Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,583,050 G→A Q446* (CAA→TAA)  hsdR ← endonuclease R

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,583,0500GA99.6% 1973.3 / NA 514Q446* (CAA→TAA) hsdRendonuclease R
Reads supporting (aligned to +/- strand):  ref base G (0/2);  major base A (250/259);  minor base C (0/2);  total (250/264)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 542 total aligned reads displayed.

GCCTTTTCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTGCGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTCGCGAT  >  NC_000913/4582956‑4583142
                                                                                              |                                                                                            
  cTTTTCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACgg                                                                                           <  1:2308057/96‑1 (MQ=255)
  cTTTTCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACgg                                                                                           >  2:6450854/1‑96 (MQ=255)
    tttCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGtt                                                                                         >  2:217289/1‑96 (MQ=255)
    tttCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGtt                                                                                         <  1:1727018/96‑1 (MQ=255)
    tttCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGtt                                                                                         <  2:11975464/96‑1 (MQ=255)
      tCAACCGCGCGGACGGCATCTTCCTGATAATAACGCCGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCg                                                                                       <  1:1505709/96‑1 (MQ=255)
       cAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCGAACCACTGATTCTGTTTTTACGGTTCGc                                                                                      >  1:9723738/1‑96 (MQ=255)
       cAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGc                                                                                      <  1:3859505/96‑1 (MQ=255)
         aCCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTg                                                                                    <  2:12148607/96‑1 (MQ=255)
           cgcgcgGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGcc                                                                                  <  1:1036920/96‑1 (MQ=255)
            gcgcgGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCg                                                                                 >  2:10067736/1‑96 (MQ=255)
               cgGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGc                                                                              >  1:4044151/1‑96 (MQ=255)
               cgGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTAATGCCAGGGTTATCGGCAAACAACTGATTCTGTTTTTACGGTTCGCTGCCGAGc                                                                              >  1:257696/1‑96 (MQ=255)
                   cGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCAttt                                                                          <  2:1804195/96‑1 (MQ=255)
                    ggCATCTTCCTGATAATAACGCAGGCCCATCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTc                                                                         <  1:3731535/96‑1 (MQ=255)
                     gCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTcc                                                                        >  1:12022247/1‑96 (MQ=255)
                     gCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTcc                                                                        >  1:1144592/1‑96 (MQ=255)
                     gCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTcc                                                                        >  1:8992742/1‑96 (MQ=255)
                      cATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCca                                                                       >  2:10854755/1‑96 (MQ=255)
                        tCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCcagc                                                                     >  2:2413567/1‑96 (MQ=255)
                        tCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTCTTACGGTTCGCTGCCGAGCATTTCcagc                                                                     <  2:11422188/96‑1 (MQ=255)
                         catCCTGATAATAACGCAGGCCCAGGTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCAGTTCcagca                                                                    >  1:11686156/3‑96 (MQ=255)
                         cTTGCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCcagca                                                                    >  2:12578452/1‑96 (MQ=255)
                         cTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCcagca                                                                    >  2:5523410/1‑96 (MQ=255)
                         cTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCcagca                                                                    <  2:9310985/96‑1 (MQ=255)
                         cTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCcagca                                                                    >  2:7026516/1‑96 (MQ=255)
                            ccTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGct                                                                 <  2:9568578/96‑1 (MQ=255)
                             cTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAACCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGctc                                                                <  2:2000266/96‑1 (MQ=255)
                              tGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGctct                                                               >  2:6011579/1‑96 (MQ=255)
                              tGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTACAGCAGctct                                                               >  1:13634129/1‑96 (MQ=255)
                               gATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCtt                                                              <  1:3200500/96‑1 (MQ=255)
                               gATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCtt                                                              >  2:7315148/1‑96 (MQ=255)
                                ataataACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCGGCAGCTCTTc                                                             <  1:827206/96‑1 (MQ=255)
                                ataataACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTc                                                             <  1:11240148/96‑1 (MQ=255)
                                ataataACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTc                                                             >  1:10586262/1‑96 (MQ=255)
                                 taataaCGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTcc                                                            <  2:765212/96‑1 (MQ=255)
                                  aataaCGCAGGCCTAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCg                                                           >  1:13888895/1‑96 (MQ=255)
                                  aataaCGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCg                                                           <  2:12978527/96‑1 (MQ=255)
                                   ataaCGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCgg                                                          <  2:8901792/96‑1 (MQ=255)
                                   ataaCGCAGGCCCAGCTCGCTCATGCCAGGCTTATCGGCAAACCTCTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCgg                                                          <  2:5190837/96‑1 (MQ=255)
                                    taaCGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCggg                                                         >  1:8384507/1‑96 (MQ=255)
                                        gCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGt                                                     >  2:6200824/1‑96 (MQ=255)
                                         cAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTg                                                    >  1:12927752/1‑96 (MQ=255)
                                           ggCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGcc                                                  <  1:8061530/96‑1 (MQ=255)
                                             cccAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCAc                                                <  2:13415056/96‑1 (MQ=255)
                                               cAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTTCGGTTCGCTTCCGAGCCTTTCCAGCAGCTCTTCCGGGCGGGGCCACTc                                              >  1:14201235/1‑96 (MQ=255)
                                               aacctcactcaTGCCAGGGTTACCGGCAACCCACTGGTTCTGTTTTTGCGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTc                                              <  1:12309752/93‑1 (MQ=255)
                                                aGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCg                                             >  2:4759398/1‑96 (MQ=255)
                                                aGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCAGTTCCAGCAGCTCTTCCGGGCGGAGCCACTCg                                             >  1:4840173/1‑96 (MQ=255)
                                                 gctcgctcATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCgg                                            <  1:10067736/96‑1 (MQ=255)
                                                   tcgctcATGCCAGGGTTATCGTCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGt                                          <  2:3867593/96‑1 (MQ=255)
                                                   tcgctcATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCggtt                                          <  1:3366773/96‑3 (MQ=255)
                                                   tcgctcATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGt                                          >  1:13108416/1‑96 (MQ=255)
                                                     gctgATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTaa                                        <  1:4214268/96‑1 (MQ=255)
                                                      ctcATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAg                                       >  2:1560686/1‑96 (MQ=255)
                                                       tcATGGCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAgg                                      <  1:6686329/96‑1 (MQ=255)
                                                       tcATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAgg                                      <  1:8661298/96‑1 (MQ=255)
                                                        cATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGc                                     >  2:6898451/1‑96 (MQ=255)
                                                         aTGCCAGGGTTATCGGCAAACCCCTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCt                                    <  2:8435869/96‑1 (MQ=255)
                                                         aTGCCAGGGTTAACGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCt                                    <  2:8690399/96‑1 (MQ=255)
                                                          tGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCtt                                   >  1:13396349/1‑96 (MQ=255)
                                                          tGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCtt                                   >  1:5947428/1‑96 (MQ=255)
                                                            ccAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTc                                 <  2:12846747/96‑1 (MQ=255)
                                                            ccAGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTc                                 >  2:13784756/1‑96 (MQ=255)
                                                              aGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGa                               >  1:8546193/1‑96 (MQ=255)
                                                              aGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGa                               >  1:7636239/1‑96 (MQ=255)
                                                              aGGGTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGa                               >  1:6919570/1‑96 (MQ=255)
                                                               gggTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGAc                              >  2:4609103/1‑96 (MQ=255)
                                                                 gTTATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACat                            >  1:7224262/1‑96 (MQ=255)
                                                                  ttATCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACata                           >  2:8232161/1‑96 (MQ=255)
                                                                     tCGGCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTg                        <  1:7450738/96‑1 (MQ=255)
                                                                       ggCAAACCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCg                      >  2:3333933/1‑96 (MQ=255)
                                                                          aaaCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCgggg                   >  1:961653/1‑95 (MQ=255)
                                                                          aaaCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGt                   >  1:8142524/1‑96 (MQ=255)
                                                                          aaaCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGt                   <  1:7107288/96‑1 (MQ=255)
                                                                          aaaCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGGGCCACTCGGGTAAGGCTTTCGACATATTGCGGGt                   >  2:8527019/1‑96 (MQ=255)
                                                                           aaCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTa                  <  2:9806954/96‑1 (MQ=255)
                                                                           aaCCACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGGAAGGCTTTCGACATATTGCGGGTa                  >  2:4372282/1‑96 (MQ=255)
                                                                             ccACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATc                <  1:5091434/96‑1 (MQ=255)
                                                                              cACTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATca               >  2:13098699/1‑96 (MQ=255)
                                                                               aCTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcac              <  2:14201235/96‑1 (MQ=255)
                                                                                cctaTTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCCGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcacg             <  1:6466898/93‑1 (MQ=255)
                                                                                cTGTTTCTTTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTCCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcacg             <  1:7861949/96‑1 (MQ=255)
                                                                                cTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcacg             >  2:7874122/1‑96 (MQ=255)
                                                                                cTGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGGATcacg             >  2:5728037/1‑96 (MQ=255)
                                                                                 tGATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGGAAGGCTTTCGACATATTGCGGGTATcacgc            >  2:11032382/1‑96 (MQ=255)
                                                                                  gATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcacgta           <  1:11112814/96‑3 (MQ=255)
                                                                                  gATTCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcacgca           <  1:4420371/96‑1 (MQ=255)
                                                                                    ttCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATcacgcacg         >  1:6211313/1‑96 (MQ=255)
                                                                                     tCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGt        <  1:135/96‑1 (MQ=255)
                                                                                     tCTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGGGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGt        >  2:2860808/1‑96 (MQ=255)
                                                                                      cTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTc       <  2:1430908/96‑1 (MQ=255)
                                                                                      cTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTc       <  1:5523410/96‑1 (MQ=255)
                                                                                      cTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTc       <  1:12501947/96‑1 (MQ=255)
                                                                                      cTGTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACACGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTc       <  1:9297787/96‑1 (MQ=255)
                                                                                        gTTTTTACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTcgc     >  1:2741816/1‑96 (MQ=255)
                                                                                          ttttACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTCGCGa   >  2:3192139/1‑96 (MQ=255)
                                                                                          ttttACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTCGCGa   >  1:9896732/1‑96 (MQ=255)
                                                                                           tttACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTCGCGAt  <  1:5681490/96‑1 (MQ=255)
                                                                                           tttACGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTCGCGAt  <  2:13623529/96‑1 (MQ=255)
                                                                                              |                                                                                            
GCCTTTTCAACCGCGCGGACGGCATCTTCCTGATAATAACGCAGGCCCAGCTCGCTCATGCCAGGGTTATCGGCAAACCACTGATTCTGTTTTTGCGGTTCGCTGCCGAGCATTTCCAGCAGCTCTTCCGGGCGGTGCCACTCGGGTAAGGCTTTCGACATATTGCGGGTATCACGCACGTCGCGAT  >  NC_000913/4582956‑4583142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: