypothetical protein/tRNA‑Ile |
| 2,785,180 | Δ1 bp | 100% | 100% | coding (413/495 nt) | b2655 → | hypothetical protein |
| 2,810,863 | T→C | 61.3% | V76A (GTC→GCC) | emrB → | EmrB | |
| 2,812,859 | Δ1 bp | 100% | 100% | intergenic (‑105/+46) | ygaG ← / ← gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
| 2,820,144 | Δ1 bp | 100% | 100% | intergenic (+24/+18) | b4542 → / ← oraA | hypothetical protein/OraA |
| 2,820,999 | T→G | 100% | 98.6% | Y265S (TAC→TCC) | recA ← | RecA |
| 2,821,415 | T→C | 100% | 98.6% | A126A (GCA→GCG) | recA ← | RecA |
| 2,823,915 | A→G | 100% | 100% | K21E (AAG→GAG) | srlA → | PTS system, glucitol/sorbitol‑specific IIC component |
| 2,824,797 | T→C | 100% | 100% | F128S (TTT→TCT) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| 2,825,102 | T→C | 100% | 100% | F230L (TTC→CTC) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| 2,827,236 | T→C | 100% | 97.6% | V56A (GTG→GCG) | srlR → | SrlR |
| 2,838,044 | +G | 100% | 100% | coding (498/1458 nt) | ascF → | PTS system enzyme IIBC |
| 2,838,055 | Δ1 bp | 100% | 100% | coding (509/1458 nt) | ascF → | PTS system enzyme IIBC |
| 2,842,033 | G→T | 100% | 100% | R67R (CGC→CGA) | hycG ← | hydrogenase activity |
| 2,856,140 | T→A | 100% | 98.6% | L342Q (CTG→CAG) | mutS → | MutS |
| 2,865,029 | T→C | 60.6% | A182A (GCA→GCG) | rpoS ← | sigma S factor | |
| 2,865,844 | A→G | 100% | 98.6% | G311G (GGT→GGC) | nlpD ← | lipoprotein |
| 2,896,819 | +C | 100% | 99.5% | coding (622/657 nt) | ygcU ← | putative oxidoreductase subunit |
| 2,904,001 | 1,187,600 bp x 2 | 100% | duplication | [b2778]–[rhaD] | 1130 genes [b2778], eno, pyrG, mazG, chpA, chpR, relA, ygcA, barA, ygcX, ygcY, b2789, b2790, yqcB, b2792, syd, yqcD, ygdH, sdaC, sdaB, b2798, fucO, fucA, fucP, fucI, fucK, fucU, fucR, ygdE, ygdD, gcvA, b2809, b2810, ygdK, ygdL, mltA, metZ, metW, metV, b2817, argA, recD, recB, ptr, recC, ppdC, b2824, ppdB, ppdA, thyA, lgt, ptsP, ygdP, mutH, b2832, b2833, b2834, ygeD, aas, galR, lysA, lysR, ygeA, araE, kduD, kduI, yqeF, b2845, yqeH, yqeI, b2848, yqeK, ygeF, ygeG, ygeH, b2853, b2854, ygeK, b2856, b2857, ygeN, b2859, yi224, yi214, b2862, b2863, glyU, b2865, b2866, ygeT, b2868, ygeV, ygeW, ygeX, ygeY, b2873, yqeA, b2875, b2876, ygfJ, b2878, b2879, b2880, b2881, ygfO, ygfP, ygfQ, ygfR, b2886, ygfT, ygfU, b2889, lysS, prfB, prfB, recJ, dsbC, xerD, fldB, b2896, ygfY, ygfZ, b2899, yqfB, bglA, ygfF, gcvP, gcvH, gcvT, visC, ubiH, pepP, b2909, ygfE, b2912, serA, rpiA, yqfE, iciA, sbm, ygfD, b2919, ygfH, b2921, yggE, yggA, yggB, fba, pgk, epd, yggC, yggD, yggF, b2931, yggP, cmtA, cmtB, tktA, yggG, speB, speA, yqgB, yqgC, yqgD, metK, galP, sprT, endA, b2946, gshB, b2948, yqgF, yggR, yggS, yggT, yggU, yggV, yggW, yggM, ansB, yggN, b2959, yggH, mutY, yggX, mltC, b2964, b2965, yqgA, pheV, yghD, yghE, b2970, b2971, b2972, b2973, b2974, yghK, glcB, glcG, glcF, glcD, glcC, b2981, trs59, b2983, yghR, yghS, yghT, pitB, gsp, b2989, hybG, hybF, hybE, hybD, hybC, hybB, hybA, b2997, b2998, b3001, yqhA, yghA, b3004, exbD, exbB, b3007, metC, yghB, yqhC, yqhD, b3012, yqhG, yqhH, ygiRQ, ygiRQ, sufI, plsC, parC, b3020, b3021, b3022, b3023, ygiW, qseB, qseC, b3027, mdaB, ygiN, parE, yqiA, icc, yqiB, yqiE, tolC, ygiA, ygiB, ygiC, ygiD, ygiE, b4544, ribB, b3042, ygiL, yi215, yi225, yqiG, b3047, yqiI, glgS, b3050, b3051, b3052, glnE, ygiF, ygiM, cca, bacA, ygiG, ygiH, ygiP, ttdA, ttdB, ygjE, ygjD, rpsU, dnaG, rpoD, ygjF, ileX, yqjH, yqjI, aer, b3073, ygjH, ebgR, b3076, ebgC, ygjI, ygjJ, ygjK, ygjL, ygjM, ygjN, b3084, ygjP, ygjQ, ygjR, ygjT, ygjU, ygjV, uxaA, uxaC, exuT, exuR, yqjA, yqjB, yqjC, yqjD, yqjE, b3100, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, yhaNM, yhaNM, yhaO, yhaP, yhaQ, yhaR, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC, b3122, b3124, yhaE, yhaF, yhaU, yhaG, sohA, yhaV, agaR, agaZ, b3133, agaW, agaA, agaS, agaY, agaB, agaC, agaD, agaI, yraH, yraI, yraJ, yraK, yraL, yraM, yraN, yraO, yraP, yraQ, yraR, yhbO, yhbP, yhbQ, yhbS, yhbT, yhbU, yhbV, yhbW, mtr, deaD, yhbM, b3164, rpsO, truB, rbfA, infB, nusA, b3170, metY, argG, b3173, leuU, secG, mrsA, b3177, hflB, ftsJ, yhbY, b3181, dacB, yhbZ, yhbE, rpmA, rplU, ispB, nlp, murA, yrbA, b3191, yrbC, yrbD, yrbE, yrbF, yrbG, yrbH, yrbI, yrbK, yhbN, yhbG, rpoN, yhbH, ptsN, yhbJ, ptsO, yrbL, mtgA, yhbL, arcB, yhcC, gltB, gltD, gltF, yhcA, yhcD, yhcE, trs510, b4545, yhcF, yhcG, yhcH, yhcI, yhcJ, b3224, nanA, b3226, yhcL, sspB, sspA, rpsI, rplM, yhcM, yhcB, degQ, degS, mdh, argR, yhcN, yhcO, yhcP, yhcQ, yhcR, qseA, tldD, cafA, yhdE, mreD, mreC, mreB, yhdA, yhdH, b3254, accB, accC, yhdT, b3258, prmA, yhdG, fis, b3262, yhdU, envR, acrE, acrF, yhdV, b3269, yhdY, yhdZ, rrfF, thrV, rrfD, rrlD, alaU, ileU, rrsD, b3279, yrdB, aroE, yrdC, yrdD, smg, smf, smf, def, fmt, sun, trkA, mscL, yhdL, yhdM, yhdN, rplQ, rpoA, rpsD, rpsK, rpsM, rpmJ, prlA, rplO, rpmD, rpsE, rplR, rplF, rpsH, rpsN, rplE, rplX, rplN, rpsQ, rpmC, rplP, rpsC, rplV, rpsS, rplB, rplW, rplD, rplC, rpsJ, pinO, yheD, yheE, b3325, yheG, hofF, hofG, hofH, b3330, yheI, yheJ, yheK, pshM, hofD, bfr, yheA, yheB, tufA, fusA, rpsG, rpsL, yheL, yheM, yheN, b3346, fkpA, slyX, slyD, b4546, kefB, yheR, yheS, yheT, yheU, prkB, yhfA, crp, yhfK, argD, pabA, fic, yhfG, ppiA, yhfC, nirB, nirD, nirC, cysG, yhfL, yhfM, yhfN, b3372, yhfP, yhfQ, b3375, yhfS, yhfT, yhfU, yhfV, yhfW, yhfX, yhfY, yhfZ, trpS, gph, rpe, dam, damX, aroB, aroK, hofQ, b3392, yrfB, yrfC, b3395, mrcA, yrfE, yrfF, b3399, yrfH, yrfI, yhgE, pckA, envZ, ompR, greB, b3407, feoA, feoB, yhgG, yhgA, bioH, yhgH, yhgI, gntT, malQ, malP, malT, yhgKJ, yhgKJ, rtcB, rtcR, glpR, glpG, glpE, glpD, b3427, glgP, glgA, glgC, glgX, glgB, asd, yhgN, gntK, gntR, yhhW, yhhX, yhhY, yhhZ, yrhA, insA6, insB6, b4547, yrhB, ggt, yhhA, ugpQ, ugpC, ugpE, ugpA, ugpB, b3454, livG, livM, livH, livK, yhhK, b3460, rpoH, ftsX, ftsE, ftsY, yhhF, yhhL, yhhM, yhhN, zntA, yhhP, yhhQ, b3472, yhhS, b3474, yhhU, nikA, nikB, nikC, nikD, nikE, yhhG, rhsB, yhhH, yhhI, b3485, yhiH, yhiI, yhiJ, yhiK, yhiL, yhiM, yhiN, pitA, yhiO, uspA, yhiP, yhiQ, prlC, yhiR, gor, arsR, b3502, arsC, yhiS, trs511, b3506, yhiF, yhiD, hdeB, hdeA, hdeD, yhiE, yhiU, yhiV, yhiW, yhiX, gadA, yhjA, treF, yhjB, yhjC, yhjD, yhjE, yhjG, yhjH, kdgK, yhjJ, dctA, yhjK, b3530, yhjM, yhjN, b3533, yhjQ, yhjR, yhjS, yhjT, yhjU, yhjV, dppF, dppD, dppC, dppB, dppA, proK, yhjW, yhjX, b3548, tag, yiaC, bisC, yiaD, yiaE, yiaF, yiaG, cspA, yiaZ, yi5A, t150, glyS, glyQ, b4548, yiaH, yiaA, yiaB, xylB, xylA, xylF, xylG, xylH, xylR, bax, malS, avtA, yiaI, yiaJ, yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE, yiaT, yiaU, yiaV, yiaW, b3588, yiaY, selB, selA, yibF, rhsA, yibA, yibJ, yibG, b4549, yibH, yibI, mtlA, mtlD, mtlR, b4550, yibL, lldP, lldR, lldD, yibK, cysE, gpsA, secB, grxC, yibN, yibO, b3613, b3614, yibD, tdh, kbl, htrL, rfaD, rfaF, rfaC, rfaL, rfaK, rfaZ, rfaY, rfaJ, rfaI, rfaB, rfaS, rfaP, rfaG, rfaQ, kdtA, kdtB, mutM, rpmG, rpmB, radC, b3639, dut, b3641, pyrE, rph, yicC, dinD, b3646, yicF, gmk, rpoZ, spoT, spoU, recG, gltS, yicE, yicH, yicI, b3657, selC, b4551, yicK, yicL, nlpA, b4552, yicM, yicN, yicO, yicP, uhpT, uhpC, b3668, uhpA, ilvN, ilvB, ivbL, emrD, yidF, yidG, yidH, yidI, yidJ, yidK, yidL, glvG, b4553, yidP, yidE, ibpB, ibpA, yidQ, yidR, yidS, b3691, dgoA, dgoK, b3694, yidW, yidX, yidA, b3698, gyrB, recF, dnaN, dnaA, rpmH, rnpA, yidD, yidC, thdF, tnaL, b3708, tnaB, yidY, yidZ, yieE, yieF, yieG, yieH, yieI, yieJ, b3718, yieL, yieC, bglB, bglF, bglG, phoU, pstB, pstA, pstC, pstS, glmS, glmU, atpC, atpD, atpG, atpA, atpH, atpF, atpE, atpB, atpI, gidB, gidA, mioC, asnC, asnA, yieM, b4564, yieN, kup, rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, yieO, yiePs, rrsC, gltU, rrlC, rrfC, aspT, trpT, yifDA, yifDA, yifE, yifB, ilvL, ilvG, ilvG, ilvM, ilvE, ilvD, ilvA, ilvY, ilvC, ppiC, rep, gppA, rhlB, trxA, rhoL, rho, b4565, rfe, wzzE, wecB, wecC, rffG, rffH, wecD, wecE, wzxE, wecF, wecG, yifK, argX, hisR, leuT, proM, aslB, aslA, hemY, hemX, hemD, hemC, cyaA, cyaY, b3808, yifL, dapF, yigA, xerC, yigB, uvrD, b4566, corA, yigF, yigG, rarD, yigI, pldA, recQ, b4568, yigJ, yigK, b4554, pldB, b4555, yigM, metR, metE, ysgA, udp, yigN, ubiE, yigP, yigR, b3836, b3838, yigU, tatD, b4556, tatD, rfaH, yigC, ubiB, fadA, fadB, pepQ, b3848, trkH, hemG, rrsA, ileT, alaT, rrlA, rrfA, mobB, mobA, yihD, yihE, dsbA, b3861, yihG, polA, yihA, yihI, hemN, glnG, glnL, glnA, yihK, yihL, yihM, yihN, yshA, b3876, b3877, yihQ, b3879, yihS, yihT, yihU, yihV, yihW, b3885, rbn, yihZ, yiiD, yiiE, yiiF, fdhE, fdoI, fdoH, fdoG, b4557, fdhD, yiiG, frvR, frvX, frvB, frvA, yiiL, [rhaD] |
|
| 2,906,235 | C→T | 100% | 98.4% | G485D (GGT→GAT) | pyrG ← | CTP synthetase |
| 2,939,218 | G→A | 100% | 99.5% | C16C (TGC→TGT) | ygdE ← | hypothetical protein |
| 2,941,717 | A→G | 100% | 98.9% | H120R (CAC→CGC) | b2810 → | hypothetical protein |
| 2,959,806 | A→G | 100% | 98.4% | G215G (GGT→GGC) | recC ← | RecC |
| 2,963,192 | C→T | 100% | 98.8% | V290I (GTT→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| 2,963,236 | A→G | 100% | 98.8% | V275A (GTG→GCG) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| 2,972,555 | A→G | 100% | 98.7% | S494S (AGT→AGC) | aas ← | 2‑acyl‑glycerophospho‑ethanolamine acyltransferase |
| 2,976,431 | T→C | 100% | 98.4% | H164R (CAC→CGC) | lysA ← | diaminopimelate decarboxylase |
| 2,998,394 | A→G | 100% | 98.5% | T10A (ACC→GCC) | b2866 → | hypothetical protein |
| 3,005,399 | +C | 100% | 100% | coding (1044/1092 nt) | ygeW → | putative carbamoyl transferase |
| 3,011,187 | T→C | 100% | 98.7% | E358E (GAA→GAG) | b2875 ← | putative synthases |
| 3,015,070 | T→C | 100% | 100% | G330G (GGT→GGC) | b2878 → | putative oxidoreductase Fe‑S subunit |
| 3,021,627 | T→C | 100% | 99.6% | V764A (GTT→GCT) | b2881 → | putative dehydrogenase |
| 3,021,808 | T→C | 100% | 97.5% | R824R (CGT→CGC) | b2881 → | putative dehydrogenase |
| 3,025,676 | +C | 100% | 100% | coding (535/570 nt) | ygfQ → | hypothetical protein |
| 3,026,175 | A→G | 100% | 99.2% | V166V (GTA→GTG) | ygfR → | putative oxidoreductase |
| 3,032,764 | C→T | 100% | 98.6% | R144H (CGT→CAT) | lysS ← | lysine tRNA synthetase |
| 3,036,598 | A→G | 58.8% | V82A (GTC→GCC) | dsbC ← | disulfide isomerase II | |
| 3,037,475 | T→C | 100% | 99.3% | S97G (AGT→GGT) | xerD ← | XerD |
| 3,054,906 | A→G | 100% | 100% | intergenic (+97/+292) | b2912 → / ← serA | putative ligase/D‑3‑phosphoglycerate dehydrogenase |
| 3,058,415 | A→G | 100% | 99.6% | S215G (AGC→GGC) | iciA → | replication initiation inhibitor |
| 3,059,022 | T→C | 60.3% | G51G (GGT→GGC) | sbm → | methylmalonyl‑CoA mutase | |
| 3,075,220 | (T)5→6 | 100% | 100% | coding (256/357 nt) | yggP ← | hypothetical protein |
| 3,077,514 | Δ1 bp | 100% | 100% | intergenic (‑165/+149) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| 3,077,640 | +G | 100% | 100% | intergenic (‑291/+23) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| 3,077,905 | A→G | 100% | 100% | S584P (TCG→CCG) | tktA ← | transketolase 1 isozyme |
| 3,078,245 | C→G | 100% | 100% | G470G (GGG→GGC) | tktA ← | transketolase 1 isozyme |
| 3,084,101 | T→C | 100% | 98.8% | intergenic (‑16/‑105) | yqgB ← / → yqgC | hypothetical protein/hypothetical protein |
| 3,087,418 | A→G | 63.3% | V372V (GTA→GTG) | galP → | galactose‑proton symport of transport system | |
| 3,098,418 | A→G | 55.2% | G110G (GGT→GGC) | ansB ← | periplasmic L‑asparaginase II | |
| 3,099,661 | (A)5→6 | 100% | 100% | intergenic (‑19/+164) | yggN ← / ← b2959 | hypothetical protein/hypothetical protein |
| 3,107,469 | +C | 100% | 100% | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
| 3,108,438 | C→A | 100% | 100% | noncoding (56/76 nt) | pheV → | tRNA‑Phe |
| 3,108,630 | G→A | 100% | 98.7% | R172W (CGG→TGG) | yghD ← | putative secretion pathway protein |
| 3,115,116 | +C | 100% | 100% | coding (2013/2028 nt) | b2974 ← | putative endoglucanase |
| 3,118,108 | A→G | 62.0% | G396G (GGT→GGC) | yghK ← | putative permease | |
| 3,122,609 | T→C | 64.0% | E643E (GAA→GAG) | glcF ← | glycolate oxidase iron‑sulfur subunit | |
| 3,123,585 | +G | 100% | 100% | coding (953/2286 nt) | glcF ← | glycolate oxidase iron‑sulfur subunit |
| 3,127,865 | T→C | 100% | 99.2% | A122A (GCA→GCG) | b2981 ← | hypothetical protein |
| 3,130,334 | A→G | 100% | 100% | V30V (GTT→GTC) | b2983 ← | hypothetical protein |
| 3,152,247 | +C | 100% | 100% | intergenic (+10/+29) | yghB → / ← yqhC | hypothetical protein/putative ARAC‑type regulatory protein |
| 3,156,257 | (CCA)2→1 | 100% | 100% | coding (594‑596/930 nt) | yqhG → | hypothetical protein |
| 3,158,202 | +C | 100% | 100% | coding (961/975 nt) | ygiRQ ← | Fe‑S oxidoreductase |
| 3,166,935 | 2 bp→CG | 100% | 100% | coding (312‑313/483 nt) | b3023 ← | hypothetical protein |
| 3,174,443 | T→C | 100% | 100% | H136R (CAC→CGC) | icc ← | Icc |
| 3,175,745 | A→G | 100% | 98.8% | V61A (GTC→GCC) | yqiE ← | hypothetical protein |
| 3,179,042 | T→C | 100% | 99.6% | A202A (GCT→GCC) | ygiC → | putative synthetase/amidase |
| 3,185,776 | T→C | 100% | 100% | F121L (TTC→CTC) | yqiG → | putative membrane protein |
| 3,185,807 | T→C | 100% | 100% | F131S (TTT→TCT) | yqiG → | putative membrane protein |
| 3,190,907 | T→C | 100% | 98.2% | S10P (TCC→CCC) | b3051 → | putative membrane protein |
| 3,205,532 | T→C | 100% | 99.1% | L174P (CTG→CCG) | ttdB → | L‑tartrate dehydratase subunit B |
| 3,208,420 | A→G | 100% | 98.6% | intergenic (‑236/‑2) | ygjD ← / → rpsU | putative O‑sialoglycoprotein endopeptidase/30S ribosomal subunit protein S21 |
| 3,210,997 | G→A | 100% | 100% | E104K (GAA→AAA) | rpoD → | RNA polymerase sigma(70) |
| 3,212,115 | T→C | 65.3% | R476R (CGT→CGC) | rpoD → | RNA polymerase sigma(70) | |
| 3,212,429 | A→G | 100% | 98.9% | D581G (GAC→GGC) | rpoD → | RNA polymerase sigma(70) |
| 3,221,097 | 2 bp→GC | 100% | 100% | coding (824‑825/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| 3,222,944 | Δ2 bp | 100% | coding (2671‑2672/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit | |
| 3,222,944 | 4 bp→AGCA | 100% | coding (2671‑2674/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit | |
| 3,222,948 | +AC | 100% | coding (2675/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit | |
| 3,224,879 | Δ1 bp | 100% | 100% | coding (1005/1434 nt) | ygjI → | putative oxidoreductase |
| 3,224,926 | +C | 100% | 100% | coding (1052/1434 nt) | ygjI → | putative oxidoreductase |
| 3,236,177 | Δ1 bp | 100% | 100% | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
| 3,236,735 | +C | 100% | 100% | coding (514/966 nt) | ygjT → | putative transport protein |
| 3,236,758 | Δ1 bp | 100% | 100% | coding (537/966 nt) | ygjT → | putative transport protein |
| 3,237,242 | +C | 100% | 100% | intergenic (+55/‑342) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| 3,237,247 | +C | 100% | 100% | intergenic (+60/‑337) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| 3,253,742 | Δ1 bp | 100% | 100% | coding (551/552 nt) | yhaNM ← | hypothetical protein |
| 3,255,594 | Δ1 bp | 100% | 100% | coding (4/1278 nt) | yhaO ← | putative transport system permease protein |
| 3,255,616 | Δ1 bp | 100% | 100% | intergenic (‑19/+312) | yhaO ← / ← yhaP | putative transport system permease protein/putative L‑serine dehydratase |
| 3,256,893 | +C | 100% | 100% | coding (405/423 nt) | yhaQ ← | putative L‑serine dehydratase |
| 3,257,838 | +G | 100% | 100% | coding (2222/2241 nt) | tdcE ← | putative formate acetyltransferase 3 |
| 3,265,441 | T→C | 100% | 99.2% | intergenic (+202/‑33) | tdcR → / → yhaB | threonine dehydratase operon activator protein/hypothetical protein |
| 3,268,129 | (C)7→8 | 100% | 96.2% | intergenic (+661/+137) | b3122 → / ← b3124 | hypothetical protein/hypothetical protein |
| 3,279,197 | A→C | 100% | 100% | R145S (AGA→AGC) | agaA → | putative N‑acetylgalactosamine‑6‑phosphate deacetylase |
| 3,300,826 | G→A | 100% | 99.2% | E239K (GAG→AAG) | yhbV → | hypothetical protein |
| 3,311,437 | T→C | 100% | 100% | N740S (AAC→AGC) | infB ← | protein chain initiation factor IF‑2 |
| 3,312,337 | A→G | 64.2% | I440T (ATC→ACC) | infB ← | protein chain initiation factor IF‑2 | |
| 3,320,557 | T→C | 63.7% | P385P (CCA→CCG) | mrsA ← | MrsA | |
| 3,325,501 | T→C | 100% | 99.7% | L24P (CTT→CCT) | yhbY → | hypothetical protein |
| 3,347,212 | A→G | 54.7% | V80A (GTG→GCG) | mtgA ← | putative peptidoglycan enzyme | |
| 3,349,263 | (CCGGTG)1→2 | 100% | coding (1398/2331 nt) | arcB ← | aerobic respiration sensor‑response protein | |
| 3,349,294 | T→C | 100% | 100% | Q456R (CAG→CGG) | arcB ← | aerobic respiration sensor‑response protein |
| 3,352,254 | 2 bp→GC | 100% | 100% | intergenic (‑569/‑12) | yhcC ← / → gltB | hypothetical protein/glutamate synthase large subunit |
| 3,359,814 | T→C | 100% | 99.7% | V23A (GTT→GCT) | yhcA → | putative chaperone |
| 3,374,875 | T→G | 100% | 97.7% | T61P (ACC→CCC) | sspA ← | stringent starvation protein A |
| 3,376,055 | T→C | 100% | 99.2% | T78A (ACC→GCC) | rplM ← | 50S ribosomal subunit protein L13 |
| 3,389,812 | Δ1 bp | 100% | 100% | intergenic (‑149/+4151) | tldD ← / ← cafA | TldD/CafA |
| 3,393,106 | Δ1 bp | 100% | 100% | intergenic (‑3443/+857) | tldD ← / ← cafA | TldD/CafA |
| 3,395,276 | T→C | 100% | 99.3% | M59V (ATG→GTG) | cafA ← | CafA |
| 3,399,656 | A→G | 49.1% | G438G (GGT→GGC) | yhdA ← | hypothetical protein | |
| 3,418,840 | +G | 100% | 100% | coding (1070/1089 nt) | b3269 → | putative transport system permease protein |
| 3,419,398 | (T)7→6 | 100% | 99.6% | coding (441/1107 nt) | yhdY → | putative transport system permease protein |
| 3,421,120 | Δ1 bp | 100% | 100% | noncoding (60/121 nt) | rrfF ← | 5S ribosomal RNA |
| 3,426,144 | A→G | 58.7% | noncoding (256/1542 nt) | rrsD ← | 16S ribosomal RNA | |
| 3,429,527 | Δ1 bp | 100% | 100% | coding (40/510 nt) | yrdD ← | putative DNA topoisomerase |
| 3,430,453 | +C | 100% | 100% | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
| 3,434,252 | G→A | 100% | 98.4% | G33D (GGT→GAT) | trkA → | TrkA |
| 3,438,720 | T→C | 100% | 98.5% | H198R (CAC→CGC) | rpsD ← | 30S ribosomal subunit protein S4 |
| 3,441,294 | G→A | 100% | 99.3% | G147G (GGC→GGT) | prlA ← | putative ATPase subunit of translocase |
| 3,448,691 | A→G | 100% | 99.7% | I104T (ATC→ACC) | rplB ← | 50S ribosomal subunit protein L2 |
| 3,450,175 | T→C | 100% | 99.7% | Q130R (CAG→CGG) | rplC ← | 50S ribosomal subunit protein L3 |
| 3,457,218 | T→C | 100% | 98.8% | C415R (TGC→CGC) | yheG → | YheG |
| 3,461,973 | T→C | 100% | 99.1% | C140R (TGC→CGC) | yheK → | putative export protein K |
| 3,467,322 | A→G | 100% | 100% | C57R (TGC→CGC) | yheB ← | hypothetical protein |
| 3,469,043 | A→G | 100% | 100% | G703G (GGT→GGC) | fusA ← | GTP‑binding protein chain elongation factor EF‑G |
| 3,493,873 | T→G | 100% | 99.0% | R742R (CGT→CGG) | nirB → | nitrite reductase (NAD(P)H) subunit |
| 3,499,227 | T→C | 100% | 100% | V115A (GTA→GCA) | yhfN → | putative transport protein |
| 3,500,309 | Δ1 bp | 100% | 100% | coding (333/363 nt) | b3372 → | hypothetical protein |
| 3,509,958 | Δ1 bp | 100% | 100% | intergenic (‑195/+314) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| 3,510,121 | +G | 100% | 100% | intergenic (‑358/+151) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| 3,533,109 | A→G | 100% | 99.3% | V133A (GTC→GCC) | envZ ← | protein histidine kinase |
| 3,537,405 | +GC | 100% | 100% | intergenic (+61/‑394) | b3407 → / → feoA | hypothetical protein/ferrous iron transport protein A |
| 3,544,357 | +G | 100% | 100% | coding (163/1314 nt) | gntT → | gluconate permease |
| 3,544,360 | +G | 100% | 100% | coding (166/1314 nt) | gntT → | gluconate permease |
| 3,544,363 | +C | 100% | 100% | coding (169/1314 nt) | gntT → | gluconate permease |
| 3,548,005 | C→T | 100% | 100% | G701D (GGT→GAT) | malP ← | maltodextrin phosphorylase |
| 3,553,975 | C→T | 100% | 98.9% | E171K (GAA→AAA) | yhgKJ ← | RNA phosphage cyclase |
| 3,554,088 | +C | 100% | 100% | coding (2/624 nt) | yhgKJ ← | RNA phosphage cyclase |
| 3,554,113 | Δ1 bp | 100% | 100% | coding (372/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| 3,554,118 | +C | 100% | 100% | coding (367/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| 3,556,855 | A→G | 100% | 100% | Q319R (CAG→CGG) | rtcR → | putative 2‑component regulator |
| 3,558,932 | 2 bp→GC | 100% | 100% | coding (153‑154/831 nt) | glpG ← | GlpG |
| 3,561,412 | A→G | 100% | 98.4% | V76A (GTG→GCG) | b3427 ← | hypothetical protein |
| 3,562,795 | G→A | 100% | 98.6% | L474L (CTG→TTG) | glgP ← | glycogen phosphorylase |
| 3,573,700 | +C | 100% | 100% | intergenic (+403/+997) | yhgN → / ← gntK | hypothetical protein/gluconokinase 2 |
| 3,575,446 | +G | 100% | 100% | coding (912/942 nt) | gntR ← | GntR |
| 3,588,160 | A→G | 100% | 99.0% | F128S (TTC→TCC) | ugpA ← | UgpA |
| 3,591,480 | T→C | 100% | 99.7% | T120A (ACG→GCG) | livG ← | ATP‑binding component of high‑affinity branched‑chain amino acid transport system |
| 3,602,257 | A→G | 100% | 99.4% | A78A (GCA→GCG) | yhhF → | hypothetical protein |
| 3,610,376 | T→C | 100% | 99.1% | V294A (GTG→GCG) | b3474 → | hypothetical protein |
| 3,627,142 | +G | 100% | 100% | intergenic (‑24/+23) | yhiH ← / ← yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| 3,635,956 | G→A | 58.5% | D229N (GAT→AAT) | pitA → | low‑affinity phosphate transport | |
| 3,652,629 | A→G | 100% | 100% | Y106C (TAC→TGC) | yhiF → | hypothetical protein |
| 3,675,983 | T→C | 100% | 99.4% | T5A (ACG→GCG) | yhjG ← | hypothetical protein |
| 3,682,392 | A→G | 58.5% | V275A (GTG→GCG) | yhjK ← | hypothetical protein | |
| 3,686,775 | +T | 100% | 100% | intergenic (‑23/+9) | b3530 ← / ← yhjM | putative oxidoreductase subunit/putative endoglucanase |
| 3,700,934 | T→C | 100% | 99.4% | T182A (ACC→GCC) | dppD ← | putative ATP‑binding component of dipeptide transport system |
| 3,703,602 | 2 bp→GC | 100% | 100% | intergenic (‑183/+124) | dppB ← / ← dppA | dipeptide transport system permease protein 1/dipeptide transport protein |
| 3,703,857 | A→G | 100% | 99.3% | V493A (GTG→GCG) | dppA ← | dipeptide transport protein |
| 3,707,653 | A→G | 100% | 98.8% | L162P (CTG→CCG) | yhjW ← | hypothetical protein |
| 3,714,436 | 2 bp→GC | 100% | 100% | coding (261‑262/660 nt) | yiaD → | putative outer membrane protein |
| 3,720,144 | T→C | 58.9% | Y628C (TAC→TGC) | glyS ← | glycine tRNA synthetase beta subunit | |
| 3,730,028 | G→A | 100% | 99.6% | G67R (GGA→AGA) | xylG → | putative ATP‑binding protein of xylose transport system |
| 3,734,264 | 2 bp→GC | 100% | 100% | coding (542‑543/825 nt) | bax ← | putative ATP‑binding protein |
| 3,737,956 | 2 bp→CG | 100% | 100% | coding (623‑624/1254 nt) | avtA → | alanine‑alpha‑ketoisovalerate transaminase |
| 3,743,603 | Δ1 bp | 100% | 100% | coding (1171/1275 nt) | yiaN → | putative membrane protein |
| 3,754,310 | C→A | 100% | 100% | R382M (AGG→ATG) | yiaY ← | putative oxidoreductase |
| 3,754,317 | +GCG | 100% | 100% | coding (1138/1149 nt) | yiaY ← | putative oxidoreductase |
| 3,765,203 | A→T | 100% | 100% | Q119L (CAG→CTG) | yibJ → | hypothetical protein |
| 3,765,234 | G→A | 100% | 100% | G129G (GGG→GGA) | yibJ → | hypothetical protein |
| 3,781,277 | A→G | 100% | 99.7% | R4R (CGT→CGC) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| 3,784,235 | A→G | 100% | 99.7% | Q450R (CAG→CGG) | yibO → | putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| 3,787,205 | (C)5→6 | 100% | 98.5% | coding (504/1035 nt) | yibD ← | putative regulator |
| 3,791,003 | T→C | 100% | 99.5% | E108G (GAG→GGG) | htrL ← | HtrL |
| 3,799,097 | T→C | 100% | 99.8% | Q177R (CAG→CGG) | rfaJ ← | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
| 3,814,781 | T→A | 100% | 99.8% | L160Q (CTG→CAG) | yicC → | putative alpha helix protein |
| 3,815,047 | T→C | 100% | 99.2% | F249L (TTC→CTC) | yicC → | putative alpha helix protein |
| 3,823,345 | C→T | 58.0% | A170V (GCG→GTG) | recG → | DNA helicase | |
| 3,838,716 | A→G | 58.9% | G272G (GGT→GGC) | yicM ← | putative transport protein | |
| 3,850,157 | T→C | 56.1% | G85G (GGA→GGG) | ilvB ← | acetolactate synthase I large subunit | |
| 3,851,179 | T→C | 100% | 99.1% | intergenic (‑564/‑364) | ivbL ← / → emrD | ilvB operon leader peptide/2‑module integral membrane pump |
| 3,852,805 | C→T | 53.2% | R145Q (CGG→CAG) | yidF ← | putative transcriptional regulator | |
| 3,853,675 | A→G | 100% | 99.7% | L87P (CTG→CCG) | yidH ← | hypothetical protein |
| 3,855,776 | G→A | 100% | 99.2% | R86C (CGC→TGC) | yidJ ← | putative sulfatase |
| 3,870,631 | Δ1 bp | 100% | 100% | coding (610/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| 3,870,765 | +G | 100% | 100% | coding (476/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| 3,870,876 | Δ1 bp | 100% | 100% | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| 3,872,450 | +G | 100% | 100% | coding (338/387 nt) | yidW ← | regulator protein for dgo operon |
| 3,873,025 | A→G | 100% | 99.6% | intergenic (‑238/‑97) | yidW ← / → yidX | regulator protein for dgo operon/putative replicase |
| 3,873,627 | Δ1 bp | 100% | 100% | coding (506/672 nt) | yidX → | putative replicase |
| 3,876,595 | G→C | 100% | 100% | P385A (CCG→GCG) | gyrB ← | DNA gyrase subunit B |
| 3,879,829 | T→C | 100% | 99.3% | T41A (ACG→GCG) | dnaN ← | DNA polymerase III beta‑subunit |
| 3,881,483 | Δ1 bp | 100% | 100% | intergenic (‑126/‑482) | dnaA ← / → rpmH | DnaA/50S ribosomal subunit protein L34 |
| 3,885,848 | T→C | 55.6% | intergenic (+27/‑216) | thdF → / → tnaL | GTP‑binding protein in thiophene and furan oxidation/tryptophanase leader peptide | |
| 3,886,421 | T→C | 57.6% | R21R (CGT→CGC) | b3708 → | tryptophanase | |
| 3,896,324 | +G | 100% | 100% | coding (698/711 nt) | b3718 ← | putative isomerase |
| 3,908,031 | T→C | 100% | 99.8% | intergenic (‑5/+82) | pstC ← / ← pstS | PstC/PstS |
| 3,919,891 | G→A | 100% | 99.7% | R64C (CGT→TGT) | atpI ← | membrane‑bound ATP synthase |
| 3,923,716 | A→G | 56.5% | I123T (ATC→ACC) | mioC ← | MioC | |
| 3,926,344 | G→A | 100% | 99.0% | H240H (CAC→CAT) | yieM ← | hypothetical protein |
| 3,927,062 | +G | 100% | 100% | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
| 3,930,457 | Δ1 bp | 100% | 100% | coding (1515/1560 nt) | kup → | low affinity potassium transport system |
| 3,930,568 | +G | 100% | 100% | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| 3,930,677 | +G | 100% | 100% | intergenic (+175/‑264) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| 3,936,574 | C→T | 100% | 99.4% | A241V (GCC→GTC) | rbsR → | RbsR |
| 3,938,138 | A→G | 53.3% | L34S (TTA→TCA) | yieO ← | putative transport protein | |
| 3,938,587 | +TGC | 100% | 100% | coding (220/546 nt) | yiePs ← | hypothetical protein |
| 3,941,734 | A→G | 100% | 100% | noncoding (409/2906 nt) | rrlC → | 23S ribosomal RNA |
| 3,941,738 | A→G | 100% | 100% | noncoding (413/2906 nt) | rrlC → | 23S ribosomal RNA |
| 3,944,244 | C→A | 100% | intergenic (+13/‑80) | rrlC → / → rrfC | 23S ribosomal RNA/5S ribosomal RNA | |
| 3,944,676 | 2 bp→GC | 100% | 100% | intergenic (+20/+75) | trpT → / ← yifDA | tRNA‑Trp/transcription regulator |
| 3,945,079 | A→G | 100% | 98.9% | S171S (AGT→AGC) | yifDA ← | transcription regulator |
| 3,945,351 | +C | 100% | 100% | coding (1/600 nt) coding (240/240 nt) |
yifDA ← yifDA ← |
transcription regulator transcription regulator |
| 3,948,864 | A→G | 57.6% | T228A (ACC→GCC) | ilvG → | acetolactate synthase II large subunit | |
| 3,950,557 | 2 bp→GC | 100% | 100% | coding (451‑452/930 nt) | ilvE → | branched‑chain amino‑acid aminotransferase |
| 3,951,166 | +C | 100% | 100% | coding (35/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| 3,951,168 | +G | 100% | 100% | coding (37/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| 3,957,092 | +CC | 100% | 100% | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| 3,957,124 | +G | 100% | 100% | intergenic (+58/+26) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| 3,957,547 | 2 bp→GG | 100% | intergenic (‑116/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase | |
| 3,957,548 | 1 bp→GG | 100% | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase | |
| 3,957,551 | +T | 100% | 100% | intergenic (‑120/‑741) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| 3,957,560 | +C | 100% | 99.7% | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| 3,958,877 | 2 bp→CG | 100% | 100% | coding (586‑587/2022 nt) | rep → | rep helicase |
| 3,960,578 | 2 bp→CG | 100% | 100% | coding (1266‑1267/1485 nt) | gppA ← | guanosine pentaphosphatase |
| 3,961,588 | C→G | 100% | 100% | R86T (AGG→ACG) | gppA ← | guanosine pentaphosphatase |
| 3,964,819 | T→A | 100% | 99.7% | L263Q (CTG→CAG) | rho → | transcription termination factor Rho |
| 3,967,647 | (G)6→7 | 51.5% | coding (1005/1050 nt) | wzzE → | putative transport protein | |
| 3,968,317 | +CGT | 100% | 100% | coding (612/1170 nt) | wecB → | UDP‑N‑acetyl glucosamine ‑2‑epimerase |
| 3,969,103 | 2 bp→GC | 100% | 100% | coding (232‑233/1263 nt) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| 3,971,075 | 2 bp→GC | 100% | 100% | coding (942‑943/1068 nt) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| 3,972,637 | 2 bp→GC | 100% | 100% | coding (430‑431/546 nt) | wecD → | hypothetical protein |
| 3,973,752 | A→G | 100% | 99.3% | H332R (CAC→CGC) | wecE → | putative regulator |
| 3,975,313 | Δ1 bp | 100% | 100% | intergenic (+173/‑901) | wzxE → / → wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
| 3,976,922 | A→G | ? | 52.2% | I237V (ATT→GTT) | wecF → | TDP‑Fuc4NAc:lipidII transferase |
| 3,978,702 | C→T | 100% | 100% | S68F (TCC→TTC) | yifK → | putative amino acid/amine transport protein |
| 3,979,535 | +G | 100% | 100% | coding (1036/1386 nt) | yifK → | putative amino acid/amine transport protein |
| 3,979,546 | Δ1 bp | 100% | 100% | coding (1047/1386 nt) | yifK → | putative amino acid/amine transport protein |
| 3,980,297 | (C)8→9 | 100% | 93.8% | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| 3,980,918 | 2 bp→CG | 100% | 100% | coding (348‑349/1236 nt) | aslB → | putative arylsulfatase regulator |
| 3,987,546 | A→G | 100% | 99.0% | G285G (GGT→GGC) | hemC ← | porphobilinogen deaminase |
| 3,987,586 | 2 bp→GC | 100% | 100% | coding (814‑815/963 nt) | hemC ← | porphobilinogen deaminase |
| 3,987,822 | 2 bp→CG | 100% | 100% | coding (578‑579/963 nt) | hemC ← | porphobilinogen deaminase |
| 3,989,493 | A→G | 100% | 98.7% | Y243C (TAC→TGC) | cyaA → | adenylate cyclase |
| 3,990,760 | T→C | 100% | 99.2% | R665R (CGT→CGC) | cyaA → | adenylate cyclase |
| 3,997,520 | A→G | 100% | 99.6% | E642G (GAA→GGA) | uvrD → | DNA‑dependent ATPase I and helicase II |
| 3,998,290 | +G | 100% | 99.7% | coding (379/486 nt) | b4566 ← | hypothetical protein |
| 4,001,421 | 2 bp→GC | 100% | 100% | coding (381‑382/903 nt) | rarD ← | hypothetical protein |
| 4,001,486 | 2 bp→GC | 100% | 100% | coding (316‑317/903 nt) | rarD ← | hypothetical protein |
| 4,001,717 | +C | 100% | 100% | coding (86/903 nt) | rarD ← | hypothetical protein |
| 4,004,979 | +G | 100% | 100% | coding (1511/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| 4,004,984 | +CG | 100% | 100% | coding (1516/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| 4,005,601 | +C | 100% | 100% | coding (237/282 nt) | b4568 → | hypothetical protein |
| 4,006,483 | +C | 100% | 100% | coding (183/207 nt) | b4554 ← | hypothetical protein |
| 4,007,320 | A→G | 52.2% | N182S (AAC→AGC) | pldB → | lysophospholipase L(2) | |
| 4,007,718 | 2 bp→CG | 100% | 100% | coding (943‑944/1023 nt) | pldB → | lysophospholipase L(2) |
| 4,007,907 | +GG | 100% | 100% | intergenic (+109/‑11) | pldB → / → b4555 | lysophospholipase L(2)/hypothetical protein |
| 4,008,375 | +A | 100% | 100% | coding (458/516 nt) | b4555 → | hypothetical protein |
| 4,008,391 | +C | 100% | 100% | coding (474/516 nt) | b4555 → | hypothetical protein |
| 4,008,393 | C→G | 100% | 100% | A159G (GCT→GGT) | b4555 → | hypothetical protein |
| 4,008,398 | 5 bp→5 bp | 100% | coding (481‑485/516 nt) | b4555 → | hypothetical protein | |
| 4,008,400 | +GAAA | 100% | coding (483/516 nt) | b4555 → | hypothetical protein | |
| 4,008,404 | +G | 100% | coding (487/516 nt) | b4555 → | hypothetical protein | |
| 4,008,411 | +C | 100% | 100% | coding (494/516 nt) | b4555 → | hypothetical protein |
| 4,008,421 | +T | 100% | 100% | coding (504/516 nt) | b4555 → | hypothetical protein |
| 4,008,429 | +TG | 100% | 98.6% | coding (512/516 nt) | b4555 → | hypothetical protein |
| 4,008,469 | +G | 100% | 100% | intergenic (+36/‑197) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,008,473 | +G | 100% | 100% | intergenic (+40/‑193) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,008,491 | 2 bp→CG | 100% | 100% | intergenic (+58/‑174) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,008,525 | +G | 100% | 100% | intergenic (+92/‑141) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| 4,013,176 | C→G | 100% | G182R (GGA→CGA) | ysgA ← | hypothetical protein | |
| 4,013,176 | 2 bp→GC | 100% | coding (543‑544/999 nt) | ysgA ← | hypothetical protein | |
| 4,013,177 | +C | 100% | coding (543/999 nt) | ysgA ← | hypothetical protein | |
| 4,013,717 | +G | 100% | 100% | coding (3/999 nt) | ysgA ← | hypothetical protein |
| 4,013,772 | +C | 100% | 100% | intergenic (‑53/‑246) | ysgA ← / → udp | hypothetical protein/uridine phosphorylase |
| 4,016,743 | C→T | 100% | 100% | P101L (CCC→CTC) | ubiE → | UbiE |
| 4,019,857 | C→T | 100% | 100% | intergenic (+56/‑28) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| 4,019,860 | Δ2 bp | 100% | 100% | intergenic (+59/‑24) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| 4,021,684 | Δ1 bp | 100% | 100% | coding (542/609 nt)|coding (1/243 nt) | b4556 → tatD → |
hypothetical protein Mg‑dependent DNase |
| 4,023,045 | G→A | 67.2% | A156A (GCG→GCA) | yigC → | putative oxidoreductase | |
| 4,024,435 | A→G | 100% | 99.0% | I107V (ATT→GTT) | ubiB → | ferrisiderophore reductase |
| 4,026,252 | 2 bp→GC | 100% | 100% | coding (110‑111/1164 nt) | fadA ← | thiolase I |
| 4,030,374 | T→C | 100% | 99.6% | V98A (GTG→GCG) | b3848 → | hypothetical protein |
| 4,031,984 | +C | 100% | 100% | coding (1250/1299 nt) | trkH → | TrkH |
| 4,034,652 | C→T | 53.5% | noncoding (1533/1542 nt) | rrsA → | 16S ribosomal RNA | |
| 4,039,960 | Δ1 bp | 100% | 100% | intergenic (+42/‑36) | yihD → / → yihE | hypothetical protein/hypothetical protein |
| 4,041,126 | A→G | 100% | 99.1% | E43G (GAG→GGG) | dsbA → | protein disulfide isomerase I |
| 4,041,654 | G→A | 100% | 100% | intergenic (+29/‑125) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| 4,041,671 | (T)6→7 | 100% | 100% | intergenic (+46/‑108) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| 4,051,144 | Δ1 bp | 100% | 100% | intergenic (+146/+305) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| 4,051,170 | +C | 100% | 100% | intergenic (+172/+279) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| 4,057,759 | +C | 100% | 100% | coding (1773/1776 nt) | yihK → | putative GTP‑binding factor |
| 4,061,961 | Δ1 bp | 100% | 100% | coding (1386/1458 nt) | b3876 ← | putative permease |
| 4,062,416 | A→G | 65.2% | W311R (TGG→CGG) | b3876 ← | putative permease | |
| 4,065,486 | A→G | 100% | 99.6% | G457G (GGT→GGC) | yihQ ← | putative glycosidase |
| 4,069,524 | A→G | 58.4% | R236R (CGT→CGC) | yihT ← | putative aldolase | |
| 4,070,656 | T→C | 100% | 100% | M166V (ATG→GTG) | yihU ← | putative dehydrogenase |
| 4,080,993 | T→C | 100% | 99.3% | T804A (ACT→GCT) | fdoG ← | formate dehydrogenase‑O, major subunit |
| 4,083,016 | C→T | 100% | 98.7% | A129A (GCG→GCA) A129A (GCG→GCA) |
fdoG ← b4557 ← |
formate dehydrogenase‑O, major subunit hypothetical protein |
| 4,085,675 | Δ1 bp | 100% | 100% | intergenic (+38/+13) | yiiG → / ← frvR | hypothetical protein/putative frv operon regulatory protein |
| 4,091,351 | C→T | 100% | 100% | G168D (GGC→GAC) | rhaD ← | rhamnulose‑phosphate aldolase |
| 4,091,572 | 3461 bp→29 bp | 100% | [rhaD]–rhaB | [rhaD], rhaA, rhaB | ||
| 4,095,001 | 544,300 bp x 2 | 100% | duplication | [rhaB]–lasT | 507 genes [rhaB], rhaS, rhaR, rhaT, b3908, kdgT, yiiM, cpxA, cpxR, yiiP, pfkA, sbp, cdh, tpiA, yiiQ, yiiR, yiiS, yiiT, fpr, glpX, glpK, glpF, yiiU, menG, menA, hslU, hslV, ftsN, cytR, priA, rpmE, yiiX, metJ, metB, metL, metF, katG, b3943, yijF, b3945, talC, ptsA, yijI, b4558, frwC, frwB, pflD, pflC, frwD, yijO, yijP, ppc, argE, argC, argB, argH, oxyR, udhA, yijC, yijD, trmA, btuB, murI, rrsB, gltT, rrlB, rrfB, murB, birA, coaA, b3975, thrU, tyrU, glyT, thrT, tufB, secE, nusG, rplK, rplA, rplJ, rplL, rpoB, rpoC, htrC, thiH, b3991, thiS, b3992, thiE, thiC, yjaE, yjaD, hemE, nfi, yjaG, hupA, yjaH, yjaI, hydH, hydG, purD, purH, rrsE, gltV, rrlE, rrfE, yjaA, yjaB, metA, aceB, aceA, aceK, arp, iclR, metH, yjbB, pepE, yjbC, yjbD, lysC, pgi, yjbE, b4027, yjbG, yjbH, yjbA, xylE, malG, malF, malE, malK, lamB, malM, b4559, yjbI, ubiC, ubiA, plsB, dgkA, lexA, dinF, yjbJ, b4046, yjbL, yjbM, yjbN, b4050, qor, dnaB, alr, tyrB, aphA, yjbQ, yjbR, uvrA, ssb, b4060, yjcC, soxS, soxR, yjcD, yjcE, yjcF, yjcG, yjcH, acs, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, gltP, yjcO, fdhF, b4560, yjcP, yjcQ, yjcR, b4561, yjcS, yjcT, yjcU, yjcV, yjcW, yjcX, b4089, rpiB, phnQ, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, b4103, phnE, phnD, phnC, phnB, phnA, yjdA, b4110, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, yjdG, yjdH, yjdI, yjdJ, yjdK, lysU, yjdL, cadA, cadB, cadC, pheU, yjdC, dsbD, cutA, dcuA, b4139, yjeG, b4140, yjeH, mopB, mopA, yjeI, yjeJ, yjeK, efp, b4147.1n, b4148, blc, ampC, frdD, frdC, frdB, frdA, yjeA, yjeM, yjeN, yjeO, yjeP, psd, b4161, b4162, glyV, glyX, glyY, yjeS, yjeF, yjeE, amiB, mutL, miaA, hfq, hflX, hflK, hflC, yjeT, purA, yjeB, b4179, yjfH, yjfI, yjfJ, yjfK, yjfL, yjfM, yjfC, b4187, b4188, b4189, yjfP, yjfQ, yjfR, b4193, sgaB, ptxA, sgaH, sgaU, sgaE, yjfY, rpsF, priB, rpsR, rplI, yjfZ, ytfA, ytfB, b4207, cycA, ytfE, ytfF, ytfG, b4212, cpdB, cysQ, ytfI, ytfJ, ytfK, ytfL, msrA, ytfM, ytfN, ytfP, yjfA, chpS, chpB, ppa, ytfQ, ytfR, ytfS, ytfT, yjfF, fbp, yjfG, yjgA, pmbA, b4236, nrdG, nrdD, treC, treB, treR, mgtA, yjgF, pyrI, pyrB, pyrL, yjgG, yjgH, yjgI, b4251, b4250, b4252, yjgL, argI, yjgD, b4256, yjgN, valS, holC, pepA, yjgP, b4262, yjgR, idnR, idnT, idnO, idnD, idnK, b4269, leuX, intB, yi216, yi226, yjgX, yjgY, yjgZ, yi41, b4279, yjhC, yjhD, yjhE, b4283, tra83, b4562, b4285, b4286, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA7, yjhU, yjhF, yjhG, b4298, yjhI, sgcR, sgcE, sgcA, sgcQ, sgcC, b4567, sgcX, yjhP, yjhQ, yjhR, yjhS, b4310, yjhA, fimB, fimE, fimA, fimI, b4316, fimD, fimF, fimG, fimH, gntP, uxuA, uxuB, uxuR, b4325, b4326, yjiE, iadA, yjiG, yjiH, b4331, yjiJ, yjiK, b4563, yjiL, yjiM, yjiN, yjiO, yjiP, yjiQ, yjiR, yjiS, yjiT, yjiU, mcrD, mcrC, mcrB, yjiW, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, yjiY, tsr, yjiZ, yjjM, yjjN, mdoB, yjjA, dnaC, dnaT, yjjB, yjjP, yjjQ, bglJ, fhuF, leuV, leuP, leuQ, yjjT, holD, rimI, yjjG, prfC, osmY, yjjU, yjjV, yjjW, yjjI, deoC, deoA, deoB, deoD, yjjJ, lplA, smp, serB, sms, nadR, yjjK, slt, trpR, yjjX, gpmB, rob, creA, creB, creC, creD, arcA, yjjY, lasT |
|
| 4,103,519 | +T | 100% | 100% | intergenic (‑268/‑530) | cpxR ← / → yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| 4,111,822 | T→C | 100% | 98.7% | P77P (CCA→CCG) | fpr ← | ferredoxin‑NADP reductase |
| 4,139,669 | +C | 100% | 100% | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
| 4,146,144 | T→C | ? | 54.4% | T567T (ACA→ACG) | yijP ← | hypothetical protein |
| 4,149,965 | A→G | 100% | 100% | V238A (GTC→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| 4,154,554 | Δ1 bp | 100% | 98.2% | coding (126/1374 nt) | argH → | argininosuccinate lyase |
| 4,158,827 | G→T | 100% | 99.7% | G61V (GGC→GTC) | yijC → | hypothetical protein |
| 4,161,702 | C→G | 100% | 100% | A162G (GCA→GGA) | btuB → | BtuB |
| 4,172,702 | A→G | 100% | 100% | intergenic (‑97/+90) | coaA ← / ← b3975 | pantothenate kinase/hypothetical protein |
| 4,175,949 | +G | 100% | 100% | intergenic (+82/‑76) | nusG → / → rplK | NusG/50S ribosomal subunit protein L11 |
| 4,177,348 | A→G | 100% | 99.1% | intergenic (+187/‑226) | rplA → / → rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| 4,182,613 | A→G | 56.8% | Q1264R (CAG→CGG) | rpoB → | RNA polymerase beta subunit | |
| 4,185,074 | A→T | 100% | 99.3% | Q716L (CAG→CTG) | rpoC → | RNA polymerase beta prime subunit |
| 4,193,274 | A→G | 50.9% | V135A (GTA→GCA) | thiC ← | ThiC | |
| 4,194,577 | 2 bp→GC | 100% | 100% | coding (97‑98/774 nt) | yjaD → | hypothetical protein |
| 4,201,880 | A→G | 100% | 99.1% | Q328R (CAG→CGG) | hydG → | HydG |
| 4,215,575 | A→G | 100% | 100% | E296E (GAA→GAG) | aceA → | isocitrate lyase |
| 4,222,792 | C→T | 100% | 99.6% | G462G (GGC→GGT) | metH → | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
| 4,230,115 | A→G | 67.9% | V233A (GTA→GCA) | lysC ← | aspartokinase III | |
| 4,253,662 | C→T | 100% | 99.6% | M128I (ATG→ATA) | plsB ← | glycerol‑3‑phosphate acyltransferase |
| 4,266,879 | A→G | 72.3% | intergenic (+993/‑114) | tyrB → / → aphA | tyrosine aminotransferase/diadenosine tetraphosphatase | |
| 4,272,173 | A→G | 100% | 98.8% | Q157R (CAG→CGG) | ssb → | ssDNA‑binding protein |
| 4,276,490 | A→G | 100% | 100% | T145A (ACG→GCG) | yjcD → | hypothetical protein |
| 4,280,469 | T→C | 100% | 100% | I62M (ATA→ATG) | yjcF ← | hypothetical protein |
| 4,281,296 | C→T | 100% | 98.3% | A396T (GCG→ACG) | yjcG ← | putative transport protein |
| 4,293,960 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate‑aspartate symport protein/hypothetical protein | |
| 4,295,081 | T→C | 100% | 99.2% | D622G (GAT→GGT) | fdhF ← | selenopolypeptide subunit of formate dehydrogenase H |
| 4,302,330 | A→G | 100% | 99.3% | V620A (GTG→GCG) | yjcS ← | hypothetical protein |
| 4,311,496 | +C | 100% | 100% | coding (301/408 nt) | phnQ ← | hypothetical protein |
| 4,316,203 | T→A | 100% | 100% | Q47L (CAG→CTG) | phnK ← | ATP‑binding component of phosphonate transport |
| 4,326,590 | A→G | 100% | 99.0% | G626G (GGA→GGG) | yjdA → | putative vimentin |
| 4,337,864 | A→G | 100% | 100% | L80P (CTT→CCT) | adiA ← | biodegradative arginine decarboxylase |
| 4,355,838 | T→C | 100% | 99.7% | T120A (ACC→GCC) | cadA ← | lysine decarboxylase 1 |
| 4,364,726 | T→C | 57.7% | I394V (ATC→GTC) | b4139 ← | aspartate ammonia‑lyase | |
| 4,384,262 | T→C | 56.3% | E896G (GAG→GGG) | yjeP ← | putative periplasmic binding protein | |
| 4,426,466 | T→C | 66.8% | intergenic (‑135/‑47) | ytfB ← / → b4207 | hypothetical protein/FKBP‑type 22KD peptidyl‑prolyl cis‑trans isomerase (rotamase) | |
| 4,435,684 | +A | 100% | 100% | coding (400/501 nt) | ytfI → | hypothetical protein |
| 4,437,156 | A→G | 53.8% | E11G (GAG→GGG) | ytfK → | hypothetical protein | |
| 4,439,829 | T→C | 100% | 98.8% | intergenic (‑76/‑130) | msrA ← / → ytfM | peptide methionine sulfoxide reductase/hypothetical protein |
| 4,441,820 | A→G | 100% | 99.5% | P44P (CCA→CCG) | ytfN → | hypothetical protein |
| 4,448,541 | +C | 100% | intergenic (+46/‑92) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR | |
| 4,448,541 | 2 bp→CC | 100% | intergenic (+46/‑91) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR | |
| 4,448,543 | +C | 100% | intergenic (+48/‑90) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR | |
| 4,449,738 | +G | 100% | 100% | coding (1106/1254 nt) | ytfR → | YtfR |
| 4,472,408 | A→G | 100% | 100% | intergenic (+117/‑28) | b4251 → / → b4252 | hypothetical protein/hypothetical protein |
| 4,474,826 | +A | 100% | 100% | intergenic (+1/+44) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,848 | +GTATTT | 100% | intergenic (+23/+22) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 | |
| 4,474,849 | 20 bp→30 bp | 100% | intergenic (+24/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 | |
| 4,474,850 | +CG | ? | 100% | intergenic (+25/+20) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,857 | +T | ? | 100% | intergenic (+32/+13) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,866 | Δ1 bp | ? | 100% | intergenic (+41/+4) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| 4,474,868 | +CA | 100% | intergenic (+43/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 | |
| 4,477,041 | Δ1 bp | 100% | 100% | intergenic (‑151/‑269) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| 4,477,068 | +C | 100% | 100% | intergenic (‑178/‑242) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| 4,477,281 | Δ1 bp | 100% | 100% | intergenic (‑391/‑29) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| 4,477,321 | Δ1 bp | 100% | 100% | coding (12/1182 nt) | yjgN → | hypothetical protein |
| 4,478,503 | (A)7→6 | 100% | 100% | intergenic (+12/+47) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| 4,478,511 | Δ1 bp | 100% | 100% | intergenic (+20/+39) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| 4,478,527 | Δ1 bp | 100% | 100% | intergenic (+36/+23) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| 4,484,334 | A→G | 100% | 100% | A183A (GCA→GCG) | yjgP → | hypothetical protein |
| 4,500,500 | A→G | 100% | 99.2% | V167A (GTC→GCC) | yi41 ← | IS4 hypothetical protein |
| 4,525,836 | T→C | 100% | 98.7% | N217S (AAC→AGC) | sgcQ ← | putative nucleoside triphosphatase |
| 4,529,882 | A→G | 52.4% | intergenic (‑663/+123) | sgcX ← / ← yjhP | putative lyase/synthase/putative methyltransferase | |
| 4,542,643 | Δ1 bp | 100% | 100% | intergenic (+46/‑22) | b4316 → / → fimD | Pil/FimD |
| 4,543,743 | T→C | ? | 52.6% | V360A (GTA→GCA) | fimD → | FimD |
| 4,544,170 | T→C | 100% | 100% | I502I (ATT→ATC) | fimD → | FimD |
| 4,550,462 | A→G | 100% | 98.8% | intergenic (+73/‑8) | uxuA → / → uxuB | mannonate hydrolase/D‑mannonate oxidoreductase |
| 4,557,351 | T→C | 100% | 97.4% | L73L (TTA→TTG) | yjiG ← | hypothetical protein |
| 4,562,252 | A→G | 100% | 99.1% | Y5H (TAT→CAT) | yjiL ← | hypothetical protein |
| 4,573,190 | Δ1 bp | 100% | 100% | coding (1487/1542 nt) | yjiU → | hypothetical protein |
| 4,574,258 | A→G | 100% | 97.5% | M355V (ATG→GTG) | mcrD → | McrD |
| 4,583,050 | G→A | 100% | 100% | Q446* (CAA→TAA) | hsdR ← | endonuclease R |
| 4,593,254 | 2 bp→GC | 100% | 100% | coding (59‑60/807 nt) | yjjM ← | hypothetical protein |
| 4,593,336 | +G | 100% | 100% | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
| 4,600,078 | C→T | 100% | 100% | W135* (TGG→TAG) | yjjP ← | putative structural protein |
| 4,608,595 | 2 bp→GC | 100% | 100% | intergenic (+23/‑369) | prfC → / → osmY | peptide chain release factor RF‑3/OsmY |
| 4,614,238 | G→T | 100% | 100% | L133I (CTA→ATA) | yjjI ← | hypothetical protein |
| 4,620,440 | T→C | 100% | 98.6% | M368T (ATG→ACG) | yjjJ → | hypothetical protein |