Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,957,091 | 1 | . | C | 90.0% | 554.4 / 66.7 | 212 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
Reads supporting (aligned to +/- strand): ref base . (1/20); new base C (16/173); total (17/195) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
* | NC_000913 | 3,957,091 | 2 | . | C | 90.2% | 569.7 / 66.7 | 214 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
Reads supporting (aligned to +/- strand): ref base . (1/20); new base C (16/177); total (17/197) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 256 total aligned reads displayed.
CGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > NC_000913/3956996‑3957176 || cGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑a > 2:1961411/1‑96 (MQ=255) gATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCGCC‑CCCCC‑‑A‑‑c > 2:8083086/1‑96 (MQ=255) aTTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑cc < 2:2762165/96‑2 (MQ=255) ttGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑ccc < 2:2087238/96‑3 (MQ=255) tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑ccct < 2:3977183/96‑1 (MQ=255) gAGCAGGTAGATAAGAACCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑Ccctc < 1:4831828/96‑1 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑Ccctct < 2:4474801/96‑2 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑Ccctctc < 1:8766987/96‑3 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑Ccctctc < 2:3525693/96‑3 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑Ccctctc < 1:9516649/96‑3 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑Ccctctcc < 2:11398005/96‑4 (MQ=255) taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCcaca < 1:12016995/96‑1 (MQ=38) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCCCaggga < 2:13684593/96‑1 (MQ=37) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACaggga < 2:11777580/96‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACagggag < 2:8613534/96‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGGGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑CCCCTCTCCCACagggaga < 2:10773431/96‑1 (MQ=25) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACagggagag < 2:1044413/96‑1 (MQ=37) aaaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTTCCACagggagagg < 1:13425585/96‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCC‑CCCCG‑‑ACCCTCTCCCACagggagaggg < 2:4732189/96‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGGCCCCCC‑CCCCG‑‑G‑‑CCCCCCCCCccggagaggga > 2:3662493/1‑96 (MQ=255) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCC‑CCCCG‑‑ACCCCCTCCCACagggggagggag > 2:9071258/1‑96 (MQ=25) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACagggagagggag < 1:8651629/96‑1 (MQ=25) gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaa < 1:9866845/96‑1 (MQ=25) gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCGCAGGGAGAGGGAGaaaa < 1:10967177/96‑1 (MQ=25) cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 2:4084210/96‑1 (MQ=25) cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 1:8413944/96‑1 (MQ=25) cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 1:1942429/96‑1 (MQ=25) ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCC‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAacc < 1:11342862/96‑2 (MQ=21) ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaaaaaa < 1:11500990/96‑3 (MQ=21) ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAaca < 2:5943161/96‑1 (MQ=25) cTATATGACAGATATGAAACGTATTGCTGTTGCGGTTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACt < 1:6027435/96‑1 (MQ=21) cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACt < 1:4698020/96‑1 (MQ=25) atGCCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑agg < 1:3378287/96‑3 (MQ=21) atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGATAAAACACTC‑A‑A‑g < 1:1381636/96‑1 (MQ=25) gACAGATATGAACCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggc < 1:5048773/96‑3 (MQ=21) aCAGATATGAAACGTATTGCTTTTGCGGTTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggcc < 2:13483629/96‑4 (MQ=18) cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggcct < 1:10027268/96‑5 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACCCTC‑A‑AGGCCTtc < 1:5095813/96‑1 (MQ=18) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtc < 1:13106899/96‑1 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCACCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtc < 1:283668/96‑1 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCC‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtct < 2:14345264/96‑1 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑ATG‑GCCTtct < 2:12967849/96‑1 (MQ=18) tatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtctc < 2:8502610/96‑1 (MQ=21) tatGAAACGCATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACCCTC‑A‑AGGCCTtctc < 1:12356093/96‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTcc < 1:6929304/96‑1 (MQ=21) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCACACAGGGAGAGGGAGGAAACACAC‑A‑AGGCCTTCTcc > 1:13719036/1‑96 (MQ=18) atGAAACGTATTGCTGTTGCGGGCTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTcc < 1:10232856/96‑1 (MQ=18) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGATGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 1:6718646/96‑1 (MQ=21) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 1:7758967/96‑1 (MQ=21) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 1:11710122/96‑1 (MQ=21) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 2:11055060/96‑1 (MQ=21) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 1:14431242/96‑1 (MQ=21) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTgg < 1:7628982/96‑1 (MQ=21) aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGga < 2:5409470/96‑1 (MQ=21) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgag < 1:2724416/96‑1 (MQ=21) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgag < 2:7331324/96‑1 (MQ=21) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgag < 1:433799/96‑1 (MQ=21) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCG‑CCCCGTCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgaga < 2:5919851/96‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGaa < 1:9176821/96‑1 (MQ=21) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGaa < 2:11130163/96‑1 (MQ=21) gTATTGCTGTTGCGGGTTAAGTGAGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACACGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGaa < 2:10147770/96‑1 (MQ=21) tATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAg < 2:6375156/96‑1 (MQ=21) aTTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAgg < 1:5822652/96‑1 (MQ=21) cTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGGGAAAGAAGTCAA‑A‑GCCTTCTCCTGGGGAAGGGCtt > 2:6447007/1‑96 (MQ=17) cTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCtt < 2:7814353/96‑1 (MQ=21) tGTTGCTGGTTGAGTGCGCCATGAT‑‑GCCCTCA‑CGCCG‑‑ACCCTCGCCCACCGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTg < 1:5901328/96‑1 (MQ=16) tGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTg < 1:2014705/96‑1 (MQ=21) gTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGc < 1:2986687/96‑1 (MQ=21) ttGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTTGAGAAGGCCTTGCt < 1:5473420/96‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:10743413/96‑1 (MQ=21) tGCGGGTTAAGTGCGCGCTGAT‑‑GACCTCC‑CCCCC‑‑ACCCTCTCCCACCGGGGGGGGGGGGAAACACTA‑A‑AGGGCTTCTCCCGGAGAAGGCCTTGCTa > 2:6878191/1‑96 (MQ=255) gCGGGTTAAGTGCGCGCTGAT‑‑GGCCCCACCCCCGC‑C‑‑CCCTCCCACCCGGAGAGGGAGAGAAAACTC‑A‑ATGACGTCTCCCGGTGAAGGCCTTggtgt > 2:1760206/1‑92 (MQ=255) gCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCC‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 1:3662493/96‑1 (MQ=21) cGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 2:5137461/96‑1 (MQ=21) cGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:14230554/96‑1 (MQ=21) cGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:211763/96‑1 (MQ=21) ttAAGTGCGCGCTGAT‑‑GCCCTCC‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAgct < 1:8083086/96‑3 (MQ=18) tAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 2:1196924/96‑1 (MQ=21) aaGCGCGCGCTGAT‑‑GCCCCCC‑CCCCG‑‑ACCCTCCCCCCCAGGGAGGGGGAGAACACCCTC‑A‑AGGCCTTCCCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:3193093/96‑1 (MQ=16) gTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ATCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:10790903/96‑1 (MQ=21) gTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:10304888/96‑1 (MQ=21) gTGCGCGCTGAT‑‑GCCCTCA‑CCCCC‑‑ACCCTCTCCCACAGGGAGAGGCAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg > 1:6588627/1‑96 (MQ=21) gTGCGCGCTAAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCACAAAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:2613476/96‑1 (MQ=21) gcgcTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:12822294/96‑1 (MQ=21) gcgcTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:1856173/96‑1 (MQ=21) cgcTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCATGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:13818991/96‑1 (MQ=21) cTGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa < 2:2740473/96‑1 (MQ=25) tGAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 2:3045391/96‑1 (MQ=25) tGAT‑‑CCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCaa < 1:8824238/96‑2 (MQ=25) gAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:5548035/96‑1 (MQ=25) gAT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:6533007/96‑1 (MQ=25) aT‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:1050734/96‑1 (MQ=25) t‑‑GCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:2314957/96‑1 (MQ=25) gCCCTCA‑CCCCGTCC‑‑CTCCCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCCCCTTa < 2:3222583/96‑1 (MQ=25) gCCCTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGATATTAGTTGCGGTACAGCACCtca < 1:14328024/96‑3 (MQ=25) cccTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:13277373/96‑1 (MQ=37) ccTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:8932591/96‑1 (MQ=37) ccTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:9381891/96‑1 (MQ=37) cTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAATACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatg < 2:12238274/96‑1 (MQ=37) cTCA‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatg > 1:13317051/1‑96 (MQ=37) || CGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑‑GCCCTCA‑CCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > NC_000913/3956996‑3957176 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |