Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,957,124 +G intergenic (+58/+26) ilvC → / ← ppiC ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,957,1231.G99.0% 1000.2 / 1.8 298intergenic (+57/+27)ilvC/ppiCketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
Reads supporting (aligned to +/- strand):  ref base . (1/2);  new base G (83/212);  total (84/214)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01

Only 100 of 330 total aligned reads displayed.

ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC  >  NC_000913/3957031‑3957213
                                                                                                  |                                                                                          
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGATAAAACACTCAAg                                                                                           <  1:1381636/96‑1 (MQ=25)
 tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGc                                                                                          <  1:8803740/96‑1 (MQ=25)
    cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAggcct                                                                                       <  1:10027268/96‑5 (MQ=21)
      gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc                                                                                      <  2:2325661/96‑1 (MQ=21)
      gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACCCTCAAGGCCTtc                                                                                      <  1:5095813/96‑1 (MQ=18)
       atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtct                                                                                     <  2:4796075/96‑1 (MQ=21)
       atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtct                                                                                     <  2:14345264/96‑1 (MQ=21)
       atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCATGGCCTtct                                                                                     <  2:12967849/96‑1 (MQ=18)
         atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc                                                                                   <  2:12143401/96‑1 (MQ=21)
         atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc                                                                                   <  2:2247237/96‑1 (MQ=21)
         atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CACACAGGGAGAGGGAGGAAACACACAAGGCCTTCTcc                                                                                   >  1:13719036/1‑96 (MQ=18)
          tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGATGGAGAAAACACTCAAGGCCTTCTCCt                                                                                  <  1:6718646/96‑1 (MQ=21)
          tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCt                                                                                  <  1:11710122/96‑1 (MQ=21)
                gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa                                                                            <  2:11130163/96‑1 (MQ=21)
                    tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGcc                                                                        >  1:6891100/1‑96 (MQ=21)
                    tGCTGTTGCGGGTTAAGTGCGCGCTGATCCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGcc                                                                        <  2:2756957/96‑1 (MQ=21)
                      cTGTTGCGGGTTAGGTGCGCGCTGATGCCCCCACCCCGACCCCCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCtt                                                                      <  1:4679065/96‑1 (MQ=18)
                      cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCtt                                                                      <  2:3349773/96‑1 (MQ=21)
                       tGTTGCTGGTTGAGTGCGCCATGATGCCCTCACGCCGACCCTCG‑‑CCCACCGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg                                                                     <  1:5901328/96‑1 (MQ=16)
                          tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTa                                                                  <  2:5735734/96‑1 (MQ=21)
                          tGCGGGTTAAGTGCGCGCTGATGACCTCCCCCCCACCCTCT‑‑CCCACCGGGGGGGGGGGGAAACACTAAAGGGCTTCTCCCGGAGAAGGCCTTGCTa                                                                  >  2:6878191/1‑96 (MQ=255)
                          ggCGGGTTAAGTGCCCGCCCCCCCCCTCCCCCCGC‑‑CCCCCCCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTa                                                                  <  2:6532413/95‑1 (MQ=12)
                           gCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt                                                                 <  1:3662493/96‑1 (MQ=21)
                            cGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt                                                                <  1:14230554/96‑1 (MQ=21)
                            cGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt                                                                <  2:5137461/96‑1 (MQ=21)
                            cGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt                                                                <  1:211763/96‑1 (MQ=21)
                                ttAAGTGCGCGCTGATGCCCTCCCCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAgct                                                            <  1:8083086/96‑3 (MQ=18)
                                 tAAGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg                                                           <  2:1196924/96‑1 (MQ=21)
                                  aaGTGCGCGCTGTTGCATTCACCACGACCCTAT‑‑CCCACAGGGAGAGGGAGACAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtttc                                                          <  1:2981485/96‑3 (MQ=16)
                                   aGTGCGCGCTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg                                                         <  1:1027651/96‑1 (MQ=21)
                                    gTGCGCGCTGATGCCCTCACCCCGATCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                                                        <  1:10790903/96‑1 (MQ=21)
                                    gTGCGCGCTAATGCCCTCACCCCGACCCTCT‑‑CACAAAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                                                        <  1:2613476/96‑1 (MQ=21)
                                       cgcgcTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACCCTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGtcc                                                     <  1:11048137/96‑3 (MQ=18)
                                        gcgcTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa                                                    <  2:1856173/96‑1 (MQ=21)
                                        gcgcTGATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa                                                    <  1:12822294/96‑1 (MQ=21)
                                        gcgcTGATGCCCTCACCCCGACCCTCG‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa                                                    <  1:8387325/96‑1 (MQ=21)
                                           cTGACGCCCTCACCCCGACCCTCC‑‑CCCAGAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAggt                                                 <  1:11305490/96‑3 (MQ=21)
                                            tGAAGCCCTCCCCCCGCCCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc                                                <  1:9882781/96‑1 (MQ=21)
                                             gATGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc                                               <  2:5548035/96‑1 (MQ=25)
                                              aTGCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt                                              <  2:12516809/96‑1 (MQ=25)
                                                gCCCTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGATATTAGTTGCGGTACAGCACCtca                                            <  1:14328024/96‑3 (MQ=25)
                                                  ccTCACCCCGACCCTCT‑‑CCCACAGGGGGAGGGAGAAAACACTCAAGGCCTTCTCCTGGATAAGGCCTTGCTATTAGTTGCGGTACATCACCTTAat                                          >  2:6422639/1‑96 (MQ=25)
                                                  ccTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat                                          <  2:9381891/96‑1 (MQ=37)
                                                   cTCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatg                                         >  1:13317051/1‑96 (MQ=37)
                                                    tCACCCCGACCCTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatga                                        <  1:7462753/96‑1 (MQ=37)
                                                           gaccctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata                                 <  1:10524230/92‑1 (MQ=39)
                                                           gaccctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata                                 <  2:7128924/92‑1 (MQ=39)
                                                            accctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat                                >  2:3063846/4‑96 (MQ=255)
                                                            accctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat                                >  2:1066039/4‑96 (MQ=255)
                                                             ccctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc                               <  2:8775673/94‑1 (MQ=255)
                                                             ccctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGGACAGCACCTTAATGATGTGATATc                               >  1:1870661/3‑96 (MQ=39)
                                                              cctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc                              >  1:6388970/2‑96 (MQ=255)
                                                              cctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc                              >  2:3831738/2‑96 (MQ=255)
                                                               ctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCg                             <  1:9071258/96‑1 (MQ=255)
                                                               ctct‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCg                             <  1:12316600/96‑1 (MQ=255)
                                                                 ct‑‑cCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa                           >  2:4195450/1‑96 (MQ=255)
                                                                 ct‑‑cCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa                           <  1:765959/96‑1 (MQ=255)
                                                                 ct‑‑cCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa                           <  2:1370748/96‑1 (MQ=255)
                                                                  t‑‑cCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc                          <  1:999357/96‑1 (MQ=255)
                                                                  t‑‑cCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc                          >  1:337638/1‑96 (MQ=255)
                                                                   cccccGCAGGGCGAGGGAGAACACACTCAAGGCCTTCTCCTGGAGCAGGCCTTGCTATTAGTTGCGGTCCAGCCCCTTAATGATGTGATATCCCaa                           <  1:97828/94‑1 (MQ=255)
                                                                     cccACAGGGAGAGGGAGAAAACCCTCAAGGCTTTCTCCTGGAGAAGGCTTGGCAATAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg                        <  2:7991805/96‑1 (MQ=255)
                                                                     cccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACt                         <  1:13666612/96‑1 (MQ=255)
                                                                      ccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg                        <  2:1320707/96‑1 (MQ=255)
                                                                      ccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg                        <  2:10989591/96‑1 (MQ=255)
                                                                      ccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg                        >  2:153567/1‑96 (MQ=255)
                                                                      ccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg                        <  1:8014078/96‑1 (MQ=255)
                                                                       cacaGGGAGAGGGAGAAAACGCTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg                       <  1:3148199/96‑1 (MQ=255)
                                                                       cacaGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg                       <  2:2099070/96‑1 (MQ=255)
                                                                         caGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt                     <  2:6333069/96‑1 (MQ=255)
                                                                          agggagagggagAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtg                    >  1:5454640/1‑96 (MQ=255)
                                                                           gggagagggagtACACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtgt                   <  1:2735477/96‑1 (MQ=255)
                                                                           gggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtgt                   <  2:8505607/96‑1 (MQ=255)
                                                                            ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg                  >  2:764164/1‑96 (MQ=255)
                                                                            ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg                  <  2:11544618/96‑1 (MQ=255)
                                                                              agagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa                <  1:3113239/96‑1 (MQ=255)
                                                                              agagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa                <  1:4973674/96‑1 (MQ=255)
                                                                               gagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg               <  2:8276439/96‑1 (MQ=255)
                                                                               gagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg               <  2:9290385/96‑1 (MQ=255)
                                                                               gagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg               >  2:13495080/1‑96 (MQ=255)
                                                                                agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGagcagc              >  1:159821/1‑96 (MQ=255)
                                                                                agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGc              >  2:9035796/1‑96 (MQ=255)
                                                                                agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTATGCAGc              >  2:12798292/1‑96 (MQ=255)
                                                                                 gggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCg             <  1:9271538/96‑1 (MQ=255)
                                                                                  ggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg            >  1:4103265/1‑96 (MQ=255)
                                                                                    agaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc          <  2:3645038/96‑1 (MQ=255)
                                                                                    agaAAACACTCAAGGCCTCCTCCTGGCGAAGGCCTTGCTATTAGTTGCGGTACAGCTCCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc          <  2:2388209/96‑1 (MQ=255)
                                                                                     gaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc         <  1:11231873/96‑1 (MQ=255)
                                                                                     gaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc         >  2:623019/1‑96 (MQ=255)
                                                                                     gaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc         <  1:12662139/96‑1 (MQ=255)
                                                                                     gaAAACACTCAAGGCCTTCTCCTAGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc         <  1:10062857/96‑1 (MQ=255)
                                                                                       acacacTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCgg       >  1:11472122/3‑96 (MQ=255)
                                                                                       aaaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCgg       <  2:13317051/96‑1 (MQ=255)
                                                                                       aaaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGAGCGCAGCGGGCCgg       >  1:4503713/1‑96 (MQ=255)
                                                                                        aaCCCTCAAGGCCTTCTTCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt      <  2:540669/96‑1 (MQ=255)
                                                                                        aaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt      <  2:14061162/96‑1 (MQ=255)
                                                                                         acacTCACGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc     <  1:5702003/96‑1 (MQ=255)
                                                                                         acacTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc     <  2:3201011/96‑1 (MQ=255)
                                                                                           acTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCgg   >  1:9446859/1‑96 (MQ=255)
                                                                                            cTCAAGGCCTCCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGc  >  1:7728635/1‑96 (MQ=255)
                                                                                                  |                                                                                          
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGA‑‑CTCT‑‑CCCACAGGGAGAGGGAGAAAACACTCAAGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC  >  NC_000913/3957031‑3957213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: