Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,542,643 Δ1 bp intergenic (+46/‑22) b4316 → / → fimD Pil/FimD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,542,6400G.97.7% 2010.9 / 27.8 439intergenic (+43/‑25)b4316/fimDPil/FimD
Reads supporting (aligned to +/- strand):  ref base G (10/0);  new base . (193/235);  total (204/235)
Fisher's exact test for biased strand distribution p-value = 4.05e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

Only 100 of 472 total aligned reads displayed.

CAATAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTT  >  NC_000913/4542545‑4542731
                                                                                               |                                                                                           
cAATAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCg                                                                                             <  1:8259481/96‑1 (MQ=255)
 aaTAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgg                                                                                            <  1:13705421/96‑1 (MQ=255)
    aaaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtg                                                                                         <  2:189037/96‑3 (MQ=255)
       tGATTATGGCGCACTTCCCCCAGAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGAtt                                                                                     <  1:4536299/96‑1 (MQ=255)
       tGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGAtt                                                                                     >  2:2332460/1‑96 (MQ=255)
        gATTATGTCGCACTTACCCCCAAGATGACGGGCGTAATGGAATAACGCAGGAGGGATTTTTCGCCTGAATAAAAAGAATTGACTGCCGTGTGAttt                                                                                    >  1:4623146/1‑96 (MQ=255)
        gATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGAttc                                                                                    <  1:11407350/96‑2 (MQ=255)
         agtATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGAtttt                                                                                   >  1:9001130/3‑96 (MQ=255)
         aTTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGAtttt                                                                                   >  2:4837617/1‑96 (MQ=255)
          ttATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTa                                                                                  >  2:8990136/1‑96 (MQ=255)
          ttATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTa                                                                                  >  2:12148809/1‑96 (MQ=255)
          tgaTGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCATGAATAAAAAGAATTGACTGCCGGGTGATTTTa                                                                                  <  1:14356954/94‑1 (MQ=255)
           tATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTaa                                                                                 >  1:11066807/1‑96 (MQ=255)
           tATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTaa                                                                                 >  1:4279781/1‑96 (MQ=255)
            aTGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAg                                                                                <  1:5590153/96‑1 (MQ=255)
               gcgcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCg                                                                             <  1:10027489/96‑1 (MQ=255)
                cgcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCgg                                                                            >  1:12237516/1‑96 (MQ=255)
                cgcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCgg                                                                            >  2:1652210/1‑96 (MQ=255)
                cgcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCgg                                                                            <  2:4085997/96‑1 (MQ=255)
                cgcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCgg                                                                            >  1:4235951/1‑96 (MQ=255)
                 gcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCgga                                                                           >  2:7252276/1‑96 (MQ=255)
                 gcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCgga                                                                           >  2:7072875/1‑96 (MQ=255)
                  cACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCggag                                                                          <  2:10908399/96‑1 (MQ=255)
                  cACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCggag                                                                          <  2:5871538/96‑1 (MQ=255)
                  cACTTACCCCCAAAATGACCGGCGTAATGGAATAACGCAGCGGGAATTTATCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCggag                                                                          <  1:1277999/96‑1 (MQ=255)
                   aCTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCggagg                                                                         <  1:4972823/96‑1 (MQ=255)
                     ttACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGaa                                                                       >  1:2115123/1‑96 (MQ=255)
                          cccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATg                                                                  >  2:13435396/1‑96 (MQ=255)
                          cccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATg                                                                  <  1:1858589/96‑1 (MQ=255)
                           ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGt                                                                 <  1:6742163/96‑1 (MQ=255)
                           ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGt                                                                 <  1:6201923/96‑1 (MQ=255)
                            cAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTc                                                                >  2:39055/1‑96 (MQ=255)
                             aaaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCa                                                               >  1:9556833/1‑96 (MQ=255)
                             aaaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCa                                                               <  1:2403544/96‑1 (MQ=255)
                              aaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCat                                                              <  2:7805284/96‑1 (MQ=255)
                              aaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCat                                                              >  1:1246797/1‑96 (MQ=255)
                                aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTTAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCatat                                                            <  2:8780187/96‑1 (MQ=255)
                                aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCatat                                                            <  2:306129/96‑1 (MQ=255)
                                 tGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATc                                                           <  2:6785911/96‑1 (MQ=255)
                                 tGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATc                                                           >  1:8008745/1‑96 (MQ=255)
                                  gACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCt                                                          >  1:8663912/1‑96 (MQ=255)
                                  gACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCt                                                          <  1:10341494/96‑1 (MQ=255)
                                   aCGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTg                                                         <  1:2775704/96‑1 (MQ=255)
                                   aCGAGCGTAATGGAATAACGCAGGGGGAATGTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATcag                                                         <  1:11144649/96‑3 (MQ=255)
                                      ggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAt                                                      >  1:6415354/1‑96 (MQ=255)
                                        cGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAttt                                                    >  1:3186086/1‑96 (MQ=255)
                                        cGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAttt                                                    >  2:3239663/1‑96 (MQ=255)
                                         gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTa                                                   >  2:6346170/1‑96 (MQ=255)
                                         gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTa                                                   <  2:9769149/96‑1 (MQ=255)
                                         gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTa                                                   <  1:11914502/96‑1 (MQ=255)
                                           aaTGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAg                                                 >  1:9217702/1‑96 (MQ=255)
                                           aaTGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAg                                                 <  2:14276254/96‑1 (MQ=255)
                                            aTGGAATAACGCAGGGGTAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa                                                <  2:1795690/96‑1 (MQ=255)
                                             tGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAc                                               <  1:6534966/96‑1 (MQ=255)
                                             tGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAc                                               <  1:12105891/96‑1 (MQ=255)
                                             tGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAc                                               >  1:7810309/1‑96 (MQ=255)
                                               gAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACtt                                             <  1:5253325/96‑1 (MQ=255)
                                               gAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACtt                                             >  2:4698028/1‑96 (MQ=255)
                                                aaTAACGCAGGGGGAATTTTTCTCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACttt                                            <  2:11917874/96‑1 (MQ=255)
                                                 aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTa                                           >  2:7407604/1‑96 (MQ=255)
                                                 aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTa                                           <  1:7080246/96‑1 (MQ=255)
                                                    aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCa                                        <  2:5284186/96‑1 (MQ=255)
                                                     cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg                                       <  1:3633676/96‑1 (MQ=255)
                                                      gCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGc                                      >  1:5968736/1‑96 (MQ=255)
                                                      gCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGc                                      <  2:7913967/96‑1 (MQ=255)
                                                        aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATCATGTCATATCTGAATTTAAGACTTTACCAGCGa                                    <  2:14055498/96‑1 (MQ=255)
                                                        aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa                                    >  1:7608761/1‑96 (MQ=255)
                                                         gggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaa                                   >  2:10677729/1‑96 (MQ=255)
                                                            ggAATTTTTCGCCTGGATAAAAATAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATCTCTGAATTTAAGACTTTACCAGCGAAaca                                <  1:1499771/96‑1 (MQ=255)
                                                            ggAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTATGACTTTACCAGCGAAaca                                >  2:12312128/1‑96 (MQ=255)
                                                            ggAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca                                >  2:9481971/1‑96 (MQ=255)
                                                                tctttCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAAcacaca                            >  1:10792205/3‑96 (MQ=255)
                                                                  tttCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATACTGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAt                          <  2:6206934/96‑1 (MQ=255)
                                                                  tttCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAt                          <  2:2600528/96‑1 (MQ=255)
                                                                  tttCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAt                          <  2:1044451/96‑1 (MQ=255)
                                                                    tCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGc                        >  1:14100810/1‑96 (MQ=255)
                                                                      gCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCtt                      <  2:4279781/96‑1 (MQ=255)
                                                                       ccTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTg                     >  2:10059011/1‑96 (MQ=255)
                                                                        cTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCttcc                    <  1:10588197/96‑3 (MQ=255)
                                                                         tGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCa                   >  2:13286101/1‑96 (MQ=255)
                                                                          gAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCAAATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCat                  <  2:9265208/96‑1 (MQ=255)
                                                                           actAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata                 >  1:13077176/3‑96 (MQ=255)
                                                                           aaTAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata                 <  2:8555418/96‑1 (MQ=255)
                                                                           aaTAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata                 >  2:8138601/1‑96 (MQ=255)
                                                                           aaTAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata                 <  1:2934152/96‑1 (MQ=255)
                                                                            aTAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATATCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCatat                >  2:12877020/1‑96 (MQ=255)
                                                                             tAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAtt               >  2:12595620/1‑96 (MQ=255)
                                                                              aaaaaGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTc              <  2:11066807/96‑1 (MQ=255)
                                                                              aaaaaGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTc              <  2:4519183/96‑1 (MQ=255)
                                                                               aaaaGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCCTATCTTAGTTTAGGACTTTACCAGCGAAACACACAATGCCTGCATATTCg             >  2:5123637/1‑96 (MQ=255)
                                                                               aaaaGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCg             >  1:7314361/1‑96 (MQ=255)
                                                                               aaaaGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCg             >  2:5403364/1‑96 (MQ=255)
                                                                                 aaGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTa           >  1:6928201/1‑96 (MQ=255)
                                                                                   gAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAg         <  1:13934401/96‑1 (MQ=255)
                                                                                   gAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAg         <  2:2783008/96‑1 (MQ=255)
                                                                                    aaTTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGc        <  2:3449227/96‑1 (MQ=255)
                                                                                     aTTGACGGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCa       >  2:11694952/1‑96 (MQ=255)
                                                                                      ttGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt      <  2:11464455/96‑1 (MQ=255)
                                                                                      ttGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt      <  2:13764789/96‑1 (MQ=255)
                                                                                       tGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATc     <  1:9928380/96‑1 (MQ=255)
                                                                                               |                                                                                           
CAATAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTT  >  NC_000913/4542545‑4542731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: