Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,013,717 +G coding (3/999 nt) ysgA ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,013,7171.G99.8% 1724.3 / NA 452M1M (ATG→ATC) †ysgAhypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base G (236/214);  minor base A (1/0);  total (237/215)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 494 total aligned reads displayed.

TGGTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCTTATAAAAATGTTGCGCAATGTTAACTATAGTC  >  NC_000913/4013622‑4013805
                                                                                                  |                                                                                          
ggttAAGGAGGCTTGTTTCCCCCTGGTGAGGGAAGAGAGGGGAGCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGc                                                                                             <  2:5735065/93‑1 (MQ=255)
 ggTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcg                                                                                            >  1:9925967/1‑95 (MQ=255)
  ggaaGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGCCGAAGCGAGAGGcga                                                                                           >  1:11688344/3‑94 (MQ=255)
  gaaaGCAGGATTGTTACCCCTTTGGGAGGGGAAAGAGGTGACCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcga                                                                                           <  1:5975425/94‑3 (MQ=255)
  gTAGGCAGGCTTGTTTCCCCCTTGGGAGGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcga                                                                                           <  2:13673048/96‑3 (MQ=255)
  gTAAGCAGGCATTTTCCCCCCTTGTGAAGGGAGAGCGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcga                                                                                           <  2:5472635/96‑3 (MQ=255)
  gTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGGGGcga                                                                                           >  1:13955176/1‑94 (MQ=255)
   tAAGCAGGCATTTTACCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcgat                                                                                          <  2:6472601/96‑4 (MQ=255)
   tAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAGGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcgat                                                                                          >  1:11971059/1‑93 (MQ=255)
   tAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcgat                                                                                          >  1:2645211/1‑93 (MQ=255)
   tAAGAAGCCATGTTACCCCTTTGTGAAGGGATAGAGGCGAACCCCGCCACAATCGCGTCGTCCGGTGTCTGAACGATGGTCGAAGCGAGAGGcgat                                                                                          <  2:8612146/96‑4 (MQ=255)
    aaGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcgatg                                                                                         >  2:6784203/1‑92 (MQ=255)
      gCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgca                                                                                       >  1:10464972/1‑96 (MQ=255)
        aGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgcagc                                                                                     >  2:7891666/1‑96 (MQ=255)
         gggttGTTACCCCCTTGTGAGGGGATAGGGGGGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgcagca                                                                                    <  2:2149205/92‑1 (MQ=255)
         ggCTTGTTATCCCTGGGGGAAGGGAAAGAGGTAAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgcagca                                                                                    <  2:1803677/96‑1 (MQ=255)
         gctaTGTTACCCCTGTGTAAGGGGATAGAGGGGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgcagca                                                                                    <  2:9198973/93‑1 (MQ=255)
           cATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTGGAAGCGAGAGGCGATGCAGCAgg                                                                                  >  1:10068208/1‑96 (MQ=255)
            aTGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGt                                                                                 >  1:2843821/1‑96 (MQ=255)
               ttATCCCCTTGGGAAGGGATAGAGGTGACCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCa                                                                              <  1:8046035/96‑1 (MQ=255)
                 tcccccCTGGGAAGGGGATAGAGGTCACGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCaa                                                                             <  1:4724598/94‑1 (MQ=255)
                  tCCCCTGGGGAAGGGAGAGAGGTGAGGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAt                                                                           <  1:9125071/96‑1 (MQ=255)
                  gccccTTGTGAAGGGAAAGAGGAGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAt                                                                           <  2:374470/95‑1 (MQ=255)
                   ccccTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGGGCAAATc                                                                          >  1:225377/1‑96 (MQ=255)
                    cccTGGAGAAGGGAAGATGGAGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATcc                                                                         <  1:14197354/96‑1 (MQ=255)
                     ccTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGGCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCa                                                                        >  1:6853697/1‑96 (MQ=255)
                       tggtgAAGGGATGGAGGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGa                                                                      <  1:11428708/94‑1 (MQ=255)
                         gtgAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAtt                                                                    >  2:9126669/1‑96 (MQ=255)
                          tgAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttg                                                                   >  1:149510/1‑96 (MQ=255)
                          tgAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttg                                                                   >  1:1725353/1‑96 (MQ=255)
                           gAAGGGATAGGGGAGACGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttgt                                                                  <  2:1244213/96‑1 (MQ=255)
                           gAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCAGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttgt                                                                  >  2:10433453/1‑96 (MQ=255)
                            gaggggATAGAGGGGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttgt                                                                  <  1:9676483/93‑1 (MQ=255)
                            aaGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttgtt                                                                 >  1:9769059/1‑96 (MQ=255)
                               gggATAGAGGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgt                                                               <  2:4849016/96‑1 (MQ=255)
                                ggATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgtg                                                              >  2:13220919/1‑96 (MQ=255)
                                ggATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgtg                                                              >  1:3418314/1‑96 (MQ=255)
                                   tAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgtgttg                                                           >  1:13890598/1‑96 (MQ=255)
                                     gagGTGACGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTgttgtt                                                         <  1:12701903/96‑1 (MQ=255)
                                     gagGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTgttgtt                                                         >  1:7224923/1‑96 (MQ=255)
                                      ggggTGACGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTgttgtt                                                         <  2:9479832/94‑1 (MQ=255)
                                      agGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGttgttg                                                        <  1:649253/96‑1 (MQ=255)
                                         gTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGcc                                                      >  1:11022221/1‑96 (MQ=255)
                                         gTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGGGCAAATCCAGATTGTTGTGTTGTTGcc                                                      >  2:6262632/1‑96 (MQ=255)
                                          tGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCa                                                     >  2:1462728/1‑96 (MQ=255)
                                              ccccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGt                                                 <  1:13586/95‑1 (MQ=255)
                                               cccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTa                                                <  1:12935712/96‑1 (MQ=255)
                                               cccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTa                                                >  2:2709821/1‑96 (MQ=255)
                                                ccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAt                                               <  1:8331403/96‑1 (MQ=255)
                                                 cGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAtt                                              <  1:7063223/96‑1 (MQ=255)
                                                 cGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAtt                                              >  2:4636260/1‑96 (MQ=255)
                                                 cGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCAATGGTAtt                                              <  2:6615256/96‑1 (MQ=255)
                                                  gCCCCAATCGCGTCGTCCGCGGTATGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtc                                             <  2:10692551/96‑1 (MQ=255)
                                                  gCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtc                                             >  2:7175920/1‑96 (MQ=255)
                                                  gCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtc                                             >  2:8908884/1‑96 (MQ=255)
                                                    cacaATCGCGTCGTCCTGGGTCTGAACCATGGTCGAAGCGAGAGGCGATGCAGAAGGAGCAAATCCAGATCGTTGTGTTGTTGCCATGGTATtctc                                           <  1:13255911/96‑1 (MQ=255)
                                                    cacaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtctc                                           >  2:6997513/1‑96 (MQ=255)
                                                     acaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTcc                                          >  1:9277478/1‑96 (MQ=255)
                                                     acaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTcc                                          <  2:1637965/96‑1 (MQ=255)
                                                      caATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCg                                         <  2:10139101/96‑1 (MQ=255)
                                                      caATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCg                                         >  1:3727637/1‑96 (MQ=255)
                                                      caATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCg                                         >  2:4994416/1‑96 (MQ=255)
                                                       aaTCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGt                                        >  1:7635347/1‑96 (MQ=255)
                                                       aaTCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGt                                        >  2:1503584/1‑96 (MQ=255)
                                                       aaTCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGt                                        >  1:6280628/1‑96 (MQ=255)
                                                        aTCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTa                                       <  2:12819454/96‑1 (MQ=255)
                                                            cgtcgtCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTAccct                                 <  2:7279932/96‑3 (MQ=255)
                                                             gtcgtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTAccctt                                <  1:3212511/96‑4 (MQ=255)
                                                             gtcgtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGGGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTAccctt                                >  2:3398583/1‑93 (MQ=255)
                                                             gtcgtcCGGGGGCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTAccctt                                >  1:5142689/1‑93 (MQ=255)
                                                              tcgtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTAccctta                               <  1:12336833/96‑5 (MQ=255)
                                                              tcgtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTAccctta                               <  1:4503020/96‑5 (MQ=255)
                                                                gtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTtata                              >  1:2446607/1‑96 (MQ=255)
                                                                gtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTCTTGCCATGGTATTCTCCGTACCCTtata                              <  2:11450265/96‑1 (MQ=255)
                                                                  ccGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATaaa                            <  1:1952868/96‑1 (MQ=255)
                                                                   cGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATaaaa                           >  2:4393748/1‑96 (MQ=255)
                                                                     gggTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGGGCAAATCCAGGTTGTTGTGTTGGTGCCATGGTATTCTCCGTACCCTTATAAAAAt                         >  2:13578445/1‑96 (MQ=255)
                                                                       gTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGt                       <  2:12014202/96‑1 (MQ=255)
                                                                        tCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGtt                      >  1:8221800/1‑96 (MQ=255)
                                                                         cTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGttc                     <  1:13746207/96‑2 (MQ=255)
                                                                          tGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTgc                    >  2:11654903/1‑96 (MQ=255)
                                                                           taaCGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGAGTTGTTGCCAGGGTATTCTCCGTACCCTTATAAAAATGTTgcg                   >  1:8812632/2‑96 (MQ=255)
                                                                            aaCGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTgcgc                  <  2:8123886/96‑1 (MQ=255)
                                                                              cGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCaa                >  1:5715092/1‑96 (MQ=255)
                                                                               gATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAAt               <  2:9769059/96‑1 (MQ=255)
                                                                                aTGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATg              <  2:5236220/96‑1 (MQ=255)
                                                                                 tGGTCGAAGCGAGAGGCGATGCAGCAGGTGTAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGt             <  2:14100587/96‑1 (MQ=255)
                                                                                 tGGTCGAAGCGAGAGGCGATGCAGCAGGGGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGt             >  1:4916668/1‑96 (MQ=255)
                                                                                   gTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATNTTa           <  1:400371/96‑1 (MQ=255)
                                                                                   gTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTa           <  1:10229771/96‑1 (MQ=255)
                                                                                    tCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTaa          <  2:1309001/96‑1 (MQ=255)
                                                                                     cGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAAc         >  2:3177714/1‑96 (MQ=255)
                                                                                      gAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACt        >  1:2196022/1‑96 (MQ=255)
                                                                                        aGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACtat      >  2:13413622/1‑96 (MQ=255)
                                                                                        aGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCGTATAAAAATGTTGCGCAATGTTAACtat      <  2:13917876/96‑1 (MQ=255)
                                                                                        aGCGAGAGGCGATGCAGCAGGGGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACGCTTATAAAAATGTTGCGCAATGTTAACtat      >  2:7624824/1‑96 (MQ=255)
                                                                                          cGAGAGGCGATGCAGCAGGGGCAAATCCAGGTTGTTGAGGTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAg    >  1:4100154/1‑96 (MQ=255)
                                                                                           gagaGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGt   <  2:4017567/96‑1 (MQ=255)
                                                                                           gagaGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGt   <  2:11022221/96‑1 (MQ=255)
                                                                                            agagGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGTc  >  2:2430050/1‑96 (MQ=255)
                                                                                                  |                                                                                          
TGGTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCTTATAAAAATGTTGCGCAATGTTAACTATAGTC  >  NC_000913/4013622‑4013805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: