BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,873,627	Δ1 bp	coding (506/672 nt)	yidX →	putative replicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,873,625	0	G	.	99.6%	2618.2 / ‑0.6	546	coding (504/672 nt)	yidX	putative replicase
Reads supporting (aligned to +/- strand): ref base G (1/1); new base . (294/250); total (295/251)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 592 total aligned reads displayed.

GAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAAC  >  NC_000913/3873530‑3873716

gagaAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCg                                                                                             <  2:10928329/96‑1 (MQ=255)

    aaaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatg                                                                                         <  1:5573653/96‑4 (MQ=255)

     aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatgg                                                                                        >  2:3468826/1‑92 (MQ=255)

     aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatgg                                                                                        <  2:12843597/96‑5 (MQ=255)

       aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtg                                                                                     >  2:13672154/1‑96 (MQ=255)

       aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtg                                                                                     <  2:12966311/96‑1 (MQ=255)

       aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtg                                                                                     <  1:5179372/96‑1 (MQ=255)

        tAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtgt                                                                                    >  2:2730908/1‑96 (MQ=255)

          aaaaCATGGATTACTCTAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGttt                                                                                  <  1:12790132/96‑1 (MQ=255)

            aaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTcc                                                                                >  1:3072677/1‑96 (MQ=255)

              cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgc                                                                              <  2:865353/96‑1 (MQ=255)

              cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgc                                                                              >  1:4222055/1‑96 (MQ=255)

                tGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcag                                                                            <  2:9531145/96‑1 (MQ=255)

                 ggATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagc                                                                           <  1:2043721/96‑1 (MQ=255)

                  gATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagca                                                                          <  2:7071240/96‑1 (MQ=255)

                  gATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcagca                                                                          >  1:3488218/1‑96 (MQ=255)

                    ttACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAtt                                                                        <  2:5966368/96‑1 (MQ=255)

                    ttACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCAtt                                                                        <  1:1764148/96‑1 (MQ=255)

                     tACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTa                                                                       >  1:9684587/1‑96 (MQ=255)

                      aCTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAc                                                                      >  1:7419955/1‑96 (MQ=255)

                      aCTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAc                                                                      >  1:13315042/1‑96 (MQ=255)

                       cTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACt                                                                     <  2:2486444/96‑1 (MQ=255)

                       cTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACt                                                                     >  2:14189349/1‑96 (MQ=255)

                        tCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTg                                                                    >  1:10351505/1‑96 (MQ=255)

                         cAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGc                                                                   >  2:76227/1‑96 (MQ=255)

                         cAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGc                                                                   <  1:2294270/96‑1 (MQ=255)

                          aaaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGcc                                                                  >  1:12602509/1‑96 (MQ=255)

                           aaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCa                                                                 >  1:332073/1‑96 (MQ=255)

                             ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCCCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGt                                                               <  1:4543722/96‑1 (MQ=255)

                              gTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTg                                                              <  1:11513561/96‑1 (MQ=255)

                               tGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGa                                                             <  2:1626531/96‑1 (MQ=255)

                               tGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATT‑CGGGATGGTGTTTCCGCAGCATTACTGCCAGTGa                                                             >  1:136867/1‑96 (MQ=255)

                                gATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGAc                                                            >  2:1166314/1‑96 (MQ=255)

                                 aTGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACt                                                           <  1:2744240/96‑1 (MQ=255)

                                  tGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTg                                                          >  1:5912718/1‑96 (MQ=255)

                                   ggCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                         <  1:6148668/96‑1 (MQ=255)

                                    gCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGtt                                                        <  1:9774338/96‑1 (MQ=255)

                                    gCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGtt                                                        <  2:1867607/96‑1 (MQ=255)

                                      gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTAc                                                      <  2:7191666/96‑1 (MQ=255)

                                       ttCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACg                                                     <  2:2281927/96‑1 (MQ=255)

                                       ttCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACg                                                     <  1:13090158/96‑1 (MQ=255)

                                         cTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGGGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCt                                                   >  2:6868215/1‑96 (MQ=255)

                                          tACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                                  <  2:5342677/96‑1 (MQ=255)

                                          tACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                                  <  2:4153606/96‑1 (MQ=255)

                                          tACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                                  >  1:8792792/1‑96 (MQ=255)

                                             catccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc                                               >  1:2383624/1‑96 (MQ=255)

                                              atccatTTAAAGGGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGGTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAca                                              >  1:11354139/1‑96 (MQ=255)

                                               tccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcat                                             <  1:6599871/96‑1 (MQ=255)

                                                ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatc                                            <  2:1270808/96‑1 (MQ=255)

                                                  atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                          >  1:8536921/1‑96 (MQ=255)

                                                  atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                          >  2:811685/1‑96 (MQ=255)

                                                  atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                          >  2:12537147/1‑96 (MQ=255)

                                                    ttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTa                                        <  1:3770901/96‑1 (MQ=255)

                                                     tAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAc                                       <  2:4843800/96‑1 (MQ=255)

                                                     tAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAc                                       >  2:13881019/1‑96 (MQ=255)

                                                      aaaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACt                                      <  2:12027210/96‑1 (MQ=255)

                                                       aaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTg                                     >  1:7248983/1‑96 (MQ=255)

                                                        aGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGc                                    <  1:1400660/96‑1 (MQ=255)

                                                        aGTGCGATTTCATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGc                                    <  2:10724932/96‑1 (MQ=255)

                                                          tGCGATTTTATGAATACTATTCAACCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc                                  <  1:12273572/96‑1 (MQ=255)

                                                           gCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAcc                                 >  1:8045574/1‑96 (MQ=255)

                                                            cGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCg                                <  2:12377906/96‑1 (MQ=255)

                                                             gATTTTATGAATATTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGc                               >  1:13411551/1‑96 (MQ=255)

                                                              aTTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCt                              <  2:4661036/96‑1 (MQ=255)

                                                              aTTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCt                              >  2:7507210/1‑96 (MQ=255)

                                                               ttttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                             <  1:7684358/96‑1 (MQ=255)

                                                                      aaTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTATTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc                      <  2:10311930/96‑1 (MQ=255)

                                                                      aaTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc                      >  2:3322779/1‑96 (MQ=255)

                                                                       aTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCt                     <  1:1166314/96‑1 (MQ=255)

                                                                       aTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCt                     <  1:9167133/96‑1 (MQ=255)

                                                                       aTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCt                     >  2:5722348/1‑96 (MQ=255)

                                                                        tACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATTATTACTGCACCGCTGCAATTTCTg                    <  2:9274871/96‑1 (MQ=255)

                                                                         aCTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                   >  2:8839037/1‑96 (MQ=255)

                                                                         aCTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                   <  1:9861569/96‑1 (MQ=255)

                                                                          cTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGt                  >  2:14351496/1‑96 (MQ=255)

                                                                           tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt                 >  1:8991478/1‑96 (MQ=255)

                                                                           tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt                 >  1:7836646/1‑96 (MQ=255)

                                                                           tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt                 <  2:6340191/96‑1 (MQ=255)

                                                                           tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt                 <  2:8963334/96‑1 (MQ=255)

                                                                           tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt                 >  2:11509467/1‑96 (MQ=255)

                                                                            aTTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTg                >  2:9754148/1‑96 (MQ=255)

                                                                            aTTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTg                >  2:3807334/1‑96 (MQ=255)

                                                                               cgcccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat             <  1:4981275/94‑1 (MQ=255)

                                                                                aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtata            <  2:2918961/96‑1 (MQ=255)

                                                                                aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtata            >  1:14315480/1‑96 (MQ=255)

                                                                                aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGGGACTGTTACGCTGGACATCATTACTGCACCGCAGCAATGTCTGGTGGtata            >  1:5314985/1‑96 (MQ=255)

                                                                                 cccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTatat           >  1:10027567/1‑96 (MQ=255)

                                                                                 cccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTatat           >  1:256932/1‑96 (MQ=255)

                                                                                  ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAATGCCAGAGAATGTTACGCTGGACATCATTAATGCAGCGATGAAATTTCTGGTTGTATATg          >  1:6732963/1‑96 (MQ=255)

                                                                                   cAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGc         <  2:3072677/96‑1 (MQ=255)

                                                                                    agagGCATTCC‑GGATGGTGTTTCCGCAGCGTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCa        >  1:12056277/1‑96 (MQ=255)

                                                                                    agagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCa        >  1:8270687/1‑96 (MQ=255)

                                                                                     gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAg       <  1:9413462/96‑1 (MQ=255)

                                                                                      agGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCatt      <  1:10718902/96‑3 (MQ=255)

                                                                                      agGCATTCC‑GGATGGTGTTTCAGCAGCATTCCTGCCAGTGCCTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTAGATGCAGt      <  1:1023679/96‑1 (MQ=255)

                                                                                       ggCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTa     >  2:7938525/1‑96 (MQ=255)

                                                                                        gCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa    <  1:6426000/96‑1 (MQ=255)

                                                                                        gCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa    <  2:13171059/96‑1 (MQ=255)

                                                                                         cATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaaa   <  2:6658926/96‑1 (MQ=255)

                                                                                         cATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaaa   >  1:10786424/1‑96 (MQ=255)

GAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAAC  >  NC_000913/3873530‑3873716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`