Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,008,400 +GAAA coding (483/516 nt) b4555 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,008,3981.A100.0% 699.2 / NA 181E161K (GAA→AAA) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (82/99);  total (82/99)
*NC_0009134,008,3982.A99.5% 702.9 / ‑6.1 182E161K (GAA→AAA) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base A (81/100);  minor base C (1/0);  total (82/100)
Fisher's exact test for biased strand distribution p-value = 4.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*NC_0009134,008,3983.G100.0% 700.1 / NA 184E161? (GAA→NAA) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (82/102);  total (82/102)
*NC_0009134,008,3984.A100.0% 717.7 / NA 184E161K (GAA→AAA) b4555hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (82/102);  total (82/102)

Only 100 of 209 total aligned reads displayed.

GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAGGCCATGCGCTGGAAGGCTGGCG‑‑‑‑AACTGGCTACAGCTGAAGGATTGATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCG  >  NC_000913/4008306‑4008461
                                                                                               ||||                                                                       
ggggCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCAAGTGCTGGAAGCGGTGGCG‑‑‑‑a                                                                        >  2:3025377/1‑96 (MQ=255)
  ggCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag                                                                      <  1:12447895/96‑2 (MQ=255)
   gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga                                                                     <  1:1268475/96‑3 (MQ=255)
   gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga                                                                     <  2:599041/96‑3 (MQ=255)
    cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                                    <  2:1345660/96‑4 (MQ=255)
    cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                                    >  1:3301232/1‑93 (MQ=255)
    cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                                    <  1:3615729/96‑4 (MQ=255)
     gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaaa                                                                   <  2:10998203/96‑5 (MQ=255)
                                     cTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                                    <  2:3761128/96‑1 (MQ=255)
                                      tGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                   <  1:5021437/96‑2 (MQ=255)
                                      tGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                   <  2:5615949/96‑2 (MQ=255)
                                      tGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                                   <  1:6839357/96‑2 (MQ=255)
                                       gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                  <  1:9864495/96‑3 (MQ=255)
                                       gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                  >  2:12489683/1‑94 (MQ=255)
                                       gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                  >  2:9040325/1‑94 (MQ=255)
                                       gTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                  <  2:5241731/96‑3 (MQ=255)
                                       gTCTGGAAGTGAGGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                                  <  1:6083090/96‑3 (MQ=255)
                                        tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg                                 >  2:7833193/1‑93 (MQ=255)
                                         cTGGATGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                                <  1:4762551/96‑5 (MQ=255)
                                         cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                                >  2:446608/1‑92 (MQ=255)
                                                 gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                        <  2:6878174/96‑1 (MQ=255)
                                                 gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                        <  1:1072092/96‑1 (MQ=255)
                                                 gATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGAGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt                        <  2:1017290/96‑1 (MQ=255)
                                                  aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                       <  2:161048/96‑1 (MQ=255)
                                                  aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg                       <  1:11708699/96‑1 (MQ=255)
                                                   tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAtcg                      >  1:12886350/1‑94 (MQ=255)
                                                    ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTCCAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                     >  2:9543973/1‑96 (MQ=255)
                                                    ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                     <  1:13237122/96‑1 (MQ=255)
                                                    ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa                     <  1:13138591/96‑1 (MQ=255)
                                                     gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                    <  2:8316868/96‑1 (MQ=255)
                                                     gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                    <  1:3148361/96‑1 (MQ=255)
                                                     gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                    <  1:5164257/96‑1 (MQ=255)
                                                     gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac                    <  1:10467316/96‑1 (MQ=255)
                                                      cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                   <  1:7580615/96‑1 (MQ=255)
                                                      cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                   <  1:4331098/96‑1 (MQ=255)
                                                      cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg                   <  2:2577626/96‑1 (MQ=255)
                                                      cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGAGTTTGGTGACGGGATGAacg                   >  2:9604794/1‑96 (MQ=255)
                                                       gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  >  2:8797669/1‑96 (MQ=255)
                                                       gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  >  2:10446427/1‑96 (MQ=255)
                                                       gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  >  1:6278348/1‑96 (MQ=255)
                                                       gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  >  2:6681137/1‑96 (MQ=255)
                                                       gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  <  1:6963532/96‑1 (MQ=255)
                                                       gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  >  2:4189712/1‑96 (MQ=255)
                                                       gggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga                  <  1:380389/96‑1 (MQ=255)
                                                        gtcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                 <  1:12859185/94‑1 (MQ=255)
                                                        ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAACCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                 <  2:7490016/96‑1 (MQ=255)
                                                        ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                 >  2:11684656/1‑96 (MQ=255)
                                                        ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                 >  2:2688130/1‑96 (MQ=255)
                                                        ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGGGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac                 >  1:1566776/1‑96 (MQ=255)
                                                        ggcggcGTATCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGAGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgtc                 <  1:7369695/96‑3 (MQ=255)
                                                         gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg                <  2:12997738/96‑1 (MQ=255)
                                                          cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc               >  1:8004230/1‑96 (MQ=255)
                                                          cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc               <  1:934936/96‑1 (MQ=255)
                                                          cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc               >  2:7099164/1‑96 (MQ=255)
                                                           ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc              >  1:7394350/1‑96 (MQ=255)
                                                           ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc              <  1:3236505/96‑1 (MQ=255)
                                                           ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGATACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc              <  1:11448052/96‑1 (MQ=255)
                                                           ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGACGAAGAAACTGGGCTACAGCCTGAAGGATTGAATTGCGTTTGGTGACGGGATGAACGACGcc              >  2:14090384/1‑96 (MQ=255)
                                                           ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGGGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc              >  2:1886487/1‑96 (MQ=255)
                                                            gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg             >  2:4457700/1‑96 (MQ=255)
                                                             cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa            >  1:4288595/1‑96 (MQ=255)
                                                             cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGa            >  1:4703266/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  2:7698105/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           <  2:3393939/96‑1 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  2:6175746/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           <  1:10187737/96‑1 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  2:13238161/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  1:11103465/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           <  2:13116170/96‑1 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  1:1305043/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  1:13948971/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  1:9484328/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           >  1:3477950/1‑96 (MQ=255)
                                                              gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa           <  1:711031/96‑1 (MQ=255)
                                                                ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt         <  2:1977746/92‑1 (MQ=255)
                                                                ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt         <  2:10664278/92‑1 (MQ=255)
                                                                ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt         <  1:1861003/92‑1 (MQ=255)
                                                                ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt         <  2:5010472/92‑1 (MQ=255)
                                                                 tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg        <  2:5734103/93‑1 (MQ=255)
                                                                 tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg        >  2:10076470/4‑96 (MQ=255)
                                                                 tcaaaaGGCCATGCGCTGGAAGCAGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg        <  1:10058740/93‑1 (MQ=255)
                                                                  caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCATGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc       >  1:2711779/3‑96 (MQ=255)
                                                                   aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGca      <  1:4128963/95‑2 (MQ=255)
                                                                   aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt      >  1:12519757/2‑96 (MQ=255)
                                                                   aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt      <  2:2208879/95‑1 (MQ=255)
                                                                   aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt      <  1:13381048/95‑1 (MQ=255)
                                                                   aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGAAGCCGAAATGCt      >  1:2024656/2‑96 (MQ=255)
                                                                    aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg     >  1:7888015/1‑96 (MQ=255)
                                                                    aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg     <  1:14256729/96‑1 (MQ=255)
                                                                     aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt    <  1:5889603/96‑1 (MQ=255)
                                                                     aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt    <  1:4934091/96‑1 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt  <  1:8861793/96‑2 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc   <  1:1745716/96‑1 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc   >  2:8011587/1‑96 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc   <  1:3005409/96‑1 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc   >  1:4364937/1‑96 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTc   >  2:1856400/1‑96 (MQ=255)
                                                                      aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTCACGGGATGAACGACGCCGAAATGCTGTc   <  2:13877228/96‑1 (MQ=255)
                                                                       ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTct  <  2:9449805/96‑2 (MQ=255)
                                                                       ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCg  <  2:8897623/96‑1 (MQ=255)
                                                                                               ||||                                                                       
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAGGCCATGCGCTGGAAGGCTGGCG‑‑‑‑AACTGGCTACAGCTGAAGGATTGATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCG  >  NC_000913/4008306‑4008461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: