Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,957,092 +CC intergenic (+26/+58) ilvC → / ← ppiC ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,957,0911.C90.0% 554.4 / 66.7 212intergenic (+25/+59)ilvC/ppiCketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
Reads supporting (aligned to +/- strand):  ref base . (1/20);  new base C (16/173);  total (17/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01
*NC_0009133,957,0912.C90.2% 569.7 / 66.7 214intergenic (+25/+59)ilvC/ppiCketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
Reads supporting (aligned to +/- strand):  ref base . (1/20);  new base C (16/177);  total (17/197)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 256 total aligned reads displayed.

CGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT  >  NC_000913/3956996‑3957176
                                                                                                     ||                                                                                        
cGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑a                                                                                            >  2:1961411/1‑96 (MQ=255)
 gATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCGCCCCCCC‑‑A‑‑c                                                                                         >  2:8083086/1‑96 (MQ=255)
  aTTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑cc                                                                                        <  2:2762165/96‑2 (MQ=255)
   ttGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑ccc                                                                                       <  2:2087238/96‑3 (MQ=255)
    tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑ccct                                                                                      <  2:3977183/96‑1 (MQ=255)
     gAGCAGGTAGATAAGAACCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑Ccctc                                                                                     <  1:4831828/96‑1 (MQ=255)
      aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑Ccctct                                                                                    <  2:4474801/96‑2 (MQ=255)
       gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑Ccctctc                                                                                   <  1:8766987/96‑3 (MQ=255)
       gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑Ccctctc                                                                                   <  2:3525693/96‑3 (MQ=255)
       gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑Ccctctc                                                                                   <  1:9516649/96‑3 (MQ=255)
        cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑Ccctctcc                                                                                  <  2:11398005/96‑4 (MQ=255)
            taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCcaca                                                                                <  1:12016995/96‑1 (MQ=38)
                taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCCCaggga                                                                            <  2:13684593/96‑1 (MQ=37)
                taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACaggga                                                                            <  2:11777580/96‑1 (MQ=37)
                 aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACagggag                                                                           <  2:8613534/96‑1 (MQ=37)
                  aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGGGCGCGCTGAT‑‑GCCCTCACCCCG‑‑CCCCTCTCCCACagggaga                                                                          <  2:10773431/96‑1 (MQ=25)
                   gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACagggagag                                                                         <  2:1044413/96‑1 (MQ=37)
                    aaaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTTCCACagggagagg                                                                        <  1:13425585/96‑1 (MQ=37)
                     aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCCCCCCG‑‑ACCCTCTCCCACagggagaggg                                                                       <  2:4732189/96‑1 (MQ=37)
                      aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGGCCCCCCCCCCG‑‑G‑‑CCCCCCCCCccggagaggga                                                                      >  2:3662493/1‑96 (MQ=255)
                       cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCCCCCCG‑‑ACCCCCTCCCACagggggagggag                                                                     >  2:9071258/1‑96 (MQ=25)
                       cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACagggagagggag                                                                     <  1:8651629/96‑1 (MQ=25)
                         gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaa                                                                   <  1:9866845/96‑1 (MQ=25)
                           gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCGCAGGGAGAGGGAGaaaa                                                                 <  1:10967177/96‑1 (MQ=25)
                            cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac                                                                <  2:4084210/96‑1 (MQ=25)
                            cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac                                                                <  1:8413944/96‑1 (MQ=25)
                            cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac                                                                <  1:1942429/96‑1 (MQ=25)
                             ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAacc                                                               <  1:11342862/96‑2 (MQ=21)
                             ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaaaaaa                                                               <  1:11500990/96‑3 (MQ=21)
                             ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAaca                                                               <  2:5943161/96‑1 (MQ=25)
                               cTATATGACAGATATGAAACGTATTGCTGTTGCGGTTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACt                                                             <  1:6027435/96‑1 (MQ=21)
                               cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACt                                                             <  1:4698020/96‑1 (MQ=25)
                                   atGCCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCagg                                                        <  1:3378287/96‑3 (MQ=21)
                                   atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGATAAAACACTCAAg                                                      <  1:1381636/96‑1 (MQ=25)
                                     gACAGATATGAACCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAggc                                                    <  1:5048773/96‑3 (MQ=21)
                                      aCAGATATGAAACGTATTGCTTTTGCGGTTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAggcc                                                   <  2:13483629/96‑4 (MQ=18)
                                       cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAggcct                                                  <  1:10027268/96‑5 (MQ=21)
                                         gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACCCTCAAGGCCTtc                                                 <  1:5095813/96‑1 (MQ=18)
                                         gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc                                                 <  1:13106899/96‑1 (MQ=21)
                                         gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCACCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc                                                 <  1:283668/96‑1 (MQ=21)
                                          atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtct                                                <  2:14345264/96‑1 (MQ=21)
                                          atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCATGGCCTtct                                                <  2:12967849/96‑1 (MQ=18)
                                           tatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctc                                               <  2:8502610/96‑1 (MQ=21)
                                           tatGAAACGCATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACCCTCAAGGCCTtctc                                               <  1:12356093/96‑1 (MQ=18)
                                            atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc                                              <  1:6929304/96‑1 (MQ=21)
                                            atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCACACAGGGAGAGGGAGGAAACACACAAGGCCTTCTcc                                              >  1:13719036/1‑96 (MQ=18)
                                            atGAAACGTATTGCTGTTGCGGGCTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc                                              <  1:10232856/96‑1 (MQ=18)
                                             tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGATGGAGAAAACACTCAAGGCCTTCTCCt                                             <  1:6718646/96‑1 (MQ=21)
                                             tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCt                                             <  1:7758967/96‑1 (MQ=21)
                                             tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCt                                             <  1:11710122/96‑1 (MQ=21)
                                             tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCt                                             <  2:11055060/96‑1 (MQ=21)
                                             tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCt                                             <  1:14431242/96‑1 (MQ=21)
                                               aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTgg                                           <  1:7628982/96‑1 (MQ=21)
                                                aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga                                          <  2:5409470/96‑1 (MQ=21)
                                                 aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgag                                         <  1:2724416/96‑1 (MQ=21)
                                                 aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgag                                         <  2:7331324/96‑1 (MQ=21)
                                                 aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgag                                         <  1:433799/96‑1 (MQ=21)
                                                  cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCGCCCCGTCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgaga                                        <  2:5919851/96‑1 (MQ=18)
                                                   gTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa                                       <  1:9176821/96‑1 (MQ=21)
                                                   gTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa                                       <  2:11130163/96‑1 (MQ=21)
                                                   gTATTGCTGTTGCGGGTTAAGTGAGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACACGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa                                       <  2:10147770/96‑1 (MQ=21)
                                                    tATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAg                                      <  2:6375156/96‑1 (MQ=21)
                                                     aTTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAgg                                     <  1:5822652/96‑1 (MQ=21)
                                                         cTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGGGAAAGAAGTCAAAGCCTTCTCCTGGGGAAGGGCtt                                 >  2:6447007/1‑96 (MQ=17)
                                                         cTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCtt                                 <  2:7814353/96‑1 (MQ=21)
                                                          tGTTGCTGGTTGAGTGCGCCATGAT‑‑GCCCTCACGCCG‑‑ACCCTCGCCCACCGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg                                <  1:5901328/96‑1 (MQ=16)
                                                          tGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg                                <  1:2014705/96‑1 (MQ=21)
                                                           gTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGc                               <  1:2986687/96‑1 (MQ=21)
                                                            ttGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTTGAGAAGGCCTTGCt                              <  1:5473420/96‑1 (MQ=18)
                                                            ttGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt                              <  2:10743413/96‑1 (MQ=21)
                                                             tGCGGGTTAAGTGCGCGCTGAT‑‑GACCTCCCCCCC‑‑ACCCTCTCCCACCGGGGGGGGGGGGAAACACTAAAGGGCTTCTCCCGGAGAAGGCCTTGCTa                             >  2:6878191/1‑96 (MQ=255)
                                                              gCGGGTTAAGTGCGCGCTGAT‑‑GGCCCCACCCCCGCC‑‑CCCTCCCACCCGGAGAGGGAGAGAAAACTCAATGACGTCTCCCGGTGAAGGCCTTggtgt                            >  2:1760206/1‑92 (MQ=255)
                                                              gCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt                            <  1:3662493/96‑1 (MQ=21)
                                                               cGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt                           <  2:5137461/96‑1 (MQ=21)
                                                               cGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt                           <  1:14230554/96‑1 (MQ=21)
                                                               cGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt                           <  1:211763/96‑1 (MQ=21)
                                                                   ttAAGTGCGCGCTGAT‑‑GCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAgct                       <  1:8083086/96‑3 (MQ=18)
                                                                    tAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg                      <  2:1196924/96‑1 (MQ=21)
                                                                     aaGCGCGCGCTGAT‑‑GCCCCCCCCCCG‑‑ACCCTCCCCCCCAGGGAGGGGGAGAACACCCTCAAGGCCTTCCCCTGGAGAAGGCCTTGCTATTAGTTGc                     <  1:3193093/96‑1 (MQ=16)
                                                                       gTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ATCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                   <  1:10790903/96‑1 (MQ=21)
                                                                       gTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                   <  1:10304888/96‑1 (MQ=21)
                                                                       gTGCGCGCTGAT‑‑GCCCTCACCCCC‑‑ACCCTCTCCCACAGGGAGAGGCAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                   >  1:6588627/1‑96 (MQ=21)
                                                                       gTGCGCGCTAAT‑‑GCCCTCACCCCG‑‑ACCCTCTCACAAAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                   <  1:2613476/96‑1 (MQ=21)
                                                                           gcgcTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa               <  1:12822294/96‑1 (MQ=21)
                                                                           gcgcTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa               <  2:1856173/96‑1 (MQ=21)
                                                                            cgcTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCATGGAGAAGGCCTTGCTATTAGTTGCGGTACAg              <  2:13818991/96‑1 (MQ=21)
                                                                              cTGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa            <  2:2740473/96‑1 (MQ=25)
                                                                               tGAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc           <  2:3045391/96‑1 (MQ=25)
                                                                               tGAT‑‑CCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCaa           <  1:8824238/96‑2 (MQ=25)
                                                                                gAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc          <  2:5548035/96‑1 (MQ=25)
                                                                                gAT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc          <  2:6533007/96‑1 (MQ=25)
                                                                                 aT‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt         <  1:1050734/96‑1 (MQ=25)
                                                                                  t‑‑GCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt        <  2:2314957/96‑1 (MQ=25)
                                                                                     gCCCTCACCCCGTCC‑‑CTCCCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCCCCTTa       <  2:3222583/96‑1 (MQ=25)
                                                                                     gCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGATATTAGTTGCGGTACAGCACCtca       <  1:14328024/96‑3 (MQ=25)
                                                                                      cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa      <  2:13277373/96‑1 (MQ=37)
                                                                                       ccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat     <  2:8932591/96‑1 (MQ=37)
                                                                                       ccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat     <  2:9381891/96‑1 (MQ=37)
                                                                                        cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAATACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatg    <  2:12238274/96‑1 (MQ=37)
                                                                                        cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatg    >  1:13317051/1‑96 (MQ=37)
                                                                                                     ||                                                                                        
CGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT  >  NC_000913/3956996‑3957176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: