Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,941,734 Δ1 bp noncoding (409/2906 nt) rrlC → 23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,941,7340A.100.0% 420.3 / NA 242noncoding (409/2906 nt)rrlC23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (132/110);  total (132/110)

Only 100 of 272 total aligned reads displayed.

CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGAT  >  NC_000913/3941641‑3941774
                                                                                             |                                        
cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggg                                        <  1:5238394/96‑1 (MQ=18)
cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggg                                        <  2:10781737/96‑1 (MQ=18)
cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggg                                        <  2:1265419/96‑1 (MQ=18)
cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgcgaat                                        <  1:11349257/96‑3 (MQ=255)
 gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggga                                       >  2:4437051/1‑95 (MQ=17)
 gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggga                                       >  2:6455560/1‑95 (MQ=21)
 gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggga                                       <  2:7435713/96‑2 (MQ=17)
 gcgATACAGGGTGACAGCCCCGGACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggga                                       >  1:3766878/1‑95 (MQ=12)
  ctaTACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAc                                     >  1:10805846/3‑96 (MQ=9)
  cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAc                                     >  1:12751/1‑96 (MQ=16)
  cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAc                                     >  1:1364117/1‑96 (MQ=16)
  cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAc                                     <  1:8405243/96‑1 (MQ=9)
   gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAcc                                    >  2:1665308/1‑96 (MQ=16)
   gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAcc                                    >  2:11070614/1‑96 (MQ=12)
   gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGGAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGAcc                                    >  2:2110922/1‑96 (MQ=255)
   gATACAGGGTGACAGCCCCGTACACAAAAATGCAAATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGAATCCTGTCTGAATATGGGGGGAcc                                    >  1:11875282/1‑96 (MQ=11)
    agaCAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCa                                   >  1:12056111/3‑96 (MQ=12)
    aTACAGGGTGACAGCCCCGTACACAAAAATGCACATATTTTGAGCTCGATGAGTAGGGCGGGACACGTGGGATCCTGTCTGAATATGGGGGGACCa                                   >  1:6169428/1‑96 (MQ=11)
    aTACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGAATCCTGTCTGAATATGGGGGGACCa                                   >  2:13297288/1‑96 (MQ=255)
     tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAt                                  >  1:5982775/1‑96 (MQ=12)
      aCAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtc                                 <  1:13500527/96‑1 (MQ=9)
      aCAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtc                                 <  2:641670/96‑1 (MQ=9)
       cAGGGGGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGTTGAGTAGGGCGGGACACGGGGTATCCTGTCTGAATATGGGTGGGCCAtcc                                >  2:11893087/1‑96 (MQ=11)
        aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcct                               <  1:4137243/96‑1 (MQ=9)
        aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcct                               <  2:1578857/96‑1 (MQ=9)
        aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcct                               >  2:9037379/1‑96 (MQ=9)
         gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcctc                              >  1:9963583/1‑96 (MQ=12)
         gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcctc                              <  2:3423878/96‑1 (MQ=9)
          ggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcctcc                             <  2:13806393/96‑1 (MQ=9)
          ggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAtcctcc                             >  2:12282027/1‑96 (MQ=9)
           ttGACAGCCCCGTACACAAAAATGCACATATTGGGAGCTCGATGAGTAGGGTGGGACGCGTGGTATCCTGTCTGAATATGTGTGGACCATCCTCCa                            >  1:8852850/2‑96 (MQ=11)
             gACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAg                          <  1:1178137/96‑1 (MQ=9)
             gACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAg                          >  1:4626687/1‑96 (MQ=9)
             gACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAg                          >  2:852605/1‑96 (MQ=9)
             gACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAg                          >  2:2072447/1‑96 (MQ=9)
             gACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAg                          <  2:242609/96‑1 (MQ=9)
              aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAgg                         <  1:4244190/96‑1 (MQ=9)
              aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAgg                         <  2:6929089/96‑1 (MQ=9)
              aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAgg                         <  1:640542/96‑1 (MQ=9)
               cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGc                        >  1:3274539/1‑96 (MQ=9)
                aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCt                       >  1:5040228/1‑96 (MQ=9)
                aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCt                       <  1:8686799/96‑1 (MQ=9)
                aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCt                       <  2:4013355/96‑1 (MQ=9)
                 gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCACGGCTa                      >  2:3490108/1‑96 (MQ=9)
                 gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTa                      <  1:2126225/96‑1 (MQ=9)
                 gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTa                      >  2:2944447/1‑96 (MQ=16)
                  ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaa                     <  1:10037723/96‑1 (MQ=9)
                  ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaa                     >  1:12633368/1‑96 (MQ=16)
                  ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGGAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaa                     >  2:4726309/1‑96 (MQ=9)
                   cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaaa                    >  2:11346440/1‑96 (MQ=16)
                   cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaaa                    >  2:3833065/1‑96 (MQ=12)
                   cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaaa                    >  1:2528234/1‑96 (MQ=9)
                   cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTaaa                    <  1:5112083/96‑1 (MQ=9)
                    ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAAt                   >  2:8010690/1‑96 (MQ=16)
                    ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAAt                   <  1:13225980/96‑1 (MQ=9)
                    ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAAt                   >  1:830339/1‑96 (MQ=9)
                    ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAAt                   >  1:7756361/1‑96 (MQ=16)
                     cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATa                  <  2:825227/96‑1 (MQ=9)
                     cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATa                  >  2:9800052/1‑96 (MQ=9)
                     cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATa                  >  1:14147112/1‑96 (MQ=16)
                      gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATAc                 <  2:9157100/96‑1 (MQ=9)
                      gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATAc                 >  1:1837786/1‑96 (MQ=16)
                      gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATAc                 >  1:5725680/1‑96 (MQ=16)
                       tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATAcg                >  1:900880/1‑95 (MQ=9)
                       tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACt                <  2:11537862/96‑1 (MQ=9)
                       tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACt                >  2:6070782/1‑96 (MQ=12)
                       tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACt                <  1:359177/96‑1 (MQ=9)
                       tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGCACCATCCTCCAAGGCTAAATACt                >  1:10108191/1‑96 (MQ=255)
                       tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGAACCATCCTCCAAGGCTAAATACt                >  1:12467077/1‑96 (MQ=9)
                        acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTc               <  2:7818344/96‑1 (MQ=9)
                        acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTAAATATGGGGGGACCATCCTCCAAGGCTAAATAccc               <  1:11092785/96‑3 (MQ=11)
                         cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTcc              >  2:6327412/1‑96 (MQ=9)
                         cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTcc              >  1:9422796/1‑96 (MQ=12)
                         cacaAAAATGAACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTcc              <  1:1230667/96‑1 (MQ=9)
                          acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCct             <  1:7204821/96‑1 (MQ=9)
                          acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCct             >  2:7343701/1‑96 (MQ=9)
                          acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCct             >  2:75272/1‑96 (MQ=12)
                           caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctg            <  1:1354739/96‑1 (MQ=9)
                           caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctg            >  2:4613649/1‑96 (MQ=16)
                            aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctga           >  2:10058630/1‑96 (MQ=9)
                            aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGGCTGAATATGGGGGGGCCATCCTCCAAGGCTAAATACTCctga           >  1:14262404/1‑96 (MQ=11)
                             aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgac          >  2:7098856/1‑96 (MQ=9)
                             aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgac          <  1:5457396/96‑1 (MQ=9)
                             aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgac          <  1:679834/96‑1 (MQ=9)
                              aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgact         <  2:10657015/96‑1 (MQ=9)
                              aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgact         <  2:12056111/96‑1 (MQ=9)
                              aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgact         >  1:14035190/1‑96 (MQ=9)
                              aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgact         >  2:598139/1‑96 (MQ=9)
                              aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgact         >  2:5483524/1‑96 (MQ=9)
                              aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgact         <  1:7899414/96‑1 (MQ=9)
                                aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgactga       <  2:5642597/96‑1 (MQ=9)
                                aTGCACACATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCctgactga       <  1:2776340/96‑1 (MQ=9)
                                 tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCtgactgac      <  2:10516786/96‑1 (MQ=9)
                                 tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCtgactgac      <  1:3962832/96‑1 (MQ=9)
                                 tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCtgactgac      >  2:9390230/1‑96 (MQ=9)
                                  gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGAcc     >  1:13996282/1‑96 (MQ=9)
                                  gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGAcc     >  2:14249336/1‑96 (MQ=9)
                                  gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGAcc     >  1:1041378/1‑96 (MQ=9)
                                    acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGa   >  2:1949255/1‑96 (MQ=9)
                                     caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGAt  <  2:12837792/96‑1 (MQ=0)
                                                                                             |                                        
CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGAT  >  NC_000913/3941641‑3941774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: